Wall clock time and date at job start Mon Mar 30 2020 03:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35902 * 117.00172 * 2 1 4 4 C 1.38917 * 119.96627 * 0.02745 * 3 2 1 5 5 C 1.38254 * 120.57686 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.10763 * 0.02562 * 5 4 3 7 7 C 1.39229 * 119.82257 * 359.97438 * 6 5 4 8 8 C 1.39200 * 119.96396 * 180.02562 * 3 2 1 9 9 N 1.39716 * 131.50709 * 0.32125 * 8 3 2 10 10 C 1.36250 * 124.31239 * 359.97438 * 9 8 3 11 11 H 1.08001 * 119.99844 * 34.24480 * 10 9 8 12 12 C 1.39586 * 119.99998 * 214.23507 * 10 9 8 13 13 N 1.30993 * 119.99738 * 19.54527 * 12 10 9 14 14 Si 1.86801 * 120.00184 * 199.54039 * 12 10 9 15 15 H 1.48505 * 109.47061 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.46957 * 120.00231 * 14 12 10 17 17 H 1.48498 * 109.46865 * 240.00569 * 14 12 10 18 18 C 1.34407 * 111.37058 * 180.15535 * 9 8 3 19 19 O 1.21514 * 126.15787 * 179.82608 * 18 9 8 20 20 C 1.47833 * 133.06635 * 180.02562 * 7 6 5 21 21 O 1.21448 * 127.53075 * 359.97438 * 20 7 6 22 22 H 1.09000 * 109.46958 * 299.99756 * 1 2 3 23 23 H 1.08994 * 109.47537 * 59.99433 * 1 2 3 24 24 H 1.08999 * 109.47731 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.71398 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.94547 * 179.97438 * 5 4 3 27 27 H 1.07997 * 120.09139 * 180.02562 * 6 5 4 28 28 H 0.97004 * 120.00007 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2887 2.3755 0.0006 5 6 1.9032 3.6140 0.0011 6 6 3.2832 3.7036 0.0006 7 6 4.0525 2.5431 0.0000 8 6 3.4361 1.2828 -0.0005 9 7 4.4148 0.2858 -0.0070 10 6 4.1498 -1.0507 -0.0141 11 1 3.2858 -1.4270 -0.5416 12 6 4.9950 -1.9334 0.6603 13 7 5.7963 -1.4872 1.5956 14 14 4.9832 -3.7510 0.2293 15 1 3.9965 -3.9967 -0.8531 16 1 6.3346 -4.1591 -0.2315 17 1 4.6095 -4.5418 1.4293 18 6 5.6511 0.8131 -0.0014 19 8 6.6955 0.1919 -0.0019 20 6 5.5104 2.2984 -0.0002 21 8 6.3995 3.1258 -0.0003 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 0.2105 2.3130 0.0014 26 1 1.3046 4.5129 0.0011 27 1 3.7630 4.6712 0.0014 28 1 6.3834 -2.1007 2.0645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400937927.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:27 Heat of formation + Delta-G solvation = -64.452101 kcal Electronic energy + Delta-G solvation = -17787.935932 eV Core-core repulsion = 14770.076359 eV Total energy + Delta-G solvation = -3017.859573 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.58927 -40.35319 -39.22340 -38.23463 -36.61267 -34.63617 -31.70119 -30.60584 -28.90240 -27.38129 -26.13153 -23.23310 -22.48193 -21.71742 -19.73289 -18.57160 -18.23386 -17.31442 -17.09909 -16.61641 -16.38174 -16.26038 -16.07587 -15.78128 -15.20760 -14.69071 -14.33146 -13.70128 -13.64071 -13.44821 -13.01032 -12.98203 -12.75005 -12.40635 -12.15351 -12.06803 -11.89485 -11.62114 -10.70151 -10.13681 -9.67760 -8.76515 -8.42238 -6.23162 -0.90191 0.41238 0.92853 1.35189 1.42434 1.53826 2.02706 2.36427 2.45358 2.50527 2.75549 2.93855 3.10380 3.60557 3.98970 4.09640 4.19035 4.40073 4.51623 4.55635 4.65167 4.85718 5.06954 5.27194 5.33792 5.42925 5.65317 5.74651 5.93724 6.37988 6.62090 6.73299 7.08838 7.68355 8.57531 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.011561 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.604137 B = 2421.322001 C = 3706.624187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.082 3.918 4 C -0.124 4.124 5 C -0.118 4.118 6 C -0.042 4.042 7 C -0.240 4.240 8 C 0.131 3.869 9 N -0.372 5.372 10 C -0.361 4.361 11 H 0.116 0.884 12 C 0.000 4.000 13 N -0.857 5.857 14 Si 0.998 3.002 15 H -0.246 1.246 16 H -0.286 1.286 17 H -0.266 1.266 18 C 0.400 3.600 19 O -0.511 6.511 20 C 0.394 3.606 21 O -0.428 6.428 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.179 0.821 26 H 0.185 0.815 27 H 0.155 0.845 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.160 6.646 -2.793 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.035 3.965 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.061 4.061 7 C -0.245 4.245 8 C 0.033 3.967 9 N -0.081 5.081 10 C -0.487 4.487 11 H 0.133 0.867 12 C -0.209 4.209 13 N -0.491 5.491 14 Si 0.819 3.181 15 H -0.168 1.168 16 H -0.212 1.212 17 H -0.190 1.190 18 C 0.189 3.811 19 O -0.390 6.390 20 C 0.269 3.731 21 O -0.302 6.302 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.125 0.875 25 H 0.197 0.803 26 H 0.202 0.798 27 H 0.173 0.827 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.862 6.374 -2.659 16.388 hybrid contribution 0.630 -1.085 0.200 1.271 sum -14.231 5.289 -2.459 15.380 Atomic orbital electron populations 1.23382 0.76655 1.05278 1.02620 1.86292 1.23230 1.25990 1.88965 1.18473 0.87887 0.86965 1.03224 1.21735 1.01582 0.90155 1.00812 1.21300 0.92778 0.98501 1.01063 1.21034 0.94147 0.95924 0.94973 1.20386 0.92938 0.94517 1.16626 1.18829 0.89802 0.88292 0.99748 1.41093 1.03534 1.05726 1.57723 1.19873 1.15183 0.79362 1.34307 0.86695 1.26597 0.95379 1.05827 0.93056 1.69876 1.21551 1.38822 1.18838 0.84847 0.78381 0.75607 0.79271 1.16843 1.21212 1.19043 1.20792 0.84617 0.90031 0.85685 1.90561 1.31096 1.68741 1.48558 1.22837 0.89738 0.89831 0.70735 1.90432 1.50259 1.53725 1.35752 0.91152 0.90687 0.87493 0.80334 0.79791 0.82721 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.81 113.37 1.11 1.41 15 2 O -0.33 -11.56 8.78 -92.45 -0.81 -12.37 15 3 C 0.08 2.90 6.71 22.66 0.15 3.05 15 4 C -0.12 -2.86 9.03 22.44 0.20 -2.66 15 5 C -0.12 -2.42 10.04 22.29 0.22 -2.19 15 6 C -0.04 -1.20 10.10 22.52 0.23 -0.97 15 7 C -0.24 -9.82 6.34 -20.00 -0.13 -9.95 15 8 C 0.13 5.92 6.70 38.62 0.26 6.18 15 9 N -0.37 -20.60 2.79 -459.67 -1.28 -21.88 15 10 C -0.36 -20.39 9.06 84.33 0.76 -19.63 15 11 H 0.12 6.13 6.95 -2.91 -0.02 6.11 15 12 C 0.00 -0.03 4.79 85.14 0.41 0.38 15 13 N -0.86 -53.06 11.22 21.76 0.24 -52.81 15 14 Si 1.00 44.13 29.60 68.60 2.03 46.16 15 15 H -0.25 -9.94 7.11 99.48 0.71 -9.23 15 16 H -0.29 -12.97 7.11 99.48 0.71 -12.26 15 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 18 C 0.40 23.64 7.40 87.25 0.65 24.29 15 19 O -0.51 -33.96 15.37 -3.74 -0.06 -34.02 15 20 C 0.39 19.76 7.95 27.76 0.22 19.98 15 21 O -0.43 -21.71 18.04 -3.53 -0.06 -21.77 15 22 H 0.07 1.11 7.65 -2.39 -0.02 1.09 15 23 H 0.07 1.10 7.65 -2.39 -0.02 1.08 15 24 H 0.11 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.18 2.45 6.26 -2.91 -0.02 2.43 15 26 H 0.18 1.90 8.06 -2.91 -0.02 1.88 15 27 H 0.16 3.55 8.06 -2.91 -0.02 3.53 15 28 H 0.27 15.95 8.30 -92.71 -0.77 15.18 15 Total: -1.00 -80.82 256.12 5.36 -75.47 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.21 Total: 1.34 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 4.09 Total: 19.89 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -1.04 Total: -74.69 kcal Atomic # 8 Polarization: -67.23 SS G_CDS: -0.93 Total: -68.16 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -80.82 5.36 -75.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400937927.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.015 kcal (2) G-P(sol) polarization free energy of solvation -80.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds