Wall clock time and date at job start Mon Mar 30 2020 03:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46781 * 2 1 4 4 C 1.50710 * 109.47078 * 175.00140 * 3 2 1 5 5 N 1.27937 * 119.99865 * 55.14809 * 4 3 2 6 6 Si 1.86799 * 119.99795 * 234.88088 * 4 3 2 7 7 H 1.48498 * 109.46985 * 185.36243 * 6 4 3 8 8 H 1.48502 * 109.47227 * 305.36358 * 6 4 3 9 9 H 1.48500 * 109.47092 * 65.36488 * 6 4 3 10 10 S 1.81398 * 109.47347 * 294.99860 * 3 2 1 11 11 O 1.52202 * 108.33374 * 306.50600 * 10 3 2 12 12 O 1.42100 * 114.64828 * 67.61044 * 10 3 2 13 13 N 1.65590 * 108.33479 * 188.71531 * 10 3 2 14 14 N 1.23639 * 123.49914 * 359.70653 * 13 10 3 15 15 C 1.47243 * 106.89636 * 179.87172 * 14 13 10 16 16 H 1.08994 * 110.43306 * 118.79487 * 15 14 13 17 17 N 1.46907 * 110.92832 * 241.71328 * 15 14 13 18 18 N 1.47424 * 103.52002 * 0.36818 * 15 14 13 19 19 C 1.29305 * 105.18988 * 359.78947 * 18 15 14 20 20 H 1.08998 * 109.47295 * 60.00303 * 1 2 3 21 21 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47230 * 299.99904 * 1 2 3 23 23 H 1.09001 * 109.47556 * 240.00184 * 2 1 3 24 24 H 1.08998 * 109.47295 * 119.99697 * 2 1 3 25 25 H 1.09002 * 109.47384 * 55.00358 * 3 2 1 26 26 H 0.97006 * 120.00446 * 359.73613 * 5 4 3 27 27 H 0.96708 * 114.00003 * 293.75666 * 11 10 3 28 28 H 1.00899 * 111.00133 * 175.74352 * 17 15 14 29 29 H 1.00907 * 110.99433 * 299.68902 * 17 15 14 30 30 H 1.07994 * 124.30370 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5419 1.4444 0.1238 5 7 4.2534 0.7859 -0.7110 6 14 4.3650 2.4143 1.4917 7 1 5.8390 2.3602 1.3190 8 1 3.9119 3.8274 1.4385 9 1 3.9987 1.8261 2.8051 10 16 1.5600 2.2536 -1.5500 11 8 2.0415 1.3932 -2.7095 12 8 0.1629 2.4650 -1.7004 13 7 2.3203 3.7226 -1.6263 14 7 3.0737 4.1478 -0.7430 15 6 3.5445 5.4718 -1.1827 16 1 3.2346 6.2403 -0.4747 17 7 5.0042 5.4815 -1.3481 18 7 2.8738 5.6621 -2.4817 19 6 2.1765 4.5885 -2.6635 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6053 1.9816 0.8419 26 1 3.8259 0.2823 -1.4215 27 1 3.0040 1.3384 -2.7856 28 1 5.3206 6.3664 -1.7154 29 1 5.4679 5.2643 -0.4786 30 1 1.5580 4.4037 -3.5293 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725550944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:09 Heat of formation + Delta-G solvation = 87.945741 kcal Electronic energy + Delta-G solvation = -17917.232761 eV Core-core repulsion = 14994.636707 eV Total energy + Delta-G solvation = -2922.596054 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 249.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.89515 -38.80916 -37.82413 -37.17947 -35.92838 -34.23016 -34.17924 -30.11515 -28.57625 -24.25483 -23.88828 -23.43135 -21.60306 -21.43716 -20.60587 -18.47518 -17.79661 -17.59822 -17.31652 -16.62764 -16.25010 -16.10616 -15.64003 -15.09821 -14.96940 -14.82866 -14.37154 -14.04284 -13.68901 -13.43658 -13.39948 -12.85781 -12.74790 -12.47400 -12.23992 -12.20154 -12.15310 -11.74496 -11.55255 -10.98088 -10.41469 -10.20258 -7.57329 -1.75931 0.61402 0.63271 1.01525 1.25263 1.49273 1.68252 1.94305 2.02622 2.35063 2.56340 2.87640 3.06788 3.52617 3.58353 3.64295 3.73965 3.97845 4.34662 4.39300 4.48649 4.60175 4.72276 4.77052 4.95143 5.01629 5.23203 5.29674 5.43962 5.79887 6.36539 6.76682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 C -0.562 4.562 4 C 0.022 3.978 5 N -0.649 5.649 6 Si 1.065 2.935 7 H -0.247 1.247 8 H -0.229 1.229 9 H -0.257 1.257 10 S 1.938 4.062 11 O -0.898 6.898 12 O -0.878 6.878 13 N -0.427 5.427 14 N -0.182 5.182 15 C 0.281 3.719 16 H 0.149 0.851 17 N -0.817 5.817 18 N -0.443 5.443 19 C 0.234 3.766 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.133 0.867 26 H 0.314 0.686 27 H 0.431 0.569 28 H 0.367 0.633 29 H 0.366 0.634 30 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 3.049 2.264 4.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.138 4.138 3 C -0.673 4.673 4 C -0.223 4.223 5 N -0.264 5.264 6 Si 0.878 3.122 7 H -0.170 1.170 8 H -0.152 1.152 9 H -0.182 1.182 10 S 2.021 3.979 11 O -0.748 6.748 12 O -0.863 6.863 13 N -0.343 5.343 14 N -0.091 5.091 15 C -0.010 4.010 16 H 0.165 0.835 17 N -0.357 5.357 18 N -0.166 5.166 19 C -0.070 4.070 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.096 0.904 25 H 0.151 0.849 26 H 0.132 0.868 27 H 0.295 0.705 28 H 0.184 0.816 29 H 0.183 0.817 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.603 3.039 1.857 5.066 hybrid contribution -1.416 -0.598 -0.015 1.537 sum 2.187 2.440 1.842 3.759 Atomic orbital electron populations 1.22106 0.94655 1.03165 1.03566 1.21221 0.96629 0.92600 1.03364 1.29700 1.03114 1.07680 1.26809 1.31294 0.91951 0.96223 1.02792 1.69619 1.42631 1.07909 1.06248 0.83657 0.78722 0.77915 0.71867 1.16957 1.15248 1.18165 1.58955 0.87781 0.73953 0.77185 1.85234 1.33994 1.83730 1.71879 1.93246 1.31976 1.78843 1.82225 1.63817 1.37482 1.19978 1.13024 1.78629 1.14245 1.09475 1.06788 1.26265 0.92215 0.92238 0.90298 0.83521 1.58784 1.00093 1.41065 1.35768 1.75637 1.06944 1.23027 1.10963 1.27835 0.96586 0.87803 0.94731 0.91450 0.91524 0.91577 0.91780 0.90385 0.84907 0.86756 0.70526 0.81624 0.81741 0.75712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.25 9.68 37.16 0.36 0.11 16 2 C -0.10 -0.02 5.14 -26.73 -0.14 -0.16 16 3 C -0.56 0.34 2.27 -27.88 -0.06 0.28 16 4 C 0.02 -0.02 3.60 -13.90 -0.05 -0.07 16 5 N -0.65 0.14 12.92 56.23 0.73 0.86 16 6 Si 1.07 -1.85 27.76 -169.99 -4.72 -6.57 16 7 H -0.25 0.17 7.11 56.52 0.40 0.57 16 8 H -0.23 0.81 6.19 56.52 0.35 1.16 16 9 H -0.26 0.27 7.11 56.52 0.40 0.67 16 10 S 1.94 0.76 4.14 -107.50 -0.44 0.31 16 11 O -0.90 -0.13 12.86 -58.55 -0.75 -0.88 16 12 O -0.88 -4.28 16.24 -58.55 -0.95 -5.23 16 13 N -0.43 0.59 3.62 29.54 0.11 0.70 16 14 N -0.18 0.35 7.88 -9.35 -0.07 0.28 16 15 C 0.28 -0.67 5.70 -266.35 -1.52 -2.19 16 16 H 0.15 -0.63 8.14 -51.93 -0.42 -1.06 16 17 N -0.82 2.66 9.76 -9.42 -0.09 2.57 16 18 N -0.44 0.38 11.89 -61.12 -0.73 -0.35 16 19 C 0.23 -0.39 12.21 -90.60 -1.11 -1.50 16 20 H 0.07 0.23 5.74 -51.93 -0.30 -0.07 16 21 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 22 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 23 H 0.06 0.00 7.13 -51.93 -0.37 -0.37 16 24 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 25 H 0.13 -0.29 7.52 -51.92 -0.39 -0.68 16 26 H 0.31 -0.40 6.01 -40.82 -0.25 -0.64 16 27 H 0.43 -1.40 7.13 67.37 0.48 -0.92 16 28 H 0.37 -1.61 9.08 -39.29 -0.36 -1.96 16 29 H 0.37 -1.79 9.08 -39.29 -0.36 -2.15 16 30 H 0.23 -0.99 8.06 -52.49 -0.42 -1.41 16 LS Contribution 258.40 15.07 3.89 3.89 Total: 0.00 -7.97 258.40 -8.05 -16.01 By element: Atomic # 1 Polarization: -5.57 SS G_CDS: -2.50 Total: -8.07 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.51 Total: -3.52 kcal Atomic # 7 Polarization: 4.12 SS G_CDS: -0.06 Total: 4.06 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -1.70 Total: -6.11 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: -4.72 Total: -6.57 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -0.44 Total: 0.31 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -7.97 -8.05 -16.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725550944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.957 kcal (2) G-P(sol) polarization free energy of solvation -7.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds