Wall clock time and date at job start Mon Mar 30 2020 03:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00032 * 2 1 4 4 C 1.50701 * 109.46717 * 66.04824 * 3 2 1 5 5 H 1.07994 * 120.00074 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99579 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99867 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99641 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47092 * 90.00258 * 8 6 4 10 10 H 1.48505 * 109.46627 * 210.00081 * 8 6 4 11 11 H 1.48502 * 109.47228 * 329.99992 * 8 6 4 12 12 C 1.46910 * 110.99756 * 236.04779 * 2 1 3 13 13 C 1.50697 * 109.46985 * 293.95332 * 12 2 1 14 14 N 1.30214 * 121.09369 * 90.02999 * 13 12 2 15 15 S 1.69960 * 105.64985 * 179.72483 * 14 13 12 16 16 C 1.72300 * 94.53656 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 127.48976 * 179.97438 * 16 15 14 18 18 N 1.31050 * 105.02831 * 0.02562 * 16 15 14 19 19 H 1.09004 * 109.47186 * 183.94798 * 1 2 3 20 20 H 1.08994 * 109.47003 * 303.95240 * 1 2 3 21 21 H 1.09004 * 109.46915 * 63.95375 * 1 2 3 22 22 H 1.08993 * 109.47153 * 186.04571 * 3 2 1 23 23 H 1.08994 * 109.46858 * 306.04674 * 3 2 1 24 24 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.46525 * 173.95570 * 12 2 1 26 26 H 1.08994 * 109.47054 * 53.95317 * 12 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 2.7128 4.0014 0.6154 8 14 1.5827 4.1868 3.1383 9 1 2.6587 3.9497 4.1338 10 1 1.4313 5.6465 2.9110 11 1 0.3042 3.6301 3.6491 12 6 1.9954 -0.7660 -1.1377 13 6 1.6369 -2.2204 -0.9730 14 7 0.5258 -2.6980 -1.4557 15 16 0.5257 -4.3503 -1.0576 16 6 2.0480 -4.2965 -0.2524 17 17 2.8846 -5.6102 0.5145 18 7 2.4368 -3.0484 -0.3435 19 1 -0.3634 -1.0253 0.0708 20 1 -0.3633 0.5739 0.8524 21 1 -0.3633 0.4513 -0.9233 22 1 3.0797 1.3444 -0.1082 23 1 1.5611 1.9273 -0.8309 24 1 2.9874 4.9176 0.7775 25 1 3.0797 -0.6611 -1.1757 26 1 1.5611 -0.3873 -2.0628 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687713192.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:24 Heat of formation + Delta-G solvation = 62.301364 kcal Electronic energy + Delta-G solvation = -13379.034893 eV Core-core repulsion = 10839.284535 eV Total energy + Delta-G solvation = -2539.750357 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 247.024 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46656 -37.45054 -36.41937 -32.78376 -32.12394 -28.69125 -27.09207 -25.28206 -23.70633 -20.90456 -19.85426 -19.09092 -16.75912 -16.33200 -15.88049 -14.84414 -14.32175 -14.16617 -13.86975 -12.82034 -12.76208 -12.47442 -12.14839 -11.97680 -11.50072 -11.25159 -11.12397 -10.93388 -10.68154 -10.56133 -10.28708 -9.96674 -9.92801 -9.34839 -9.20629 -8.45907 -7.40824 -6.05363 -4.06623 0.09525 0.37102 1.33266 1.64110 2.41712 3.32098 3.37851 3.41529 4.03219 4.41832 4.97430 5.26467 5.31166 5.41832 5.74549 5.97875 6.11972 6.29524 6.70807 7.16218 7.24254 7.37916 7.72401 7.97597 8.08772 8.44322 8.99870 9.57386 11.05594 Molecular weight = 247.02amu Principal moments of inertia in cm(-1) A = 0.037923 B = 0.004972 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.163753 B = 5630.377599 C = 5909.309352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.532 5.532 3 C 0.195 3.805 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.134 3.866 13 C 0.305 3.695 14 N -0.457 5.457 15 S 0.263 5.737 16 C 0.108 3.892 17 Cl 0.056 6.944 18 N -0.476 5.476 19 H 0.042 0.958 20 H 0.078 0.922 21 H 0.018 0.982 22 H 0.035 0.965 23 H -0.003 1.003 24 H 0.262 0.738 25 H 0.104 0.896 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.294 -17.873 -3.663 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.258 5.258 3 C 0.071 3.929 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.001 3.999 13 C 0.015 3.985 14 N -0.288 5.288 15 S 0.398 5.602 16 C -0.206 4.206 17 Cl 0.084 6.916 18 N -0.200 5.200 19 H 0.061 0.939 20 H 0.097 0.903 21 H 0.036 0.964 22 H 0.053 0.947 23 H 0.014 0.986 24 H 0.072 0.928 25 H 0.122 0.878 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.052 -18.052 -3.780 18.694 hybrid contribution 0.518 1.050 0.640 1.334 sum -2.534 -17.002 -3.141 17.475 Atomic orbital electron populations 1.22278 0.88254 0.99709 1.01011 1.62125 1.07536 1.18235 1.37925 1.19785 0.95677 0.80294 0.97150 1.21109 1.35051 0.96934 1.01554 0.91806 1.24973 0.95234 0.97262 0.97051 1.69953 1.38247 1.11529 1.33995 0.86470 0.78880 0.78382 0.83509 1.20568 1.21291 1.19878 1.20748 1.02017 0.82237 0.94913 1.23606 0.85237 0.99180 0.90429 1.77743 1.22586 1.01012 1.27410 1.84945 1.16963 1.11742 1.46518 1.29039 0.97837 0.93151 1.00609 1.98451 1.76916 1.38287 1.77962 1.67063 1.33980 1.00084 1.18855 0.93879 0.90332 0.96383 0.94695 0.98561 0.92845 0.87825 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.13 60.07 0.55 1.29 15 2 N -0.53 -11.71 4.74 -245.82 -1.17 -12.88 15 3 C 0.20 5.03 4.72 -4.97 -0.02 5.01 15 4 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 15 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 15 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 7 N -0.90 -26.41 13.29 55.43 0.74 -25.68 15 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 15 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 12 C 0.13 2.49 5.50 -4.97 -0.03 2.46 15 13 C 0.30 5.22 6.30 -159.04 -1.00 4.22 15 14 N -0.46 -7.28 11.18 29.45 0.33 -6.95 15 15 S 0.26 3.21 23.81 -107.50 -2.56 0.65 15 16 C 0.11 1.44 8.50 52.43 0.45 1.89 15 17 Cl 0.06 0.59 29.33 -51.86 -1.52 -0.93 15 18 N -0.48 -7.92 10.57 -12.26 -0.13 -8.05 15 19 H 0.04 0.81 6.60 -51.93 -0.34 0.47 15 20 H 0.08 1.69 6.76 -51.93 -0.35 1.34 15 21 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 15 22 H 0.03 0.95 7.93 -51.93 -0.41 0.53 15 23 H 0.00 -0.09 8.12 -51.93 -0.42 -0.51 15 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 25 H 0.10 1.86 7.93 -51.93 -0.41 1.45 15 26 H 0.06 1.03 8.12 -51.93 -0.42 0.61 15 LS Contribution 260.89 15.07 3.93 3.93 Total: -1.00 -29.90 260.89 -8.14 -38.04 By element: Atomic # 1 Polarization: -4.28 SS G_CDS: -2.29 Total: -6.58 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.45 Total: 1.84 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.23 Total: -53.56 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.56 Total: 0.65 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -1.52 Total: -0.93 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.90 -8.14 -38.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713192.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.340 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds