Wall clock time and date at job start Mon Mar 30 2020 03:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30614 * 1 3 3 Si 1.86803 * 119.99941 * 2 1 4 4 H 1.48497 * 109.47162 * 270.00506 * 3 2 1 5 5 H 1.48503 * 109.47057 * 30.00583 * 3 2 1 6 6 H 1.48507 * 109.46936 * 150.00326 * 3 2 1 7 7 C 1.40318 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00466 * 170.66984 * 7 2 1 9 9 C 1.40063 * 119.99774 * 350.67244 * 7 2 1 10 10 C 1.40806 * 120.24118 * 324.02984 * 9 7 2 11 11 C 1.35804 * 120.52978 * 180.02562 * 10 9 7 12 12 C 1.40146 * 121.05299 * 0.04098 * 11 10 9 13 13 C 1.46504 * 119.49974 * 179.97438 * 12 11 10 14 14 O 1.21366 * 119.99489 * 359.97438 * 13 12 11 15 15 C 1.41203 * 121.00150 * 359.96027 * 12 11 10 16 16 S 1.76012 * 130.67313 * 180.02562 * 15 12 11 17 17 C 1.75501 * 91.58750 * 179.82649 * 16 15 12 18 18 C 1.33517 * 110.61132 * 0.30832 * 17 16 15 19 19 N 1.40247 * 122.20236 * 179.89684 * 18 17 16 20 20 C 1.39698 * 119.83609 * 0.02562 * 15 12 11 21 21 H 0.97003 * 120.00313 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.73485 * 0.02562 * 10 9 7 23 23 H 1.07996 * 119.47450 * 180.02562 * 11 10 9 24 24 H 1.07997 * 120.00337 * 179.97438 * 13 12 11 25 25 H 1.07999 * 124.69551 * 180.20365 * 17 16 15 26 26 H 0.96993 * 120.00242 * 161.99453 * 19 18 17 27 27 H 0.97006 * 119.99494 * 341.72445 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 2.4875 2.0465 -1.4000 5 1 1.4376 2.6527 0.7002 6 1 3.5378 1.4401 0.7000 7 6 2.0078 -1.2152 -0.0005 8 1 3.0771 -1.2213 -0.1522 9 6 1.3214 -2.4202 0.1955 10 6 0.2272 -2.4773 1.0799 11 6 -0.4422 -3.6427 1.2748 12 6 -0.0639 -4.8144 0.6054 13 6 -0.8097 -6.0531 0.8416 14 8 -1.7471 -6.0593 1.6124 15 6 1.0251 -4.8191 -0.2935 16 16 1.7112 -6.1222 -1.2574 17 6 2.9231 -5.0486 -1.9349 18 6 2.7884 -3.8159 -1.4400 19 7 3.6348 -2.7629 -1.8162 20 6 1.7413 -3.6420 -0.5238 21 1 -0.4851 0.8400 0.0004 22 1 -0.0822 -1.5871 1.6074 23 1 -1.2793 -3.6671 1.9567 24 1 -0.5254 -6.9606 0.3297 25 1 3.6749 -5.3446 -2.6515 26 1 3.3672 -1.8445 -1.6557 27 1 4.4896 -2.9532 -2.2335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396252386.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:53 Heat of formation + Delta-G solvation = -17.555954 kcal Electronic energy + Delta-G solvation = -15082.384763 eV Core-core repulsion = 12509.311631 eV Total energy + Delta-G solvation = -2573.073132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41353 -39.27059 -36.91527 -35.82982 -32.68368 -31.78300 -29.84551 -27.64206 -24.55381 -23.97475 -22.23654 -20.48244 -19.88442 -18.14896 -17.58729 -17.05137 -16.74931 -16.23094 -15.92263 -15.26938 -15.11635 -14.69713 -14.59983 -14.21083 -13.71115 -13.22445 -13.09508 -12.91032 -12.68577 -12.16176 -12.13883 -11.76722 -11.54363 -11.29295 -10.64247 -10.42291 -9.51726 -9.17526 -8.92934 -7.91386 -6.63266 0.04470 0.35053 0.95413 1.33091 1.38747 1.47825 1.54475 1.70619 2.07941 2.12320 2.60768 3.41806 3.50375 3.71259 4.20126 4.39395 4.55840 4.79325 4.91527 4.95632 5.13294 5.19955 5.36144 5.65227 5.72228 5.86843 5.92849 6.33100 6.47196 6.64355 6.78564 6.80858 7.30438 7.98780 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.009342 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.314190 B = 2996.517393 C = 4122.007441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.034 3.966 3 Si 0.994 3.006 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.249 1.249 7 C -0.435 4.435 8 H 0.113 0.887 9 C 0.158 3.842 10 C -0.215 4.215 11 C -0.013 4.013 12 C -0.328 4.328 13 C 0.389 3.611 14 O -0.542 6.542 15 C -0.036 4.036 16 S 0.079 5.921 17 C -0.375 4.375 18 C 0.241 3.759 19 N -0.868 5.868 20 C -0.240 4.240 21 H 0.303 0.697 22 H 0.109 0.891 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.172 0.828 26 H 0.403 0.597 27 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.945 0.492 -3.756 7.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.189 4.189 3 Si 0.812 3.188 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.172 1.172 7 C -0.461 4.461 8 H 0.131 0.869 9 C 0.152 3.848 10 C -0.236 4.236 11 C -0.034 4.034 12 C -0.337 4.337 13 C 0.258 3.742 14 O -0.425 6.425 15 C -0.153 4.153 16 S 0.337 5.663 17 C -0.515 4.515 18 C 0.128 3.872 19 N -0.416 5.416 20 C -0.249 4.249 21 H 0.115 0.885 22 H 0.126 0.874 23 H 0.122 0.878 24 H 0.123 0.877 25 H 0.189 0.811 26 H 0.237 0.763 27 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.975 -0.903 -3.635 7.052 hybrid contribution 0.489 2.409 0.138 2.461 sum 6.464 1.505 -3.498 7.502 Atomic orbital electron populations 1.69741 1.09676 1.32572 1.28477 1.27169 0.95634 1.05208 0.90841 0.84991 0.79167 0.74343 0.80265 1.17744 1.19193 1.17166 1.20191 0.97121 0.90517 1.38235 0.86919 1.18911 0.89751 0.90672 0.85497 1.20618 1.02050 0.96951 1.04028 1.20556 0.95798 0.92150 0.94892 1.19318 1.05116 0.97331 1.11936 1.23639 0.80418 0.91480 0.78670 1.90398 1.28836 1.88596 1.34718 1.22700 0.97452 0.96974 0.98214 1.82997 1.29134 1.11111 1.43037 1.24068 1.13021 0.96327 1.18052 1.16359 0.90203 0.89141 0.91459 1.42608 1.21318 1.06483 1.71225 1.19236 1.03748 0.95616 1.06328 0.88521 0.87352 0.87761 0.87721 0.81091 0.76320 0.76922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.13 11.25 21.89 0.25 -34.89 15 2 C 0.03 1.39 5.23 85.38 0.45 1.83 15 3 Si 0.99 30.31 29.57 68.60 2.03 32.34 15 4 H -0.25 -7.35 7.11 99.48 0.71 -6.64 15 5 H -0.27 -8.05 7.11 99.48 0.71 -7.34 15 6 H -0.25 -7.31 7.11 99.48 0.71 -6.60 15 7 C -0.43 -19.17 7.51 23.22 0.17 -19.00 15 8 H 0.11 4.50 5.90 -2.91 -0.02 4.48 15 9 C 0.16 7.70 5.64 -19.66 -0.11 7.58 15 10 C -0.22 -10.78 8.50 22.33 0.19 -10.59 15 11 C -0.01 -0.65 9.44 22.17 0.21 -0.44 15 12 C -0.33 -15.27 5.90 -19.93 -0.12 -15.39 15 13 C 0.39 16.42 11.26 69.98 0.79 17.21 15 14 O -0.54 -25.63 17.07 -3.30 -0.06 -25.68 15 15 C -0.04 -1.64 6.35 23.35 0.15 -1.49 15 16 S 0.08 2.84 22.68 -56.49 -1.28 1.56 15 17 C -0.37 -13.40 11.05 66.75 0.74 -12.67 15 18 C 0.24 9.61 6.74 37.20 0.25 9.86 15 19 N -0.87 -28.67 8.71 -53.33 -0.46 -29.14 15 20 C -0.24 -11.13 6.03 -19.89 -0.12 -11.25 15 21 H 0.30 12.11 8.29 -92.71 -0.77 11.34 15 22 H 0.11 5.48 6.70 -2.91 -0.02 5.46 15 23 H 0.10 4.97 7.55 -2.91 -0.02 4.95 15 24 H 0.11 3.66 7.64 -2.91 -0.02 3.64 15 25 H 0.17 5.06 8.06 -2.91 -0.02 5.04 15 26 H 0.40 13.69 5.51 -92.71 -0.51 13.18 15 27 H 0.40 10.27 8.92 -92.70 -0.83 9.45 15 Total: -1.00 -56.19 252.82 2.98 -53.21 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -0.09 Total: 36.94 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 2.60 Total: -34.33 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -0.22 Total: -64.02 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.68 kcal Atomic # 14 Polarization: 30.31 SS G_CDS: 2.03 Total: 32.34 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.28 Total: 1.56 kcal Total: -56.19 2.98 -53.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396252386.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.651 kcal (2) G-P(sol) polarization free energy of solvation -56.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds