Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33418 * 125.15200 * 2 1 4 4 C 1.38771 * 114.87762 * 179.75226 * 3 2 1 5 5 N 1.40792 * 122.60775 * 180.22834 * 4 3 2 6 6 S 1.65597 * 120.00049 * 135.00169 * 5 4 3 7 7 O 1.42098 * 106.40258 * 178.53802 * 6 5 4 8 8 O 1.42096 * 106.40096 * 311.45774 * 6 5 4 9 9 C 1.76198 * 107.21810 * 64.99572 * 6 5 4 10 10 H 1.08003 * 120.00277 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99967 * 179.97438 * 9 6 5 12 12 N 1.31514 * 119.99882 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 120.00172 * 0.02562 * 11 9 6 14 14 H 1.48497 * 109.47246 * 89.99463 * 13 11 9 15 15 H 1.48503 * 109.47275 * 209.99558 * 13 11 9 16 16 H 1.48506 * 109.46887 * 329.99370 * 13 11 9 17 17 C 1.33742 * 114.78066 * 0.24723 * 4 3 2 18 18 S 1.75855 * 125.15623 * 180.13442 * 2 1 3 19 19 H 1.09002 * 109.47097 * 90.00483 * 1 2 3 20 20 H 1.09005 * 109.47249 * 210.00084 * 1 2 3 21 21 H 1.09005 * 109.47432 * 329.99961 * 1 2 3 22 22 H 1.08002 * 122.56380 * 0.02721 * 3 2 1 23 23 H 0.97005 * 119.99809 * 314.99585 * 5 4 3 24 24 H 0.97006 * 120.00024 * 180.02562 * 12 11 9 25 25 H 1.08001 * 125.19475 * 179.97438 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2751 1.0909 0.0000 4 6 3.6406 0.8434 0.0054 5 7 4.5986 1.8750 0.0110 6 16 5.9008 1.7902 1.0304 7 8 6.6866 2.9463 0.7748 8 8 5.3846 1.4699 2.3150 9 6 6.8699 0.4082 0.5249 10 1 6.5565 -0.1924 -0.3163 11 6 8.0288 0.0940 1.2025 12 7 8.7523 -0.9373 0.8248 13 14 8.5713 1.1330 2.6570 14 1 7.9861 0.5811 3.9052 15 1 10.0530 1.1135 2.7540 16 1 8.1060 2.5306 2.4678 17 6 3.9756 -0.4514 0.0046 18 16 2.5196 -1.4378 -0.0034 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5139 22 1 1.8656 2.0902 0.0004 23 1 4.4959 2.6355 -0.5824 24 1 9.5675 -1.1585 1.3018 25 1 4.9860 -0.8330 0.0079 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710728288.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = -72.707293 kcal Electronic energy + Delta-G solvation = -13989.564851 eV Core-core repulsion = 11413.711035 eV Total energy + Delta-G solvation = -2575.853817 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 247.012 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.67476 -37.76287 -36.62449 -35.27471 -35.04563 -31.59277 -28.79968 -27.44018 -23.72839 -21.17590 -20.42119 -19.66543 -19.02796 -18.16404 -17.21848 -17.03184 -16.00539 -15.62742 -15.16144 -14.85178 -14.80208 -14.05394 -13.80312 -13.67902 -13.48184 -13.06249 -12.82364 -12.81840 -12.71395 -12.59307 -11.89929 -11.74914 -11.54474 -11.36006 -10.98378 -9.52704 -9.00903 -8.99717 -7.57387 -0.11908 0.10482 0.71054 1.01416 1.03261 1.12335 1.18957 1.70783 1.86453 2.36326 2.45616 3.20305 3.88880 4.13055 4.33502 4.38858 4.55754 4.75580 4.85742 5.09696 5.14822 5.30847 5.33968 5.56819 5.97151 6.17144 6.48359 8.16687 Molecular weight = 247.01amu Principal moments of inertia in cm(-1) A = 0.038317 B = 0.008469 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.576785 B = 3305.510776 C = 3707.507975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.160 4.160 3 C -0.165 4.165 4 C 0.141 3.859 5 N -1.042 6.042 6 S 2.691 3.309 7 O -1.020 7.020 8 O -1.021 7.021 9 C -1.034 5.034 10 H 0.117 0.883 11 C 0.114 3.886 12 N -0.846 5.846 13 Si 0.822 3.178 14 H -0.240 1.240 15 H -0.217 1.217 16 H -0.231 1.231 17 C -0.297 4.297 18 S 0.144 5.856 19 H 0.095 0.905 20 H 0.081 0.919 21 H 0.092 0.908 22 H 0.168 0.832 23 H 0.430 0.570 24 H 0.293 0.707 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.607 0.973 -2.523 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.278 4.278 3 C -0.197 4.197 4 C 0.034 3.966 5 N -0.794 5.794 6 S 2.792 3.208 7 O -1.010 7.010 8 O -1.010 7.010 9 C -1.167 5.167 10 H 0.135 0.865 11 C -0.104 4.104 12 N -0.476 5.476 13 Si 0.639 3.361 14 H -0.163 1.163 15 H -0.139 1.139 16 H -0.154 1.154 17 C -0.436 4.436 18 S 0.405 5.595 19 H 0.113 0.887 20 H 0.100 0.900 21 H 0.111 0.889 22 H 0.185 0.815 23 H 0.267 0.733 24 H 0.103 0.897 25 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.484 -0.190 -1.698 14.584 hybrid contribution 1.466 1.402 -0.175 2.036 sum -13.018 1.212 -1.873 13.208 Atomic orbital electron populations 1.20518 0.84302 1.04605 1.04359 1.24892 1.01776 0.94694 1.06433 1.20096 0.90249 1.01637 1.07722 1.16650 0.89950 0.86578 1.03454 1.52917 1.38658 1.30148 1.57696 1.00860 0.72427 0.74864 0.72670 1.93457 1.69008 1.52707 1.85850 1.93397 1.80131 1.86289 1.41208 1.30889 1.22244 1.34687 1.28894 0.86491 1.25072 0.94020 0.94247 0.97033 1.69990 1.14281 1.24408 1.38900 0.87537 0.84026 0.82400 0.82162 1.16324 1.13898 1.15356 1.26176 1.05054 0.97227 1.15192 1.83739 0.93731 1.08681 1.73343 0.88682 0.89967 0.88905 0.81504 0.73292 0.89655 0.81792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.37 71.24 0.74 -0.45 15 2 C -0.16 -4.01 6.51 24.59 0.16 -3.85 15 3 C -0.17 -4.82 10.03 21.31 0.21 -4.61 15 4 C 0.14 5.33 6.04 36.81 0.22 5.55 15 5 N -1.04 -41.49 5.90 -53.75 -0.32 -41.81 15 6 S 2.69 136.53 4.05 -56.49 -0.23 136.30 15 7 O -1.02 -54.55 16.02 -128.00 -2.05 -56.60 15 8 O -1.02 -55.78 16.56 -128.00 -2.12 -57.90 15 9 C -1.03 -57.91 8.76 67.73 0.59 -57.32 15 10 H 0.12 6.62 6.35 -2.91 -0.02 6.60 15 11 C 0.11 6.50 5.47 84.65 0.46 6.97 15 12 N -0.85 -48.33 13.96 21.45 0.30 -48.04 15 13 Si 0.82 40.99 26.54 68.60 1.82 42.81 15 14 H -0.24 -11.68 7.11 99.48 0.71 -10.97 15 15 H -0.22 -9.49 7.11 99.48 0.71 -8.78 15 16 H -0.23 -11.87 5.61 99.48 0.56 -11.31 15 17 C -0.30 -11.83 10.38 66.80 0.69 -11.13 15 18 S 0.14 4.22 23.32 -56.49 -1.32 2.90 15 19 H 0.09 1.10 8.14 -2.39 -0.02 1.08 15 20 H 0.08 1.06 8.14 -2.38 -0.02 1.04 15 21 H 0.09 1.14 8.14 -2.38 -0.02 1.12 15 22 H 0.17 3.85 8.06 -2.91 -0.02 3.83 15 23 H 0.43 13.86 8.96 -96.74 -0.87 13.00 15 24 H 0.29 15.06 8.31 -92.70 -0.77 14.29 15 25 H 0.16 7.49 4.93 -2.91 -0.01 7.47 15 Total: -1.00 -69.20 244.75 -0.61 -69.81 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.22 Total: 17.37 kcal Atomic # 6 Polarization: -67.92 SS G_CDS: 3.08 Total: -64.84 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -0.02 Total: -89.85 kcal Atomic # 8 Polarization: -110.33 SS G_CDS: -4.17 Total: -114.50 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.82 Total: 42.81 kcal Atomic # 16 Polarization: 140.75 SS G_CDS: -1.55 Total: 139.20 kcal Total: -69.20 -0.61 -69.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710728288.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.900 kcal (2) G-P(sol) polarization free energy of solvation -69.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds