Wall clock time and date at job start Mon Mar 30 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37128 * 119.99546 * 2 1 4 4 H 1.07996 * 119.99900 * 201.42610 * 3 2 1 5 5 C 1.38203 * 120.00175 * 21.43476 * 3 2 1 6 6 N 1.31945 * 119.99978 * 15.15267 * 5 3 2 7 7 Si 1.86802 * 119.99899 * 195.16189 * 5 3 2 8 8 H 1.48502 * 109.47134 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47282 * 119.99745 * 7 5 3 10 10 H 1.48502 * 109.46748 * 239.99485 * 7 5 3 11 11 C 1.37602 * 120.00383 * 179.97438 * 2 1 3 12 12 O 1.35717 * 119.99703 * 33.38307 * 11 2 1 13 13 C 1.35365 * 119.99992 * 213.38353 * 11 2 1 14 14 C 1.51512 * 123.41754 * 185.70476 * 13 11 2 15 15 S 1.82543 * 102.50334 * 180.02562 * 14 13 11 16 16 C 1.77286 * 94.12429 * 359.97438 * 15 14 13 17 17 Cl 1.73603 * 125.97781 * 179.97438 * 16 15 14 18 18 N 1.29348 * 108.05259 * 359.97438 * 16 15 14 19 19 H 1.09000 * 109.47263 * 271.14138 * 1 2 3 20 20 H 1.09000 * 109.46938 * 31.14346 * 1 2 3 21 21 H 1.09002 * 109.46479 * 151.14182 * 1 2 3 22 22 H 0.96998 * 120.00063 * 180.02562 * 6 5 3 23 23 H 0.96697 * 114.00256 * 5.29327 * 12 11 2 24 24 H 1.09003 * 110.79913 * 298.28936 * 14 13 11 25 25 H 1.09002 * 110.80234 * 61.77854 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1876 0.0000 4 1 3.1746 1.2200 -0.3417 5 6 1.5312 2.3431 0.4374 6 7 0.4080 2.2695 1.1257 7 14 2.2842 4.0090 0.0538 8 1 3.5344 3.8197 -0.7250 9 1 1.3231 4.8156 -0.7405 10 1 2.5939 4.7161 1.3224 11 6 2.1531 -1.1916 0.0005 12 8 1.6425 -2.2703 -0.6457 13 6 3.3393 -1.2880 0.6456 14 6 4.2204 -2.5194 0.5926 15 16 5.6369 -2.0372 1.6381 16 6 4.9873 -0.4274 1.9984 17 17 5.7434 0.7785 2.9923 18 7 3.8513 -0.3085 1.3913 19 1 -0.3634 0.0205 1.0274 20 1 -0.3633 0.8796 -0.5315 21 1 -0.3632 -0.9001 -0.4960 22 1 -0.0270 3.0804 1.4324 23 1 0.8344 -2.0846 -1.1433 24 1 3.7047 -3.3827 1.0134 25 1 4.5438 -2.7203 -0.4287 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725584130.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:03 Heat of formation + Delta-G solvation = -3.520792 kcal Electronic energy + Delta-G solvation = -14192.544925 eV Core-core repulsion = 11552.221643 eV Total energy + Delta-G solvation = -2640.323282 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78382 -38.35843 -37.32148 -37.19196 -33.71669 -31.33495 -28.99305 -27.76819 -25.28989 -23.60228 -20.69784 -19.99502 -18.89482 -18.15702 -16.68305 -16.42721 -16.06801 -15.95455 -15.35796 -14.77780 -14.64938 -14.10385 -13.90180 -13.64779 -13.34733 -13.30628 -12.76800 -12.56686 -12.14532 -11.96390 -11.82577 -11.72784 -11.29139 -10.31538 -9.86065 -9.44461 -8.53864 -7.70822 -5.85883 0.25383 0.46239 1.34428 1.38683 1.40860 1.50780 1.70413 2.10081 2.36396 2.62514 2.97609 2.98595 4.14228 4.40172 4.51608 4.60683 4.80545 4.86510 5.13007 5.32911 5.43447 5.71807 6.30640 6.59108 7.15415 7.25595 7.49909 8.48002 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.011249 C = 0.007656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.801376 B = 2488.526898 C = 3656.609038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.430 5.430 3 C -0.260 4.260 4 H 0.086 0.914 5 C -0.001 4.001 6 N -0.880 5.880 7 Si 0.981 3.019 8 H -0.269 1.269 9 H -0.261 1.261 10 H -0.284 1.284 11 C 0.399 3.601 12 O -0.462 6.462 13 C -0.207 4.207 14 C 0.004 3.996 15 S -0.230 6.230 16 C 0.031 3.969 17 Cl -0.014 7.014 18 N -0.388 5.388 19 H 0.047 0.953 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.276 0.724 23 H 0.414 0.586 24 H 0.093 0.907 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -4.213 -3.922 5.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.125 5.125 3 C -0.389 4.389 4 H 0.104 0.896 5 C -0.205 4.205 6 N -0.516 5.516 7 Si 0.805 3.195 8 H -0.193 1.193 9 H -0.186 1.186 10 H -0.210 1.210 11 C 0.226 3.774 12 O -0.262 6.262 13 C -0.334 4.334 14 C -0.148 4.148 15 S -0.007 6.007 16 C -0.275 4.275 17 Cl 0.013 6.987 18 N -0.100 5.100 19 H 0.066 0.934 20 H 0.089 0.911 21 H 0.101 0.899 22 H 0.086 0.914 23 H 0.271 0.729 24 H 0.111 0.889 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.101 -4.116 -3.311 5.283 hybrid contribution -0.688 1.285 -0.179 1.468 sum -0.789 -2.832 -3.490 4.563 Atomic orbital electron populations 1.21687 0.77919 1.01699 1.02022 1.43479 1.06445 1.02711 1.59903 1.19695 0.98982 0.82365 1.37882 0.89580 1.25965 0.96960 1.02983 0.94545 1.70283 1.18359 1.30712 1.32220 0.85015 0.78722 0.77569 0.78179 1.19329 1.18596 1.21009 1.17559 0.90252 0.77865 0.91709 1.84995 1.46531 1.31339 1.63300 1.17575 1.02888 0.93832 1.19103 1.23017 0.92321 0.99138 1.00303 1.85748 1.33895 1.17623 1.63455 1.25685 0.96134 0.93281 1.12403 1.98271 1.78799 1.54753 1.66847 1.63752 1.10136 1.32393 1.03708 0.93396 0.91093 0.89925 0.91395 0.72851 0.88901 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.88 8.85 127.77 1.13 5.01 15 2 N -0.43 -18.36 3.07 -653.58 -2.01 -20.37 15 3 C -0.26 -12.68 7.74 83.86 0.65 -12.03 15 4 H 0.09 4.55 7.19 -2.91 -0.02 4.53 15 5 C 0.00 -0.03 5.02 84.67 0.42 0.40 15 6 N -0.88 -42.75 10.77 21.55 0.23 -42.52 15 7 Si 0.98 39.95 29.58 68.60 2.03 41.98 15 8 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 9 H -0.26 -9.84 7.11 99.48 0.71 -9.14 15 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 11 C 0.40 15.99 7.16 83.12 0.60 16.58 15 12 O -0.46 -13.69 13.07 -90.39 -1.18 -14.87 15 13 C -0.21 -9.26 6.49 41.93 0.27 -8.98 15 14 C 0.00 0.16 6.92 71.49 0.49 0.65 15 15 S -0.23 -9.40 23.41 -56.49 -1.32 -10.73 15 16 C 0.03 1.43 8.50 130.61 1.11 2.54 15 17 Cl -0.01 -0.57 29.33 -2.72 -0.08 -0.65 15 18 N -0.39 -19.26 7.83 -174.48 -1.37 -20.63 15 19 H 0.05 1.94 7.60 -2.39 -0.02 1.93 15 20 H 0.07 2.68 7.02 -2.39 -0.02 2.67 15 21 H 0.08 2.00 6.28 -2.39 -0.01 1.98 15 22 H 0.28 12.76 8.32 -92.71 -0.77 11.99 15 23 H 0.41 8.06 7.03 -74.06 -0.52 7.54 15 24 H 0.09 3.29 8.14 -2.39 -0.02 3.27 15 25 H 0.09 3.23 8.14 -2.39 -0.02 3.21 15 Total: -1.00 -58.94 248.77 1.70 -57.24 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.72 Total: 6.38 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 4.68 Total: 4.16 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.14 Total: -83.51 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.18 Total: -14.87 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.32 Total: -10.73 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -58.94 1.70 -57.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725584130.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.719 kcal (2) G-P(sol) polarization free energy of solvation -58.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds