Wall clock time and date at job start Mon Mar 30 2020 03:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37098 * 120.00049 * 2 1 4 4 H 1.08000 * 120.00098 * 143.23373 * 3 2 1 5 5 C 1.38952 * 119.99814 * 323.23701 * 3 2 1 6 6 N 1.31414 * 119.99510 * 167.60482 * 5 3 2 7 7 Si 1.86795 * 120.00245 * 347.60049 * 5 3 2 8 8 H 1.48501 * 109.47116 * 83.76383 * 7 5 3 9 9 H 1.48494 * 109.47415 * 203.76790 * 7 5 3 10 10 H 1.48503 * 109.47109 * 323.76874 * 7 5 3 11 11 C 1.34777 * 120.00085 * 180.02562 * 2 1 3 12 12 O 1.21298 * 120.00004 * 184.10873 * 11 2 1 13 13 C 1.50701 * 120.00163 * 4.10048 * 11 2 1 14 14 H 1.08999 * 110.92825 * 172.40543 * 13 11 2 15 15 N 1.47322 * 110.86459 * 296.03887 * 13 11 2 16 16 C 1.37694 * 114.53259 * 118.16785 * 15 13 11 17 17 Cl 1.73599 * 119.39268 * 179.97438 * 16 15 13 18 18 C 1.31698 * 121.20494 * 0.02562 * 16 15 13 19 19 S 1.77684 * 106.22891 * 359.97241 * 18 16 15 20 20 H 1.08999 * 109.47214 * 215.44396 * 1 2 3 21 21 H 1.08998 * 109.47388 * 335.43682 * 1 2 3 22 22 H 1.09000 * 109.47285 * 95.43910 * 1 2 3 23 23 H 0.97004 * 119.99282 * 179.97438 * 6 5 3 24 24 H 0.96992 * 122.73116 * 298.18450 * 15 13 11 25 25 H 1.07998 * 126.88368 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0693 1.2803 0.5598 5 6 1.6629 2.2710 -0.7202 6 7 2.1727 3.4676 -0.5324 7 14 0.2831 2.0269 -1.9554 8 1 -1.0235 2.0563 -1.2502 9 1 0.3249 3.1145 -2.9657 10 1 0.4507 0.7158 -2.6323 11 6 2.1388 -1.1672 -0.0005 12 8 3.3495 -1.1686 0.0747 13 6 1.3883 -2.4706 -0.0944 14 1 2.0756 -3.3077 -0.2170 15 7 0.5277 -2.6667 1.0851 16 6 -0.8180 -2.7458 0.8042 17 17 -1.9472 -2.9771 2.1023 18 6 -1.2639 -2.6503 -0.4313 19 16 0.1674 -2.4239 -1.4597 20 1 -0.3633 -0.8372 0.5959 21 1 -0.3634 0.9346 0.4272 22 1 -0.3634 -0.0974 -1.0230 23 1 1.8326 4.2240 -1.0355 24 1 0.8803 -2.7342 1.9861 25 1 -2.2931 -2.6997 -0.7546 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725578078.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:11 Heat of formation + Delta-G solvation = 25.756595 kcal Electronic energy + Delta-G solvation = -14498.460015 eV Core-core repulsion = 11859.406296 eV Total energy + Delta-G solvation = -2639.053719 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.58684 -37.71820 -36.25307 -34.93588 -32.07516 -30.74886 -27.53611 -26.43260 -24.47465 -20.93622 -19.73101 -18.62855 -17.19140 -16.55831 -15.80674 -15.53720 -14.83619 -14.31578 -14.20241 -13.62787 -13.42300 -12.85449 -12.50296 -12.29477 -11.95698 -11.79422 -11.46755 -10.85660 -10.65020 -10.37272 -10.25391 -9.91193 -9.29914 -9.14584 -8.78220 -7.82459 -6.86353 -6.44327 -4.07793 1.14408 1.60254 1.83637 2.53812 3.02406 3.13833 3.25719 3.31623 3.89399 4.12547 4.21815 4.92922 5.09073 5.16523 5.46208 5.68863 5.89143 6.15887 6.40386 6.54524 7.22596 7.44791 8.14532 8.36737 8.80558 9.20931 9.57640 10.66334 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.027720 B = 0.009643 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.847945 B = 2903.035428 C = 3098.023261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.435 5.435 3 C -0.316 4.316 4 H 0.109 0.891 5 C 0.062 3.938 6 N -0.864 5.864 7 Si 0.882 3.118 8 H -0.273 1.273 9 H -0.290 1.290 10 H -0.253 1.253 11 C 0.446 3.554 12 O -0.556 6.556 13 C 0.171 3.829 14 H 0.130 0.870 15 N -0.723 5.723 16 C 0.190 3.810 17 Cl -0.043 7.043 18 C -0.243 4.243 19 S -0.117 6.117 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.276 0.724 24 H 0.422 0.578 25 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 -11.929 1.796 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.155 5.155 3 C -0.444 4.444 4 H 0.127 0.873 5 C -0.145 4.145 6 N -0.500 5.500 7 Si 0.709 3.291 8 H -0.198 1.198 9 H -0.216 1.216 10 H -0.177 1.177 11 C 0.229 3.771 12 O -0.438 6.438 13 C -0.048 4.048 14 H 0.147 0.853 15 N -0.362 5.362 16 C 0.051 3.949 17 Cl -0.015 7.015 18 C -0.386 4.386 19 S 0.119 5.881 20 H 0.084 0.916 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.262 0.738 25 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.469 -11.574 0.560 14.964 hybrid contribution -1.013 -0.100 1.137 1.526 sum -10.482 -11.674 1.697 15.780 Atomic orbital electron populations 1.22792 0.82964 1.02977 1.02216 1.43528 1.04362 1.05297 1.62275 1.19191 1.09599 0.85388 1.30199 0.87301 1.25386 0.97888 0.94786 0.96446 1.69678 1.41868 0.99003 1.39448 0.86967 0.81551 0.78854 0.81729 1.19831 1.21648 1.17680 1.19956 0.87697 0.84264 0.85141 1.90611 1.13163 1.86040 1.54017 1.24530 0.93264 1.01605 0.85381 0.85294 1.44928 1.01147 1.80279 1.09818 1.20232 0.82903 1.02464 0.89315 1.98414 1.57598 1.95468 1.50012 1.24190 1.02305 1.20373 0.91702 1.86738 0.97922 1.91583 1.11890 0.91598 0.91019 0.91674 0.91321 0.73786 0.79504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 6.17 59.84 0.37 1.08 15 2 N -0.44 -10.61 2.65 -122.20 -0.32 -10.94 15 3 C -0.32 -8.98 9.44 -14.93 -0.14 -9.12 15 4 H 0.11 3.46 7.86 -52.49 -0.41 3.05 15 5 C 0.06 1.72 5.34 -17.47 -0.09 1.62 15 6 N -0.86 -25.02 13.96 55.50 0.77 -24.24 15 7 Si 0.88 20.77 24.09 -169.99 -4.10 16.67 15 8 H -0.27 -5.97 6.71 56.52 0.38 -5.60 15 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 10 H -0.25 -5.89 6.76 56.52 0.38 -5.51 15 11 C 0.45 10.32 6.99 -10.99 -0.08 10.24 15 12 O -0.56 -14.96 16.94 5.54 0.09 -14.87 15 13 C 0.17 2.98 4.34 -4.74 -0.02 2.96 15 14 H 0.13 2.03 8.14 -51.93 -0.42 1.61 15 15 N -0.72 -10.50 5.05 -55.24 -0.28 -10.78 15 16 C 0.19 2.55 5.09 -16.79 -0.09 2.47 15 17 Cl -0.04 -0.48 29.07 -51.86 -1.51 -1.99 15 18 C -0.24 -3.31 10.10 28.86 0.29 -3.02 15 19 S -0.12 -1.96 19.87 -107.50 -2.14 -4.09 15 20 H 0.07 1.19 2.98 -51.93 -0.15 1.03 15 21 H 0.07 1.54 6.61 -51.93 -0.34 1.19 15 22 H 0.07 1.35 3.89 -51.93 -0.20 1.14 15 23 H 0.28 7.41 8.31 -40.82 -0.34 7.07 15 24 H 0.42 5.45 8.96 -40.82 -0.37 5.08 15 25 H 0.19 2.04 8.06 -52.49 -0.42 1.62 15 LS Contribution 234.48 15.07 3.53 3.53 Total: -1.00 -30.99 234.48 -5.20 -36.18 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -1.50 Total: 4.28 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 0.24 Total: 6.23 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.17 Total: -45.95 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.09 Total: -14.87 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.10 Total: 16.67 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.14 Total: -4.09 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.99 -5.20 -36.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725578078.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.938 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds