Wall clock time and date at job start Mon Mar 30 2020 03:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48496 * 109.46966 * 239.99558 * 3 2 1 5 5 H 1.48494 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47094 * 120.00062 * 3 2 1 7 7 C 1.37877 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00216 * 179.97438 * 7 2 1 9 9 S 1.76207 * 120.00100 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40233 * 66.45235 * 9 7 2 11 11 O 1.42103 * 106.39866 * 293.53981 * 9 7 2 12 12 N 1.65594 * 107.22031 * 179.97438 * 9 7 2 13 13 C 1.46502 * 119.99930 * 64.99642 * 12 9 7 14 14 H 1.09002 * 115.55836 * 0.58539 * 13 12 9 15 15 C 1.53124 * 117.51126 * 146.31929 * 13 12 9 16 16 C 1.52463 * 117.51399 * 214.84833 * 13 12 9 17 17 C 1.53253 * 128.58661 * 134.90979 * 16 13 12 18 18 C 1.53884 * 86.88536 * 194.88792 * 17 16 13 19 19 O 1.42901 * 113.66406 * 270.38341 * 18 17 16 20 20 C 1.53255 * 128.58200 * 10.11041 * 16 13 12 21 21 H 0.96993 * 119.99756 * 359.97438 * 1 2 3 22 22 H 0.96998 * 119.99937 * 245.00291 * 12 9 7 23 23 H 1.09004 * 117.51267 * 214.93872 * 15 13 12 24 24 H 1.09004 * 117.51324 * 0.04293 * 15 13 12 25 25 H 1.09000 * 113.64538 * 309.38960 * 17 16 13 26 26 H 1.09011 * 113.64293 * 80.38953 * 17 16 13 27 27 H 1.09004 * 113.58951 * 139.57317 * 18 17 16 28 28 H 0.96701 * 113.99835 * 277.70140 * 19 18 17 29 29 H 1.08999 * 113.65298 * 279.60951 * 20 16 13 30 30 H 1.09002 * 113.64586 * 50.53183 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 16 1.1235 -2.7201 0.0005 10 8 0.4518 -2.7955 -1.2493 11 8 0.4510 -2.7950 1.2501 12 7 2.2482 -3.9355 0.0005 13 6 3.1393 -4.1089 1.1504 14 1 2.9928 -3.4045 1.9693 15 6 3.5580 -5.5367 1.5118 16 6 4.5623 -4.5813 0.8738 17 6 5.8765 -4.0475 1.4541 18 6 6.5891 -4.8209 0.3307 19 8 6.9309 -6.1624 0.6853 20 6 5.2816 -4.7105 -0.4733 21 1 -0.4849 0.8400 0.0004 22 1 2.3171 -4.5325 -0.7608 23 1 3.6869 -5.7715 2.5684 24 1 3.1710 -6.3467 0.8935 25 1 5.9818 -2.9655 1.3749 26 1 6.0981 -4.4240 2.4528 27 1 7.4219 -4.2758 -0.1138 28 1 7.7517 -6.2386 1.1908 29 1 5.0265 -5.6184 -1.0199 30 1 5.2201 -3.8135 -1.0896 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724968119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:26 Heat of formation + Delta-G solvation = -92.312059 kcal Electronic energy + Delta-G solvation = -16360.849098 eV Core-core repulsion = 13477.225379 eV Total energy + Delta-G solvation = -2883.623720 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68191 -36.31118 -35.16819 -33.94130 -33.43752 -33.03503 -30.30699 -26.12133 -25.70718 -22.48798 -21.50711 -19.03639 -18.58718 -17.51764 -17.12921 -16.17719 -15.83777 -15.01535 -14.74611 -14.25302 -13.98928 -13.60714 -13.14521 -13.01699 -12.41687 -12.04277 -11.72205 -11.48942 -11.28237 -11.20301 -10.83867 -10.68252 -10.59429 -10.31757 -10.25320 -10.18233 -9.86349 -9.54459 -9.23497 -8.83903 -8.14896 -6.69339 -5.31302 2.32375 3.07985 3.12691 3.17850 3.96227 4.05647 4.18787 4.47846 4.64812 4.68510 4.83868 4.92265 5.06863 5.23481 5.44119 5.81177 5.82669 5.84344 5.88900 5.99849 6.07640 6.20890 6.24320 6.41258 6.58224 6.93796 7.33194 7.58678 7.89466 7.98930 8.89424 10.24850 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.007604 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.349775 B = 3681.300485 C = 4310.504560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.264 1.264 7 C -1.019 5.019 8 H 0.103 0.897 9 S 2.716 3.284 10 O -1.006 7.006 11 O -1.005 7.005 12 N -1.104 6.104 13 C 0.127 3.873 14 H 0.136 0.864 15 C -0.158 4.158 16 C -0.171 4.171 17 C -0.129 4.129 18 C 0.081 3.919 19 O -0.549 6.549 20 C -0.091 4.091 21 H 0.291 0.709 22 H 0.402 0.598 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.375 0.625 29 H 0.073 0.927 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.124 -6.583 2.088 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.152 5.152 8 H 0.121 0.879 9 S 2.816 3.184 10 O -0.997 6.997 11 O -0.995 6.995 12 N -0.853 5.853 13 C 0.017 3.983 14 H 0.154 0.846 15 C -0.197 4.197 16 C -0.174 4.174 17 C -0.167 4.167 18 C 0.022 3.978 19 O -0.354 6.354 20 C -0.128 4.128 21 H 0.102 0.898 22 H 0.232 0.768 23 H 0.116 0.884 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.222 0.778 29 H 0.092 0.908 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.377 -6.631 1.913 13.307 hybrid contribution 1.557 1.051 -0.023 1.879 sum 12.934 -5.579 1.890 14.212 Atomic orbital electron populations 1.69892 1.06782 1.30818 1.40047 1.24748 0.94449 1.00785 0.88546 0.86205 0.79884 0.79766 0.79712 1.18908 1.20148 1.18882 1.30534 1.06071 1.11751 1.66890 0.87918 1.00421 0.71996 0.73187 0.72836 1.93377 1.73013 1.87618 1.45658 1.93367 1.72754 1.87444 1.45904 1.55624 1.54017 1.50455 1.25197 1.21128 0.89056 0.97254 0.90814 0.84637 1.23268 1.01104 0.94436 1.00911 1.22620 0.91114 1.05645 0.97981 1.23162 0.94304 1.00483 0.98719 1.22635 0.95999 0.82914 0.96261 1.86494 1.46188 1.26144 1.76574 1.22498 0.92693 1.02644 0.95002 0.89838 0.76756 0.88382 0.88669 0.88739 0.91016 0.91607 0.77795 0.90847 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.86 13.19 55.43 0.73 -24.13 16 2 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -1.02 -27.70 9.72 30.60 0.30 -27.40 16 8 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 9 S 2.72 71.85 5.00 -107.50 -0.54 71.32 16 10 O -1.01 -29.56 18.02 -57.17 -1.03 -30.59 16 11 O -1.00 -29.38 17.77 -57.17 -1.02 -30.40 16 12 N -1.10 -22.16 6.02 -5.07 -0.03 -22.19 16 13 C 0.13 2.25 6.47 -68.14 -0.44 1.81 16 14 H 0.14 2.48 8.10 -51.93 -0.42 2.06 16 15 C -0.16 -2.32 10.46 -26.88 -0.28 -2.60 16 16 C -0.17 -2.49 2.96 -154.73 -0.46 -2.95 16 17 C -0.13 -1.55 7.93 -26.14 -0.21 -1.76 16 18 C 0.08 0.91 5.27 -25.81 -0.14 0.77 16 19 O -0.55 -6.10 13.60 -35.23 -0.48 -6.58 16 20 C -0.09 -1.21 7.91 -26.13 -0.21 -1.42 16 21 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 22 H 0.40 7.12 8.96 -34.46 -0.31 6.82 16 23 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.38 2.38 9.12 45.56 0.42 2.80 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -35.74 279.93 -7.51 -43.25 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -2.82 Total: 9.69 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: -1.53 Total: -29.97 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.70 Total: -46.32 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -2.53 Total: -67.57 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 71.85 SS G_CDS: -0.54 Total: 71.32 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -35.74 -7.51 -43.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724968119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.061 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds