Wall clock time and date at job start Mon Mar 30 2020 03:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00032 * 2 1 4 4 C 1.50701 * 109.46717 * 66.04824 * 3 2 1 5 5 H 1.07994 * 120.00074 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99579 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99867 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99641 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47092 * 90.00258 * 8 6 4 10 10 H 1.48505 * 109.46627 * 210.00081 * 8 6 4 11 11 H 1.48502 * 109.47228 * 329.99992 * 8 6 4 12 12 C 1.46910 * 110.99756 * 236.04779 * 2 1 3 13 13 C 1.50697 * 109.46985 * 293.95332 * 12 2 1 14 14 N 1.30214 * 121.09369 * 90.02999 * 13 12 2 15 15 S 1.69960 * 105.64985 * 179.72483 * 14 13 12 16 16 C 1.72300 * 94.53656 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 127.48976 * 179.97438 * 16 15 14 18 18 N 1.31050 * 105.02831 * 0.02562 * 16 15 14 19 19 H 1.09004 * 109.47186 * 183.94798 * 1 2 3 20 20 H 1.08994 * 109.47003 * 303.95240 * 1 2 3 21 21 H 1.09004 * 109.46915 * 63.95375 * 1 2 3 22 22 H 1.08993 * 109.47153 * 186.04571 * 3 2 1 23 23 H 1.08994 * 109.46858 * 306.04674 * 3 2 1 24 24 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.46525 * 173.95570 * 12 2 1 26 26 H 1.08994 * 109.47054 * 53.95317 * 12 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0277 3.3491 1.5290 7 7 2.7128 4.0014 0.6154 8 14 1.5827 4.1868 3.1383 9 1 2.6587 3.9497 4.1338 10 1 1.4313 5.6465 2.9110 11 1 0.3042 3.6301 3.6491 12 6 1.9954 -0.7660 -1.1377 13 6 1.6369 -2.2204 -0.9730 14 7 0.5258 -2.6980 -1.4557 15 16 0.5257 -4.3503 -1.0576 16 6 2.0480 -4.2965 -0.2524 17 17 2.8846 -5.6102 0.5145 18 7 2.4368 -3.0484 -0.3435 19 1 -0.3634 -1.0253 0.0708 20 1 -0.3633 0.5739 0.8524 21 1 -0.3633 0.4513 -0.9233 22 1 3.0797 1.3444 -0.1082 23 1 1.5611 1.9273 -0.8309 24 1 2.9874 4.9176 0.7775 25 1 3.0797 -0.6611 -1.1757 26 1 1.5611 -0.3873 -2.0628 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687713192.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:24 Heat of formation + Delta-G solvation = 41.338958 kcal Electronic energy + Delta-G solvation = -13379.943891 eV Core-core repulsion = 10839.284535 eV Total energy + Delta-G solvation = -2540.659355 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 247.024 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.67633 -38.46961 -38.05362 -34.75294 -33.48087 -30.29831 -28.94931 -26.77201 -25.35499 -22.67804 -21.16179 -20.23266 -18.54351 -17.76418 -17.27696 -16.64459 -15.92463 -15.70939 -15.56960 -14.39843 -13.89018 -13.78321 -13.63796 -13.51482 -13.17228 -12.89808 -12.67628 -12.55091 -12.43014 -12.18904 -11.92581 -11.45272 -11.36003 -11.07233 -10.61430 -10.31722 -9.17925 -8.20418 -6.29862 -1.01656 -0.65393 0.24199 0.56084 1.16959 1.42650 1.43960 1.54759 2.41151 2.82590 3.12644 3.33658 3.98166 4.07781 4.34941 4.42854 4.56374 4.66035 4.99761 5.14565 5.23489 5.62230 5.98796 6.15253 6.24058 6.47256 6.83693 7.39084 8.90699 Molecular weight = 247.02amu Principal moments of inertia in cm(-1) A = 0.037923 B = 0.004972 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.163753 B = 5630.377599 C = 5909.309352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.542 5.542 3 C 0.211 3.789 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.968 3.032 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.136 3.864 13 C 0.296 3.704 14 N -0.484 5.484 15 S 0.346 5.654 16 C 0.099 3.901 17 Cl 0.083 6.917 18 N -0.510 5.510 19 H 0.060 0.940 20 H 0.062 0.938 21 H 0.020 0.980 22 H 0.014 0.986 23 H -0.025 1.025 24 H 0.265 0.735 25 H 0.101 0.899 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -19.376 -2.974 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.268 5.268 3 C 0.085 3.915 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.190 1.190 12 C 0.003 3.997 13 C 0.006 3.994 14 N -0.316 5.316 15 S 0.482 5.518 16 C -0.213 4.213 17 Cl 0.111 6.889 18 N -0.235 5.235 19 H 0.078 0.922 20 H 0.081 0.919 21 H 0.038 0.962 22 H 0.032 0.968 23 H -0.008 1.008 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.862 -19.605 -3.090 20.219 hybrid contribution 0.742 1.303 0.377 1.546 sum -3.120 -18.302 -2.712 18.763 Atomic orbital electron populations 1.22175 0.87270 1.00446 1.00384 1.61975 1.08456 1.16189 1.40172 1.19423 0.94247 0.82225 0.95627 1.21406 1.35126 0.97530 1.02275 0.92093 1.25853 0.94968 0.97921 1.00590 1.70068 1.39138 1.11965 1.35980 0.85398 0.78886 0.77317 0.79099 1.19945 1.20642 1.19020 1.20629 1.01821 0.83333 0.93877 1.23074 0.86011 0.98486 0.91802 1.77501 1.22390 1.04066 1.27692 1.84641 1.14691 1.08210 1.44217 1.29306 0.98710 0.92948 1.00287 1.98464 1.76550 1.36525 1.77369 1.67027 1.34947 1.01391 1.20128 0.92169 0.91871 0.96159 0.96810 1.00765 0.92583 0.88118 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.86 9.13 127.69 1.17 3.02 15 2 N -0.54 -24.17 4.74 -931.65 -4.42 -28.59 15 3 C 0.21 11.16 4.72 85.56 0.40 11.57 15 4 C -0.53 -29.80 8.46 25.60 0.22 -29.58 15 5 H 0.06 3.42 7.12 -2.91 -0.02 3.40 15 6 C 0.01 0.29 5.46 84.66 0.46 0.75 15 7 N -0.93 -55.52 13.29 21.45 0.28 -55.24 15 8 Si 0.97 44.29 29.54 68.60 2.03 46.32 15 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 15 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 12 C 0.14 5.10 5.50 85.55 0.47 5.57 15 13 C 0.30 9.90 6.30 139.39 0.88 10.78 15 14 N -0.48 -14.64 11.18 -60.73 -0.68 -15.32 15 15 S 0.35 7.52 23.81 -56.49 -1.35 6.18 15 16 C 0.10 2.46 8.50 130.36 1.11 3.57 15 17 Cl 0.08 1.55 29.33 -2.72 -0.08 1.47 15 18 N -0.51 -16.44 10.57 -192.70 -2.04 -18.47 15 19 H 0.06 2.22 6.60 -2.39 -0.02 2.20 15 20 H 0.06 2.73 6.76 -2.39 -0.02 2.71 15 21 H 0.02 0.79 8.14 -2.38 -0.02 0.78 15 22 H 0.01 0.78 7.93 -2.39 -0.02 0.76 15 23 H -0.03 -1.43 8.12 -2.39 -0.02 -1.45 15 24 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 25 H 0.10 3.73 7.93 -2.39 -0.02 3.72 15 26 H 0.07 2.33 8.12 -2.39 -0.02 2.31 15 Total: -1.00 -63.43 260.89 -0.34 -63.78 By element: Atomic # 1 Polarization: -6.99 SS G_CDS: 1.20 Total: -5.79 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 4.71 Total: 5.67 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -6.85 Total: -117.62 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 7.52 SS G_CDS: -1.35 Total: 6.18 kcal Atomic # 17 Polarization: 1.55 SS G_CDS: -0.08 Total: 1.47 kcal Total: -63.43 -0.34 -63.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713192.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.114 kcal (2) G-P(sol) polarization free energy of solvation -63.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds