Wall clock time and date at job start Mon Mar 30 2020 03:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37098 * 120.00049 * 2 1 4 4 H 1.08000 * 120.00098 * 143.23373 * 3 2 1 5 5 C 1.38952 * 119.99814 * 323.23701 * 3 2 1 6 6 N 1.31414 * 119.99510 * 167.60482 * 5 3 2 7 7 Si 1.86795 * 120.00245 * 347.60049 * 5 3 2 8 8 H 1.48501 * 109.47116 * 83.76383 * 7 5 3 9 9 H 1.48494 * 109.47415 * 203.76790 * 7 5 3 10 10 H 1.48503 * 109.47109 * 323.76874 * 7 5 3 11 11 C 1.34777 * 120.00085 * 180.02562 * 2 1 3 12 12 O 1.21298 * 120.00004 * 184.10873 * 11 2 1 13 13 C 1.50701 * 120.00163 * 4.10048 * 11 2 1 14 14 H 1.08999 * 110.92825 * 172.40543 * 13 11 2 15 15 N 1.47322 * 110.86459 * 296.03887 * 13 11 2 16 16 C 1.37694 * 114.53259 * 118.16785 * 15 13 11 17 17 Cl 1.73599 * 119.39268 * 179.97438 * 16 15 13 18 18 C 1.31698 * 121.20494 * 0.02562 * 16 15 13 19 19 S 1.77684 * 106.22891 * 359.97241 * 18 16 15 20 20 H 1.08999 * 109.47214 * 215.44396 * 1 2 3 21 21 H 1.08998 * 109.47388 * 335.43682 * 1 2 3 22 22 H 1.09000 * 109.47285 * 95.43910 * 1 2 3 23 23 H 0.97004 * 119.99282 * 179.97438 * 6 5 3 24 24 H 0.96992 * 122.73116 * 298.18450 * 15 13 11 25 25 H 1.07998 * 126.88368 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0693 1.2803 0.5598 5 6 1.6629 2.2710 -0.7202 6 7 2.1727 3.4676 -0.5324 7 14 0.2831 2.0269 -1.9554 8 1 -1.0235 2.0563 -1.2502 9 1 0.3249 3.1145 -2.9657 10 1 0.4507 0.7158 -2.6323 11 6 2.1388 -1.1672 -0.0005 12 8 3.3495 -1.1686 0.0747 13 6 1.3883 -2.4706 -0.0944 14 1 2.0756 -3.3077 -0.2170 15 7 0.5277 -2.6667 1.0851 16 6 -0.8180 -2.7458 0.8042 17 17 -1.9472 -2.9771 2.1023 18 6 -1.2639 -2.6503 -0.4313 19 16 0.1674 -2.4239 -1.4597 20 1 -0.3633 -0.8372 0.5959 21 1 -0.3634 0.9346 0.4272 22 1 -0.3634 -0.0974 -1.0230 23 1 1.8326 4.2240 -1.0355 24 1 0.8803 -2.7342 1.9861 25 1 -2.2931 -2.6997 -0.7546 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725578078.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:11 Heat of formation + Delta-G solvation = 2.036945 kcal Electronic energy + Delta-G solvation = -14499.488576 eV Core-core repulsion = 11859.406296 eV Total energy + Delta-G solvation = -2640.082281 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21041 -39.10374 -37.37722 -36.88750 -34.15385 -31.99334 -29.09578 -28.15920 -26.36659 -22.22594 -21.26417 -20.04371 -19.22278 -18.00793 -17.50464 -17.22582 -16.51968 -15.98684 -15.35483 -15.07088 -14.97678 -14.46831 -14.31977 -14.05314 -13.58235 -13.32478 -12.59493 -12.53202 -12.39700 -11.88880 -11.73334 -11.60001 -11.21313 -10.69315 -10.38952 -9.80391 -8.55877 -8.14777 -6.27088 -0.06830 0.33903 0.75410 1.20097 1.26352 1.39792 1.47007 1.72327 2.17138 2.37465 2.46340 2.92141 3.46675 3.96699 4.01556 4.25952 4.49215 4.70807 4.75336 5.36538 5.42476 5.92675 6.13869 6.39144 6.76368 7.14276 7.61292 8.59805 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.027720 B = 0.009643 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.847945 B = 2903.035428 C = 3098.023261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.448 5.448 3 C -0.338 4.338 4 H 0.052 0.948 5 C 0.017 3.983 6 N -0.910 5.910 7 Si 0.944 3.056 8 H -0.238 1.238 9 H -0.288 1.288 10 H -0.247 1.247 11 C 0.445 3.555 12 O -0.603 6.603 13 C 0.182 3.818 14 H 0.149 0.851 15 N -0.720 5.720 16 C 0.180 3.820 17 Cl -0.014 7.014 18 C -0.230 4.230 19 S -0.135 6.135 20 H 0.094 0.906 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.283 0.717 24 H 0.430 0.570 25 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -13.671 1.307 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.168 5.168 3 C -0.466 4.466 4 H 0.070 0.930 5 C -0.186 4.186 6 N -0.547 5.547 7 Si 0.766 3.234 8 H -0.161 1.161 9 H -0.214 1.214 10 H -0.171 1.171 11 C 0.230 3.770 12 O -0.488 6.488 13 C -0.038 4.038 14 H 0.166 0.834 15 N -0.360 5.360 16 C 0.042 3.958 17 Cl 0.014 6.986 18 C -0.371 4.371 19 S 0.100 5.900 20 H 0.112 0.888 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.271 0.729 25 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.729 -13.328 0.107 18.431 hybrid contribution 0.021 0.356 1.382 1.427 sum -12.709 -12.973 1.490 18.221 Atomic orbital electron populations 1.22927 0.80489 1.03975 1.03228 1.43572 1.05795 1.04408 1.63042 1.18801 1.08887 0.87888 1.31008 0.92999 1.26173 1.00760 0.93886 0.97784 1.69791 1.44050 1.00064 1.40827 0.86014 0.79580 0.78847 0.79002 1.16137 1.21447 1.17137 1.20997 0.87574 0.85935 0.82486 1.90578 1.15735 1.87321 1.55119 1.24104 0.94195 0.98247 0.87216 0.83413 1.44828 1.01472 1.80321 1.09361 1.20315 0.82665 1.02384 0.90416 1.98434 1.56208 1.95304 1.48663 1.24599 1.02393 1.19564 0.90552 1.86878 0.99438 1.91725 1.11923 0.88806 0.91598 0.90755 0.90775 0.72893 0.76293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 6.17 127.77 0.79 2.22 15 2 N -0.45 -21.91 2.65 -658.90 -1.75 -23.66 15 3 C -0.34 -19.97 9.44 84.04 0.79 -19.18 15 4 H 0.05 3.57 7.86 -2.91 -0.02 3.55 15 5 C 0.02 0.96 5.34 84.93 0.45 1.41 15 6 N -0.91 -54.38 13.96 21.66 0.30 -54.07 15 7 Si 0.94 41.89 24.09 68.60 1.65 43.54 15 8 H -0.24 -9.22 6.71 99.48 0.67 -8.55 15 9 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 10 H -0.25 -10.71 6.76 99.48 0.67 -10.03 15 11 C 0.45 20.68 6.99 87.66 0.61 21.29 15 12 O -0.60 -33.53 16.94 -3.08 -0.05 -33.58 15 13 C 0.18 6.00 4.34 85.48 0.37 6.37 15 14 H 0.15 4.37 8.14 -2.39 -0.02 4.35 15 15 N -0.72 -18.92 5.05 -328.68 -1.66 -20.58 15 16 C 0.18 4.13 5.09 83.09 0.42 4.55 15 17 Cl -0.01 -0.26 29.07 -2.72 -0.08 -0.34 15 18 C -0.23 -5.19 10.10 67.13 0.68 -4.51 15 19 S -0.14 -4.09 19.87 -56.49 -1.12 -5.21 15 20 H 0.09 3.09 2.98 -2.39 -0.01 3.08 15 21 H 0.07 2.66 6.61 -2.39 -0.02 2.65 15 22 H 0.07 2.80 3.89 -2.39 -0.01 2.79 15 23 H 0.28 15.46 8.31 -92.71 -0.77 14.69 15 24 H 0.43 10.06 8.96 -92.71 -0.83 9.23 15 25 H 0.22 3.50 8.06 -2.91 -0.02 3.47 15 Total: -1.00 -70.22 234.48 1.76 -68.46 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.35 Total: 13.29 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 4.12 Total: 12.15 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -3.11 Total: -98.31 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.05 Total: -33.58 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.65 Total: 43.54 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -1.12 Total: -5.21 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -70.22 1.76 -68.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725578078.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.496 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds