Wall clock time and date at job start Mon Mar 30 2020 03:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46781 * 2 1 4 4 C 1.50710 * 109.47078 * 175.00140 * 3 2 1 5 5 N 1.27937 * 119.99865 * 55.14809 * 4 3 2 6 6 Si 1.86799 * 119.99795 * 234.88088 * 4 3 2 7 7 H 1.48498 * 109.46985 * 185.36243 * 6 4 3 8 8 H 1.48502 * 109.47227 * 305.36358 * 6 4 3 9 9 H 1.48500 * 109.47092 * 65.36488 * 6 4 3 10 10 S 1.81398 * 109.47347 * 294.99860 * 3 2 1 11 11 O 1.52202 * 108.33374 * 306.50600 * 10 3 2 12 12 O 1.42100 * 114.64828 * 67.61044 * 10 3 2 13 13 N 1.65590 * 108.33479 * 188.71531 * 10 3 2 14 14 N 1.23639 * 123.49914 * 359.70653 * 13 10 3 15 15 C 1.47243 * 106.89636 * 179.87172 * 14 13 10 16 16 H 1.08994 * 110.43306 * 118.79487 * 15 14 13 17 17 N 1.46907 * 110.92832 * 241.71328 * 15 14 13 18 18 N 1.47424 * 103.52002 * 0.36818 * 15 14 13 19 19 C 1.29305 * 105.18988 * 359.78947 * 18 15 14 20 20 H 1.08998 * 109.47295 * 60.00303 * 1 2 3 21 21 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47230 * 299.99904 * 1 2 3 23 23 H 1.09001 * 109.47556 * 240.00184 * 2 1 3 24 24 H 1.08998 * 109.47295 * 119.99697 * 2 1 3 25 25 H 1.09002 * 109.47384 * 55.00358 * 3 2 1 26 26 H 0.97006 * 120.00446 * 359.73613 * 5 4 3 27 27 H 0.96708 * 114.00003 * 293.75666 * 11 10 3 28 28 H 1.00899 * 111.00133 * 175.74352 * 17 15 14 29 29 H 1.00907 * 110.99433 * 299.68902 * 17 15 14 30 30 H 1.07994 * 124.30370 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5419 1.4444 0.1238 5 7 4.2534 0.7859 -0.7110 6 14 4.3650 2.4143 1.4917 7 1 5.8390 2.3602 1.3190 8 1 3.9119 3.8274 1.4385 9 1 3.9987 1.8261 2.8051 10 16 1.5600 2.2536 -1.5500 11 8 2.0415 1.3932 -2.7095 12 8 0.1629 2.4650 -1.7004 13 7 2.3203 3.7226 -1.6263 14 7 3.0737 4.1478 -0.7430 15 6 3.5445 5.4718 -1.1827 16 1 3.2346 6.2403 -0.4747 17 7 5.0042 5.4815 -1.3481 18 7 2.8738 5.6621 -2.4817 19 6 2.1765 4.5885 -2.6635 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6053 1.9816 0.8419 26 1 3.8259 0.2823 -1.4215 27 1 3.0040 1.3384 -2.7856 28 1 5.3206 6.3664 -1.7154 29 1 5.4679 5.2643 -0.4786 30 1 1.5580 4.4037 -3.5293 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725550944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:08 Heat of formation + Delta-G solvation = 82.474418 kcal Electronic energy + Delta-G solvation = -17917.470015 eV Core-core repulsion = 14994.636707 eV Total energy + Delta-G solvation = -2922.833308 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 249.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.87099 -38.69593 -37.71145 -37.18951 -35.80534 -34.15372 -34.12362 -29.98174 -28.52173 -24.16715 -23.77904 -23.37897 -21.49685 -21.30960 -20.51361 -18.37734 -17.69880 -17.46415 -17.19211 -16.46272 -16.16717 -15.97669 -15.58251 -15.02131 -14.86659 -14.69949 -14.31862 -13.99711 -13.59466 -13.44938 -13.39549 -12.85813 -12.72853 -12.42746 -12.18871 -12.17170 -12.09466 -11.65703 -11.44797 -10.88828 -10.17908 -10.10938 -7.48689 -1.62477 0.70891 0.74733 1.13805 1.38194 1.62868 1.82536 2.05811 2.18318 2.43357 2.75210 2.96844 3.26224 3.65137 3.68871 3.80522 3.83777 3.97666 4.35555 4.51441 4.57209 4.60371 4.79283 4.85708 4.90656 5.03174 5.17347 5.52780 5.71218 6.04097 6.51118 6.88649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 C -0.568 4.568 4 C 0.022 3.978 5 N -0.665 5.665 6 Si 1.073 2.927 7 H -0.261 1.261 8 H -0.200 1.200 9 H -0.267 1.267 10 S 1.907 4.093 11 O -0.906 6.906 12 O -0.933 6.933 13 N -0.409 5.409 14 N -0.143 5.143 15 C 0.265 3.735 16 H 0.182 0.818 17 N -0.817 5.817 18 N -0.451 5.451 19 C 0.225 3.775 20 H 0.045 0.955 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.143 0.857 26 H 0.317 0.683 27 H 0.440 0.560 28 H 0.377 0.623 29 H 0.378 0.622 30 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 4.600 2.758 6.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.139 4.139 3 C -0.678 4.678 4 C -0.221 4.221 5 N -0.280 5.280 6 Si 0.886 3.114 7 H -0.184 1.184 8 H -0.122 1.122 9 H -0.192 1.192 10 S 1.991 4.009 11 O -0.760 6.760 12 O -0.919 6.919 13 N -0.324 5.324 14 N -0.052 5.052 15 C -0.026 4.026 16 H 0.197 0.803 17 N -0.360 5.360 18 N -0.174 5.174 19 C -0.078 4.078 20 H 0.064 0.936 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.161 0.839 26 H 0.135 0.865 27 H 0.305 0.695 28 H 0.195 0.805 29 H 0.196 0.804 30 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.801 4.609 2.357 7.060 hybrid contribution -1.617 -0.853 -0.136 1.833 sum 3.184 3.756 2.220 5.402 Atomic orbital electron populations 1.22117 0.95802 1.03053 1.02719 1.21207 0.95641 0.93700 1.03363 1.29705 1.03139 1.07025 1.27976 1.31552 0.91843 0.96000 1.02662 1.69616 1.43011 1.08586 1.06805 0.83615 0.77577 0.79343 0.70872 1.18432 1.12158 1.19165 1.63328 0.86337 0.74151 0.77054 1.85172 1.34763 1.84007 1.72098 1.93092 1.35851 1.79806 1.83179 1.64628 1.34983 1.20363 1.12380 1.78627 1.10538 1.08676 1.07393 1.26679 0.93272 0.92150 0.90535 0.80279 1.58812 0.98821 1.41837 1.36567 1.75657 1.07124 1.23232 1.11381 1.28339 0.96676 0.87297 0.95517 0.93628 0.91224 0.91067 0.92127 0.89974 0.83861 0.86451 0.69511 0.80533 0.80437 0.73903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 9.68 71.98 0.70 -0.17 16 2 C -0.10 -0.20 5.14 30.59 0.16 -0.04 16 3 C -0.57 0.19 2.27 29.85 0.07 0.26 16 4 C 0.02 -0.04 3.60 88.68 0.32 0.28 16 5 N -0.66 -0.02 12.92 24.11 0.31 0.29 16 6 Si 1.07 -4.63 27.76 68.60 1.90 -2.73 16 7 H -0.26 0.49 7.11 99.48 0.71 1.19 16 8 H -0.20 1.92 6.19 99.48 0.62 2.54 16 9 H -0.27 0.64 7.11 99.48 0.71 1.35 16 10 S 1.91 3.94 4.14 -56.49 -0.23 3.70 16 11 O -0.91 -1.82 12.86 -126.68 -1.63 -3.45 16 12 O -0.93 -11.37 16.24 -126.68 -2.06 -13.43 16 13 N -0.41 1.30 3.62 -60.45 -0.22 1.08 16 14 N -0.14 0.78 7.88 -183.49 -1.45 -0.67 16 15 C 0.26 -1.91 5.70 241.76 1.38 -0.53 16 16 H 0.18 -2.19 8.14 -2.39 -0.02 -2.21 16 17 N -0.82 7.34 9.76 -183.72 -1.79 5.55 16 18 N -0.45 1.51 11.89 -347.27 -4.13 -2.62 16 19 C 0.22 -0.90 12.21 180.34 2.20 1.30 16 20 H 0.04 0.45 5.74 -2.39 -0.01 0.43 16 21 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 22 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 23 H 0.06 0.13 7.13 -2.39 -0.02 0.11 16 24 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.14 -0.54 7.52 -2.39 -0.02 -0.56 16 26 H 0.32 -0.47 6.01 -92.70 -0.56 -1.02 16 27 H 0.44 -2.24 7.13 -87.92 -0.63 -2.86 16 28 H 0.38 -4.23 9.08 -89.69 -0.81 -5.05 16 29 H 0.38 -4.74 9.08 -89.69 -0.81 -5.56 16 30 H 0.25 -2.13 8.06 -2.91 -0.02 -2.15 16 Total: 0.00 -19.15 258.40 -5.41 -24.55 By element: Atomic # 1 Polarization: -12.45 SS G_CDS: -0.93 Total: -13.38 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 4.82 Total: 1.10 kcal Atomic # 7 Polarization: 10.90 SS G_CDS: -7.28 Total: 3.63 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -3.69 Total: -16.88 kcal Atomic # 14 Polarization: -4.63 SS G_CDS: 1.90 Total: -2.73 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -0.23 Total: 3.70 kcal Total: -19.15 -5.41 -24.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725550944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.029 kcal (2) G-P(sol) polarization free energy of solvation -19.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds