Wall clock time and date at job start Mon Mar 30 2020 03:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35902 * 117.00172 * 2 1 4 4 C 1.38917 * 119.96627 * 0.02745 * 3 2 1 5 5 C 1.38254 * 120.57686 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.10763 * 0.02562 * 5 4 3 7 7 C 1.39229 * 119.82257 * 359.97438 * 6 5 4 8 8 C 1.39200 * 119.96396 * 180.02562 * 3 2 1 9 9 N 1.39716 * 131.50709 * 0.32125 * 8 3 2 10 10 C 1.36250 * 124.31239 * 359.97438 * 9 8 3 11 11 H 1.08001 * 119.99844 * 34.24480 * 10 9 8 12 12 C 1.39586 * 119.99998 * 214.23507 * 10 9 8 13 13 N 1.30993 * 119.99738 * 19.54527 * 12 10 9 14 14 Si 1.86801 * 120.00184 * 199.54039 * 12 10 9 15 15 H 1.48505 * 109.47061 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.46957 * 120.00231 * 14 12 10 17 17 H 1.48498 * 109.46865 * 240.00569 * 14 12 10 18 18 C 1.34407 * 111.37058 * 180.15535 * 9 8 3 19 19 O 1.21514 * 126.15787 * 179.82608 * 18 9 8 20 20 C 1.47833 * 133.06635 * 180.02562 * 7 6 5 21 21 O 1.21448 * 127.53075 * 359.97438 * 20 7 6 22 22 H 1.09000 * 109.46958 * 299.99756 * 1 2 3 23 23 H 1.08994 * 109.47537 * 59.99433 * 1 2 3 24 24 H 1.08999 * 109.47731 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.71398 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.94547 * 179.97438 * 5 4 3 27 27 H 1.07997 * 120.09139 * 180.02562 * 6 5 4 28 28 H 0.97004 * 120.00007 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2887 2.3755 0.0006 5 6 1.9032 3.6140 0.0011 6 6 3.2832 3.7036 0.0006 7 6 4.0525 2.5431 0.0000 8 6 3.4361 1.2828 -0.0005 9 7 4.4148 0.2858 -0.0070 10 6 4.1498 -1.0507 -0.0141 11 1 3.2858 -1.4270 -0.5416 12 6 4.9950 -1.9334 0.6603 13 7 5.7963 -1.4872 1.5956 14 14 4.9832 -3.7510 0.2293 15 1 3.9965 -3.9967 -0.8531 16 1 6.3346 -4.1591 -0.2315 17 1 4.6095 -4.5418 1.4293 18 6 5.6511 0.8131 -0.0014 19 8 6.6955 0.1919 -0.0019 20 6 5.5104 2.2984 -0.0002 21 8 6.3995 3.1258 -0.0003 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 0.2105 2.3130 0.0014 26 1 1.3046 4.5129 0.0011 27 1 3.7630 4.6712 0.0014 28 1 6.3834 -2.1007 2.0645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400937927.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:27 Heat of formation + Delta-G solvation = -41.046120 kcal Electronic energy + Delta-G solvation = -17786.920972 eV Core-core repulsion = 14770.076359 eV Total energy + Delta-G solvation = -3016.844613 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90772 -38.87156 -37.38614 -36.70394 -34.85847 -32.71585 -30.12226 -29.12516 -27.46697 -25.99229 -24.28838 -21.73700 -20.91175 -19.91865 -18.05148 -17.04796 -16.49206 -15.64421 -15.53887 -15.04558 -14.88000 -14.66131 -14.43597 -14.06633 -13.57251 -12.94405 -12.80093 -12.33345 -12.25763 -11.71795 -11.43447 -11.16267 -11.09140 -10.84370 -10.72967 -10.60972 -10.41065 -9.87587 -8.83744 -8.35595 -8.14474 -7.06998 -6.48610 -4.17715 0.78059 1.82693 2.50604 3.15243 3.22188 3.26859 3.71853 3.82777 4.19983 4.27784 4.31742 4.53614 5.02048 5.12626 5.31517 5.34465 5.39828 5.52471 5.57352 5.70686 5.81861 5.99759 6.44521 6.58825 6.78584 7.01691 7.32526 7.49717 7.73346 7.89995 8.35890 8.65291 9.03298 9.58492 10.56032 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.011561 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.604137 B = 2421.322001 C = 3706.624187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.294 6.294 3 C 0.083 3.917 4 C -0.142 4.142 5 C -0.161 4.161 6 C -0.041 4.041 7 C -0.244 4.244 8 C 0.190 3.810 9 N -0.357 5.357 10 C -0.354 4.354 11 H 0.111 0.889 12 C 0.056 3.944 13 N -0.814 5.814 14 Si 0.929 3.071 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.279 1.279 18 C 0.440 3.560 19 O -0.440 6.440 20 C 0.394 3.606 21 O -0.410 6.410 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 4.777 -2.332 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.207 6.207 3 C 0.035 3.965 4 C -0.162 4.162 5 C -0.181 4.181 6 C -0.060 4.060 7 C -0.250 4.250 8 C 0.087 3.913 9 N -0.064 5.064 10 C -0.480 4.480 11 H 0.129 0.871 12 C -0.157 4.157 13 N -0.446 5.446 14 Si 0.754 3.246 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.205 1.205 18 C 0.226 3.774 19 O -0.313 6.313 20 C 0.266 3.734 21 O -0.282 6.282 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.113 0.887 25 H 0.147 0.853 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.020 4.432 -2.186 11.172 hybrid contribution -0.415 -0.749 0.071 0.859 sum -10.434 3.683 -2.114 11.266 Atomic orbital electron populations 1.22976 0.80045 1.03423 1.00441 1.86338 1.19663 1.25621 1.89068 1.18110 0.88891 0.85102 1.04394 1.21092 0.99338 0.91665 1.04115 1.20535 0.93796 0.96659 1.07115 1.20515 0.92939 0.96433 0.96112 1.20398 0.95219 0.93146 1.16216 1.18405 0.88400 0.88840 0.95649 1.41081 1.02798 1.05199 1.57283 1.19573 1.15290 0.78167 1.34955 0.87137 1.25506 0.95817 1.01054 0.93321 1.69744 1.20280 1.37380 1.17166 0.85860 0.78683 0.81321 0.78715 1.18798 1.20167 1.20496 1.20167 0.84581 0.88261 0.84361 1.90653 1.29539 1.67355 1.43750 1.22899 0.87861 0.91404 0.71195 1.90472 1.49332 1.54051 1.34325 0.93261 0.93342 0.88728 0.85302 0.85716 0.85665 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 15 2 O -0.29 -5.46 8.78 -19.43 -0.17 -5.63 15 3 C 0.08 1.57 6.71 -38.97 -0.26 1.31 15 4 C -0.14 -2.11 9.03 -39.32 -0.35 -2.46 15 5 C -0.16 -2.26 10.04 -39.56 -0.40 -2.66 15 6 C -0.04 -0.67 10.10 -39.19 -0.40 -1.07 15 7 C -0.24 -5.07 6.34 -104.83 -0.66 -5.73 15 8 C 0.19 4.27 6.70 -83.13 -0.56 3.71 15 9 N -0.36 -9.39 2.79 -59.19 -0.17 -9.56 15 10 C -0.35 -9.55 9.06 -15.09 -0.14 -9.68 15 11 H 0.11 2.85 6.95 -52.49 -0.36 2.49 15 12 C 0.06 1.53 4.79 -17.41 -0.08 1.45 15 13 N -0.81 -23.59 11.22 55.53 0.62 -22.97 15 14 Si 0.93 20.70 29.60 -169.99 -5.03 15.67 15 15 H -0.26 -5.62 7.11 56.52 0.40 -5.22 15 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 18 C 0.44 12.01 7.40 -11.87 -0.09 11.92 15 19 O -0.44 -13.32 15.37 5.33 0.08 -13.24 15 20 C 0.39 9.38 7.95 -31.10 -0.25 9.13 15 21 O -0.41 -9.90 18.04 5.39 0.10 -9.81 15 22 H 0.05 0.52 7.65 -51.93 -0.40 0.13 15 23 H 0.05 0.50 7.65 -51.93 -0.40 0.10 15 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.13 1.46 6.26 -52.49 -0.33 1.13 15 26 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 27 H 0.13 1.77 8.06 -52.49 -0.42 1.34 15 28 H 0.28 7.50 8.30 -40.82 -0.34 7.16 15 LS Contribution 256.12 15.07 3.86 3.86 Total: -1.00 -32.53 256.12 -4.79 -37.32 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -1.89 Total: -2.89 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -2.19 Total: 7.24 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.46 Total: -32.53 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: 0.01 Total: -28.67 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.53 -4.79 -37.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400937927.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.721 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds