Wall clock time and date at job start Mon Mar 30 2020 03:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.47467 * 2 1 4 4 S 1.65605 * 119.99767 * 265.00461 * 3 2 1 5 5 O 1.52204 * 109.47117 * 59.99565 * 4 3 2 6 6 O 1.42103 * 109.47087 * 299.99853 * 4 3 2 7 7 C 1.76198 * 109.47013 * 179.97438 * 4 3 2 8 8 C 1.35356 * 126.75263 * 330.17904 * 7 4 3 9 9 N 1.35312 * 106.17204 * 180.25399 * 8 7 4 10 10 H 0.97005 * 125.86333 * 179.70727 * 9 8 7 11 11 N 1.28714 * 108.26416 * 359.74264 * 9 8 7 12 12 N 1.28629 * 110.17860 * 0.02562 * 11 9 8 13 13 C 1.46506 * 125.55320 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47469 * 120.00034 * 2 1 3 15 15 N 1.27944 * 120.00077 * 234.99495 * 14 2 1 16 16 Si 1.86797 * 119.99768 * 54.99847 * 14 2 1 17 17 H 1.48498 * 109.47198 * 90.00502 * 16 14 2 18 18 H 1.48503 * 109.46655 * 210.00135 * 16 14 2 19 19 H 1.48495 * 109.47089 * 329.99851 * 16 14 2 20 20 H 1.08994 * 109.47318 * 59.99324 * 1 2 3 21 21 H 1.08999 * 109.47078 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46446 * 299.99980 * 1 2 3 23 23 H 1.09004 * 109.47168 * 240.00142 * 2 1 3 24 24 H 0.96991 * 120.00199 * 85.00147 * 3 2 1 25 25 H 0.96702 * 114.00008 * 59.99882 * 5 4 3 26 26 H 1.08001 * 126.90856 * 359.97438 * 8 7 4 27 27 H 1.09001 * 109.47060 * 90.02876 * 13 12 11 28 28 H 1.09004 * 109.47073 * 210.02365 * 13 12 11 29 29 H 1.09000 * 109.47212 * 330.02448 * 13 12 11 30 30 H 0.97000 * 120.00062 * 179.97438 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 2.4122 2.1202 -1.4288 5 8 1.1879 2.1630 -2.3321 6 8 3.4486 1.3896 -2.0700 7 6 2.9626 3.7630 -1.1081 8 6 2.5756 4.5619 -0.0863 9 7 3.2477 5.7258 -0.2425 10 1 3.1798 6.5031 0.3338 11 7 3.9921 5.6247 -1.2877 12 7 3.8472 4.4650 -1.8251 13 6 4.5346 3.9923 -3.0294 14 6 2.0324 -0.7104 1.2305 15 7 2.8449 -0.1200 2.0231 16 14 1.4689 -2.4530 1.5983 17 1 2.4009 -3.4190 0.9632 18 1 1.4569 -2.6695 3.0674 19 1 0.1011 -2.6555 1.0569 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 2.1111 1.8629 0.8368 25 1 0.4393 2.6470 -1.9573 26 1 1.8688 4.3206 0.6939 27 1 5.4707 3.5101 -2.7478 28 1 3.9003 3.2766 -3.5525 29 1 4.7442 4.8384 -3.6839 30 1 3.1680 -0.5772 2.8152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725662188.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:35 Heat of formation + Delta-G solvation = 104.247150 kcal Electronic energy + Delta-G solvation = -17257.680183 eV Core-core repulsion = 14335.791011 eV Total energy + Delta-G solvation = -2921.889172 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 249.081 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.47762 -37.58470 -37.23810 -36.28045 -34.87422 -33.65353 -32.75587 -30.34246 -29.41632 -24.84533 -24.51394 -24.21939 -20.89764 -20.01931 -19.35355 -18.53251 -17.91543 -17.86611 -17.00106 -16.63693 -15.70117 -15.36742 -14.99286 -14.95031 -14.58330 -14.30982 -14.09501 -13.62676 -13.56551 -13.12925 -12.95539 -12.32587 -12.16698 -12.11247 -11.64585 -11.56839 -10.99873 -10.93613 -10.78554 -10.60826 -9.46921 -8.59593 -5.44557 -0.52212 0.48494 0.64560 1.17396 1.36480 1.42222 1.58552 2.00002 2.09401 3.04024 3.24563 3.55018 3.59201 3.87357 3.99779 4.04756 4.07644 4.46829 4.72530 4.76933 4.89138 5.01352 5.11193 5.17057 5.41354 5.47624 5.72354 6.10960 6.22525 7.09663 7.32493 7.76318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.166 3.834 3 N -1.044 6.044 4 S 1.795 4.205 5 O -0.921 6.921 6 O -0.984 6.984 7 C -0.302 4.302 8 C 0.010 3.990 9 N -0.329 5.329 10 H 0.470 0.530 11 N -0.074 5.074 12 N -0.180 5.180 13 C 0.074 3.926 14 C -0.004 4.004 15 N -0.624 5.624 16 Si 0.909 3.091 17 H -0.244 1.244 18 H -0.251 1.251 19 H -0.230 1.230 20 H 0.066 0.934 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.078 0.922 24 H 0.376 0.624 25 H 0.405 0.595 26 H 0.223 0.777 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 9.415 3.337 10.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 N -0.791 5.791 4 S 1.853 4.147 5 O -0.771 6.771 6 O -0.971 6.971 7 C -0.488 4.488 8 C -0.141 4.141 9 N -0.060 5.060 10 H 0.321 0.679 11 N -0.049 5.049 12 N 0.020 4.980 13 C -0.066 4.066 14 C -0.255 4.255 15 N -0.237 5.237 16 Si 0.726 3.274 17 H -0.167 1.167 18 H -0.175 1.175 19 H -0.153 1.153 20 H 0.085 0.915 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.203 0.797 25 H 0.262 0.738 26 H 0.240 0.760 27 H 0.133 0.867 28 H 0.145 0.855 29 H 0.123 0.877 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.458 9.733 1.760 9.902 hybrid contribution -0.343 -0.631 1.595 1.749 sum -0.801 9.103 3.354 9.734 Atomic orbital electron populations 1.22367 0.96095 1.01577 1.02559 1.20057 0.92681 0.88894 0.93161 1.58190 1.80099 1.15035 1.25770 1.81004 0.74059 0.83562 0.76045 1.85304 1.42458 1.77752 1.71568 1.92608 1.55156 1.74079 1.75262 1.43602 0.88059 1.26206 0.90956 1.24155 1.03024 0.83507 1.03420 1.45244 1.26293 1.16349 1.18099 0.67923 1.78288 1.15521 1.10062 1.01049 1.48252 1.23978 1.05906 1.19867 1.22869 1.00209 1.02149 0.81337 1.30909 0.93455 1.04054 0.97113 1.68082 1.08968 1.40386 1.06226 0.86110 0.82901 0.77286 0.81063 1.16705 1.17480 1.15271 0.91463 0.92841 0.92319 0.90407 0.79701 0.73809 0.76039 0.86699 0.85523 0.87696 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.24 9.08 37.16 0.34 0.09 16 2 C 0.17 0.65 3.10 -69.08 -0.21 0.43 16 3 N -1.04 -2.77 5.28 -5.88 -0.03 -2.80 16 4 S 1.79 6.62 5.04 -107.50 -0.54 6.08 16 5 O -0.92 -3.59 13.41 -58.38 -0.78 -4.37 16 6 O -0.98 -10.26 16.63 -58.38 -0.97 -11.23 16 7 C -0.30 0.31 7.12 -17.74 -0.13 0.18 16 8 C 0.01 -0.05 12.03 -17.04 -0.21 -0.26 16 9 N -0.33 2.17 6.98 30.52 0.21 2.38 16 10 H 0.47 -5.09 8.96 -190.40 -1.71 -6.80 16 11 N -0.07 0.24 13.15 60.35 0.79 1.03 16 12 N -0.18 0.23 3.69 -67.54 -0.25 -0.01 16 13 C 0.07 -0.13 10.61 59.85 0.64 0.50 16 14 C 0.00 -0.01 5.36 -13.90 -0.07 -0.09 16 15 N -0.62 -2.16 12.65 56.23 0.71 -1.45 16 16 Si 0.91 1.73 28.28 -169.99 -4.81 -3.08 16 17 H -0.24 -0.80 7.11 56.52 0.40 -0.40 16 18 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 19 H -0.23 -0.36 6.23 56.52 0.35 -0.01 16 20 H 0.07 0.09 7.99 -51.93 -0.42 -0.33 16 21 H 0.05 0.06 6.12 -51.93 -0.32 -0.26 16 22 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 23 H 0.08 0.49 7.99 -51.93 -0.41 0.07 16 24 H 0.38 0.23 8.15 -34.47 -0.28 -0.05 16 25 H 0.40 -0.58 9.03 67.38 0.61 0.03 16 26 H 0.22 -2.14 8.06 -52.49 -0.42 -2.57 16 27 H 0.11 -0.23 8.14 -51.93 -0.42 -0.65 16 28 H 0.13 0.01 6.99 -51.93 -0.36 -0.35 16 29 H 0.10 -0.51 8.14 -51.93 -0.42 -0.94 16 30 H 0.33 0.58 8.23 -40.82 -0.34 0.25 16 LS Contribution 268.80 15.07 4.05 4.05 Total: 0.00 -16.03 268.80 -5.02 -21.05 By element: Atomic # 1 Polarization: -8.75 SS G_CDS: -3.76 Total: -12.51 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 0.35 Total: 0.87 kcal Atomic # 7 Polarization: -2.29 SS G_CDS: 1.44 Total: -0.85 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.75 Total: -15.61 kcal Atomic # 14 Polarization: 1.73 SS G_CDS: -4.81 Total: -3.08 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -0.54 Total: 6.08 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -16.03 -5.02 -21.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662188.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.297 kcal (2) G-P(sol) polarization free energy of solvation -16.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds