Wall clock time and date at job start Mon Mar 30 2020 04:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.04827 * 2 1 4 4 C 1.55052 * 110.02699 * 121.39829 * 2 1 3 5 5 S 1.83290 * 102.56449 * 161.72542 * 4 2 1 6 6 O 1.42102 * 109.35158 * 90.18877 * 5 4 2 7 7 O 1.42100 * 109.35207 * 223.25546 * 5 4 2 8 8 C 1.82912 * 97.01933 * 336.78581 * 5 4 2 9 9 C 1.53868 * 110.02806 * 238.59032 * 2 1 3 10 10 H 1.09004 * 109.65053 * 313.38332 * 9 2 1 11 11 N 1.46499 * 109.64817 * 73.67704 * 9 2 1 12 12 C 1.34776 * 120.00578 * 205.73207 * 11 9 2 13 13 O 1.21698 * 119.99662 * 359.97438 * 12 11 9 14 14 C 1.46369 * 120.00369 * 179.97438 * 12 11 9 15 15 H 1.08001 * 120.00334 * 359.97438 * 14 12 11 16 16 C 1.40049 * 119.99777 * 179.97438 * 14 12 11 17 17 N 1.30676 * 120.00245 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99901 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46662 * 90.00229 * 18 16 14 20 20 H 1.48496 * 109.47204 * 210.00304 * 18 16 14 21 21 H 1.48500 * 109.47286 * 330.00983 * 18 16 14 22 22 H 1.09004 * 109.47250 * 300.05367 * 1 2 3 23 23 H 1.08995 * 109.47120 * 60.05585 * 1 2 3 24 24 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 25 25 H 1.08998 * 110.79137 * 43.45592 * 4 2 1 26 26 H 1.08997 * 110.78886 * 279.99787 * 4 2 1 27 27 H 1.09003 * 110.31821 * 116.77713 * 8 5 4 28 28 H 1.08996 * 110.32517 * 238.97298 * 8 5 4 29 29 H 0.97003 * 119.99718 * 25.72212 * 11 9 2 30 30 H 0.97002 * 119.99931 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0610 -0.7590 1.2434 5 16 3.7936 -1.1299 0.7744 6 8 4.6343 -0.0655 1.1981 7 8 4.1050 -2.4668 1.1415 8 6 3.5602 -1.0337 -1.0373 9 6 2.0570 -0.7534 -1.2338 10 1 1.5201 -1.6955 -1.3450 11 7 1.8614 0.0663 -2.4322 12 6 1.7470 -0.5216 -3.6395 13 8 1.8066 -1.7335 -3.7343 14 6 1.5510 0.2973 -4.8368 15 1 1.4976 1.3727 -4.7527 16 6 1.4326 -0.3137 -6.0914 17 7 1.4967 -1.6149 -6.1931 18 14 1.1818 0.7314 -7.6193 19 1 2.5025 1.0910 -8.1952 20 1 0.3974 -0.0354 -8.6202 21 1 0.4462 1.9695 -7.2569 22 1 -0.3634 0.5147 0.8895 23 1 -0.3633 0.5129 -0.8904 24 1 -0.3633 -1.0277 0.0005 25 1 1.4986 -1.6785 1.4048 26 1 2.0273 -0.1233 2.1282 27 1 4.1544 -0.2198 -1.4527 28 1 3.8332 -1.9796 -1.5049 29 1 1.8141 1.0322 -2.3566 30 1 1.4143 -2.0381 -7.0621 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712297673.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:10 Heat of formation + Delta-G solvation = -147.673733 kcal Electronic energy + Delta-G solvation = -16404.311631 eV Core-core repulsion = 13518.287249 eV Total energy + Delta-G solvation = -2886.024382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99330 -38.11826 -37.72990 -37.06785 -34.69339 -33.66379 -31.14762 -28.76743 -28.02849 -24.77536 -21.96004 -21.48705 -19.85868 -19.15520 -17.84711 -17.56185 -17.30248 -16.71610 -16.21382 -15.93737 -15.25508 -15.05167 -14.49195 -14.35724 -14.12720 -13.56292 -13.30868 -13.23037 -13.13145 -12.96006 -12.83049 -12.63170 -12.58287 -12.18290 -12.09813 -12.02430 -11.55116 -11.28258 -10.93786 -9.86617 -9.54317 -8.30002 -6.85971 -0.91653 1.40678 1.41051 1.56292 1.57505 2.23571 2.45000 2.63242 2.89228 3.18144 3.37051 3.55033 3.68245 3.85168 4.00762 4.02407 4.47169 4.53529 4.73977 4.80833 4.95757 5.06940 5.14977 5.32287 5.40636 5.87322 6.20192 6.25049 6.87142 7.53684 8.48876 8.66777 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.039976 B = 0.005950 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.244914 B = 4704.590420 C = 4934.482752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.120 0.880 4 C -0.550 4.550 5 S 2.411 3.589 6 O -0.967 6.967 7 O -0.980 6.980 8 C -0.608 4.608 9 C 0.158 3.842 10 H 0.073 0.927 11 N -0.739 5.739 12 C 0.541 3.459 13 O -0.628 6.628 14 C -0.573 4.573 15 H 0.090 0.910 16 C 0.029 3.971 17 N -0.821 5.821 18 Si 0.995 3.005 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.247 1.247 22 H 0.092 0.908 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.159 0.841 26 H 0.179 0.821 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.399 0.601 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 6.793 12.308 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.138 0.862 4 C -0.683 4.683 5 S 2.598 3.402 6 O -0.964 6.964 7 O -0.978 6.978 8 C -0.738 4.738 9 C 0.050 3.950 10 H 0.091 0.909 11 N -0.393 5.393 12 C 0.346 3.654 13 O -0.515 6.515 14 C -0.610 4.610 15 H 0.108 0.892 16 C -0.186 4.186 17 N -0.451 5.451 18 Si 0.814 3.186 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.170 1.170 22 H 0.111 0.889 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.177 0.823 26 H 0.197 0.803 27 H 0.155 0.845 28 H 0.134 0.866 29 H 0.234 0.766 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.162 5.550 12.690 13.900 hybrid contribution -0.442 0.406 -1.521 1.635 sum -1.604 5.957 11.169 12.760 Atomic orbital electron populations 1.21713 0.91564 1.02854 1.03250 1.22077 0.99885 1.00597 0.88609 0.86160 1.30547 1.18715 1.12127 1.06898 1.08266 0.80173 0.73759 0.78001 1.93555 1.65979 1.56820 1.80048 1.93541 1.84693 1.37937 1.81587 1.31028 1.06551 1.11168 1.25054 1.21160 0.90022 0.96574 0.87240 0.90914 1.45732 1.79211 1.09293 1.05068 1.18543 0.76018 0.87437 0.83437 1.90570 1.57387 1.16885 1.86618 1.21452 1.53399 0.94894 0.91220 0.89239 1.26933 0.91570 0.96085 1.04009 1.70180 1.36604 1.12165 1.26142 0.85061 0.79140 0.78612 0.75756 1.18947 1.20029 1.17032 0.88921 0.92798 0.92557 0.82323 0.80306 0.84539 0.86584 0.76586 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.18 71.98 0.66 -1.96 16 2 C -0.09 -1.86 2.68 -9.80 -0.03 -1.89 16 3 H 0.12 1.93 8.12 -2.39 -0.02 1.91 16 4 C -0.55 -8.49 6.67 72.68 0.48 -8.01 16 5 S 2.41 59.26 6.10 -56.49 -0.34 58.92 16 6 O -0.97 -28.34 18.15 -127.47 -2.31 -30.65 16 7 O -0.98 -31.53 18.15 -127.47 -2.31 -33.84 16 8 C -0.61 -18.86 6.92 72.38 0.50 -18.36 16 9 C 0.16 5.12 2.27 45.68 0.10 5.23 16 10 H 0.07 2.75 7.50 -2.38 -0.02 2.73 16 11 N -0.74 -29.26 4.97 -443.54 -2.20 -31.46 16 12 C 0.54 29.39 7.73 86.36 0.67 30.06 16 13 O -0.63 -40.01 14.67 -4.34 -0.06 -40.08 16 14 C -0.57 -30.94 9.54 24.83 0.24 -30.70 16 15 H 0.09 4.28 7.85 -2.91 -0.02 4.26 16 16 C 0.03 1.58 5.50 85.30 0.47 2.05 16 17 N -0.82 -49.19 11.83 21.84 0.26 -48.94 16 18 Si 0.99 39.78 29.56 68.60 2.03 41.80 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 21 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 22 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.16 2.02 8.10 -2.39 -0.02 2.00 16 26 H 0.18 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.14 4.16 8.07 -2.39 -0.02 4.14 16 28 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 29 H 0.40 13.13 8.58 -92.71 -0.80 12.34 16 30 H 0.27 14.92 8.29 -92.71 -0.77 14.15 16 Total: -1.00 -83.61 272.45 -1.49 -85.11 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.36 Total: 22.72 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 3.10 Total: -23.58 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.95 Total: -80.40 kcal Atomic # 8 Polarization: -99.88 SS G_CDS: -4.69 Total: -104.57 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.80 kcal Atomic # 16 Polarization: 59.26 SS G_CDS: -0.34 Total: 58.92 kcal Total: -83.61 -1.49 -85.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712297673.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.565 kcal (2) G-P(sol) polarization free energy of solvation -83.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds