Wall clock time and date at job start Mon Mar 30 2020 03:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48496 * 109.46966 * 239.99558 * 3 2 1 5 5 H 1.48494 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47094 * 120.00062 * 3 2 1 7 7 C 1.37877 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00216 * 179.97438 * 7 2 1 9 9 S 1.76207 * 120.00100 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40233 * 66.45235 * 9 7 2 11 11 O 1.42103 * 106.39866 * 293.53981 * 9 7 2 12 12 N 1.65594 * 107.22031 * 179.97438 * 9 7 2 13 13 C 1.46502 * 119.99930 * 64.99642 * 12 9 7 14 14 H 1.09002 * 115.55836 * 0.58539 * 13 12 9 15 15 C 1.53124 * 117.51126 * 146.31929 * 13 12 9 16 16 C 1.52463 * 117.51399 * 214.84833 * 13 12 9 17 17 C 1.53253 * 128.58661 * 134.90979 * 16 13 12 18 18 C 1.53884 * 86.88536 * 194.88792 * 17 16 13 19 19 O 1.42901 * 113.66406 * 270.38341 * 18 17 16 20 20 C 1.53255 * 128.58200 * 10.11041 * 16 13 12 21 21 H 0.96993 * 119.99756 * 359.97438 * 1 2 3 22 22 H 0.96998 * 119.99937 * 245.00291 * 12 9 7 23 23 H 1.09004 * 117.51267 * 214.93872 * 15 13 12 24 24 H 1.09004 * 117.51324 * 0.04293 * 15 13 12 25 25 H 1.09000 * 113.64538 * 309.38960 * 17 16 13 26 26 H 1.09011 * 113.64293 * 80.38953 * 17 16 13 27 27 H 1.09004 * 113.58951 * 139.57317 * 18 17 16 28 28 H 0.96701 * 113.99835 * 277.70140 * 19 18 17 29 29 H 1.08999 * 113.65298 * 279.60951 * 20 16 13 30 30 H 1.09002 * 113.64586 * 50.53183 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 16 1.1235 -2.7201 0.0005 10 8 0.4518 -2.7955 -1.2493 11 8 0.4510 -2.7950 1.2501 12 7 2.2482 -3.9355 0.0005 13 6 3.1393 -4.1089 1.1504 14 1 2.9928 -3.4045 1.9693 15 6 3.5580 -5.5367 1.5118 16 6 4.5623 -4.5813 0.8738 17 6 5.8765 -4.0475 1.4541 18 6 6.5891 -4.8209 0.3307 19 8 6.9309 -6.1624 0.6853 20 6 5.2816 -4.7105 -0.4733 21 1 -0.4849 0.8400 0.0004 22 1 2.3171 -4.5325 -0.7608 23 1 3.6869 -5.7715 2.5684 24 1 3.1710 -6.3467 0.8935 25 1 5.9818 -2.9655 1.3749 26 1 6.0981 -4.4240 2.4528 27 1 7.4219 -4.2758 -0.1138 28 1 7.7517 -6.2386 1.1908 29 1 5.0265 -5.6184 -1.0199 30 1 5.2201 -3.8135 -1.0896 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724968119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:26 Heat of formation + Delta-G solvation = -123.394668 kcal Electronic energy + Delta-G solvation = -16362.196942 eV Core-core repulsion = 13477.225379 eV Total energy + Delta-G solvation = -2884.971563 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.73816 -37.51793 -37.24666 -36.15632 -35.20379 -34.53742 -31.69585 -28.25039 -26.68198 -23.46528 -22.85028 -21.06698 -19.60880 -19.41107 -18.36988 -17.98222 -17.17958 -16.91043 -15.98322 -15.89385 -15.57141 -15.23137 -14.39410 -14.07681 -13.98987 -13.52874 -13.34892 -12.99282 -12.87605 -12.70330 -12.58038 -12.49208 -12.41995 -12.31657 -11.85570 -11.42900 -11.22402 -10.97231 -10.75075 -10.70934 -9.58986 -8.74066 -7.47648 0.32745 1.35055 1.37410 1.50393 2.21268 2.59031 2.84861 2.90489 3.31035 3.58234 3.66985 3.77784 3.84878 3.88975 4.20463 4.36811 4.53564 4.58063 4.85902 4.88023 4.90430 4.94123 5.16401 5.24714 5.27641 5.40050 5.44231 5.91847 6.33598 6.78798 7.00875 8.21987 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.027489 B = 0.007604 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.349775 B = 3681.300485 C = 4310.504560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.992 3.008 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.248 1.248 7 C -1.035 5.035 8 H 0.123 0.877 9 S 2.722 3.278 10 O -1.046 7.046 11 O -1.043 7.043 12 N -1.090 6.090 13 C 0.084 3.916 14 H 0.122 0.878 15 C -0.146 4.146 16 C -0.163 4.163 17 C -0.126 4.126 18 C 0.096 3.904 19 O -0.566 6.566 20 C -0.103 4.103 21 H 0.299 0.701 22 H 0.413 0.587 23 H 0.116 0.884 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.397 0.603 29 H 0.069 0.931 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.065 -6.281 2.394 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.171 1.171 7 C -1.169 5.169 8 H 0.141 0.859 9 S 2.823 3.177 10 O -1.036 7.036 11 O -1.033 7.033 12 N -0.844 5.844 13 C -0.025 4.025 14 H 0.140 0.860 15 C -0.185 4.185 16 C -0.165 4.165 17 C -0.164 4.164 18 C 0.037 3.963 19 O -0.374 6.374 20 C -0.140 4.140 21 H 0.109 0.891 22 H 0.246 0.754 23 H 0.134 0.866 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.247 0.753 29 H 0.088 0.912 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.334 -6.368 2.228 15.843 hybrid contribution 0.673 0.828 -0.097 1.071 sum 15.007 -5.540 2.130 16.139 Atomic orbital electron populations 1.69996 1.08869 1.32409 1.41467 1.26054 0.95359 1.05465 0.87531 0.85143 0.78750 0.74342 0.80822 1.17369 1.19014 1.17118 1.30845 1.07200 1.12180 1.66653 0.85910 0.99833 0.72459 0.73951 0.71420 1.93311 1.74901 1.88433 1.46960 1.93308 1.74532 1.88231 1.47205 1.54895 1.53649 1.49214 1.26627 1.21322 0.91452 0.99545 0.90150 0.86039 1.23344 1.00184 0.92734 1.02219 1.22874 0.90247 1.03787 0.99640 1.23250 0.92321 1.00972 0.99856 1.22491 0.95747 0.83139 0.94969 1.86442 1.47893 1.25951 1.77108 1.22634 0.94265 1.02557 0.94590 0.89118 0.75407 0.86565 0.88280 0.88268 0.89664 0.88968 0.75268 0.91230 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.71 13.19 21.45 0.28 -53.43 16 2 C 0.07 3.80 5.46 84.65 0.46 4.26 16 3 Si 0.99 40.75 29.54 68.60 2.03 42.77 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 7 C -1.03 -56.55 9.72 67.73 0.66 -55.89 16 8 H 0.12 5.97 7.81 -2.91 -0.02 5.95 16 9 S 2.72 148.15 5.00 -56.49 -0.28 147.87 16 10 O -1.05 -63.56 18.02 -128.00 -2.31 -65.86 16 11 O -1.04 -63.27 17.77 -128.00 -2.27 -65.55 16 12 N -1.09 -44.30 6.02 -169.95 -1.02 -45.32 16 13 C 0.08 2.93 6.47 44.85 0.29 3.22 16 14 H 0.12 4.53 8.10 -2.39 -0.02 4.51 16 15 C -0.15 -4.06 10.46 30.50 0.32 -3.74 16 16 C -0.16 -4.43 2.96 -52.33 -0.16 -4.59 16 17 C -0.13 -2.64 7.93 30.98 0.25 -2.40 16 18 C 0.10 1.81 5.27 31.19 0.16 1.97 16 19 O -0.57 -10.55 13.60 -148.98 -2.03 -12.57 16 20 C -0.10 -2.52 7.91 30.98 0.25 -2.28 16 21 H 0.30 16.10 8.31 -92.71 -0.77 15.33 16 22 H 0.41 14.79 8.96 -96.75 -0.87 13.92 16 23 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 25 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.40 3.49 9.12 -74.06 -0.68 2.81 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -78.11 279.93 -3.74 -81.85 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.37 Total: 29.67 kcal Atomic # 6 Polarization: -61.67 SS G_CDS: 2.23 Total: -59.44 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -0.74 Total: -98.75 kcal Atomic # 8 Polarization: -137.38 SS G_CDS: -6.61 Total: -143.98 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 148.15 SS G_CDS: -0.28 Total: 147.87 kcal Total: -78.11 -3.74 -81.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724968119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.544 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds