Wall clock time and date at job start Mon Mar 30 2020 03:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.47467 * 2 1 4 4 S 1.65605 * 119.99767 * 265.00461 * 3 2 1 5 5 O 1.52204 * 109.47117 * 59.99565 * 4 3 2 6 6 O 1.42103 * 109.47087 * 299.99853 * 4 3 2 7 7 C 1.76198 * 109.47013 * 179.97438 * 4 3 2 8 8 C 1.35356 * 126.75263 * 330.17904 * 7 4 3 9 9 N 1.35312 * 106.17204 * 180.25399 * 8 7 4 10 10 H 0.97005 * 125.86333 * 179.70727 * 9 8 7 11 11 N 1.28714 * 108.26416 * 359.74264 * 9 8 7 12 12 N 1.28629 * 110.17860 * 0.02562 * 11 9 8 13 13 C 1.46506 * 125.55320 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.47469 * 120.00034 * 2 1 3 15 15 N 1.27944 * 120.00077 * 234.99495 * 14 2 1 16 16 Si 1.86797 * 119.99768 * 54.99847 * 14 2 1 17 17 H 1.48498 * 109.47198 * 90.00502 * 16 14 2 18 18 H 1.48503 * 109.46655 * 210.00135 * 16 14 2 19 19 H 1.48495 * 109.47089 * 329.99851 * 16 14 2 20 20 H 1.08994 * 109.47318 * 59.99324 * 1 2 3 21 21 H 1.08999 * 109.47078 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46446 * 299.99980 * 1 2 3 23 23 H 1.09004 * 109.47168 * 240.00142 * 2 1 3 24 24 H 0.96991 * 120.00199 * 85.00147 * 3 2 1 25 25 H 0.96702 * 114.00008 * 59.99882 * 5 4 3 26 26 H 1.08001 * 126.90856 * 359.97438 * 8 7 4 27 27 H 1.09001 * 109.47060 * 90.02876 * 13 12 11 28 28 H 1.09004 * 109.47073 * 210.02365 * 13 12 11 29 29 H 1.09000 * 109.47212 * 330.02448 * 13 12 11 30 30 H 0.97000 * 120.00062 * 179.97438 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 2.4122 2.1202 -1.4288 5 8 1.1879 2.1630 -2.3321 6 8 3.4486 1.3896 -2.0700 7 6 2.9626 3.7630 -1.1081 8 6 2.5756 4.5619 -0.0863 9 7 3.2477 5.7258 -0.2425 10 1 3.1798 6.5031 0.3338 11 7 3.9921 5.6247 -1.2877 12 7 3.8472 4.4650 -1.8251 13 6 4.5346 3.9923 -3.0294 14 6 2.0324 -0.7104 1.2305 15 7 2.8449 -0.1200 2.0231 16 14 1.4689 -2.4530 1.5983 17 1 2.4009 -3.4190 0.9632 18 1 1.4569 -2.6695 3.0674 19 1 0.1011 -2.6555 1.0569 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 2.1111 1.8629 0.8368 25 1 0.4393 2.6470 -1.9573 26 1 1.8688 4.3206 0.6939 27 1 5.4707 3.5101 -2.7478 28 1 3.9003 3.2766 -3.5525 29 1 4.7442 4.8384 -3.6839 30 1 3.1680 -0.5772 2.8152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662188.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:34 Heat of formation + Delta-G solvation = 90.229744 kcal Electronic energy + Delta-G solvation = -17258.288023 eV Core-core repulsion = 14335.791011 eV Total energy + Delta-G solvation = -2922.497012 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 249.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.24881 -37.75876 -37.04826 -36.50867 -35.28796 -33.84264 -32.52821 -30.15952 -29.52839 -24.71351 -24.53067 -24.05946 -20.83222 -20.01981 -19.55084 -18.37462 -18.03839 -17.62761 -17.18191 -16.67636 -15.59048 -15.50172 -15.11487 -14.80155 -14.73889 -14.41371 -13.97133 -13.72868 -13.45265 -13.30049 -13.14618 -12.49783 -12.26260 -11.96613 -11.85449 -11.72907 -11.26054 -11.17955 -10.93415 -10.67674 -9.68417 -8.73667 -5.60424 -0.25160 0.77721 0.85525 0.96678 1.19424 1.43979 1.78400 1.80371 1.92759 3.06050 3.31221 3.54978 3.83403 3.90462 4.14330 4.23793 4.42279 4.54900 4.56578 4.67614 4.84738 4.97324 5.02459 5.26409 5.31330 5.61659 5.66436 6.09946 6.35458 7.10899 7.18543 7.73414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.156 3.844 3 N -1.040 6.040 4 S 1.813 4.187 5 O -0.938 6.938 6 O -1.061 7.061 7 C -0.354 4.354 8 C 0.051 3.949 9 N -0.306 5.306 10 H 0.490 0.510 11 N -0.080 5.080 12 N -0.189 5.189 13 C 0.070 3.930 14 C -0.014 4.014 15 N -0.637 5.637 16 Si 0.944 3.056 17 H -0.269 1.269 18 H -0.248 1.248 19 H -0.222 1.222 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.382 0.618 25 H 0.422 0.578 26 H 0.269 0.731 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.136 0.864 30 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 11.210 4.972 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 N -0.788 5.788 4 S 1.873 4.127 5 O -0.791 6.791 6 O -1.050 7.050 7 C -0.544 4.544 8 C -0.099 4.099 9 N -0.040 5.040 10 H 0.346 0.654 11 N -0.055 5.055 12 N 0.012 4.988 13 C -0.069 4.069 14 C -0.264 4.264 15 N -0.250 5.250 16 Si 0.762 3.238 17 H -0.194 1.194 18 H -0.171 1.171 19 H -0.144 1.144 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.096 0.904 23 H 0.060 0.940 24 H 0.211 0.789 25 H 0.283 0.717 26 H 0.284 0.716 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.154 0.846 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.528 11.582 3.420 12.172 hybrid contribution 0.119 -0.956 1.144 1.496 sum -1.409 10.626 4.565 11.650 Atomic orbital electron populations 1.22317 0.94216 1.02041 1.03473 1.20083 0.94263 0.89556 0.91985 1.58414 1.79772 1.14308 1.26317 1.82646 0.72911 0.81884 0.75239 1.85283 1.43373 1.78256 1.72167 1.92480 1.58891 1.76064 1.77532 1.42482 0.90910 1.26842 0.94188 1.24625 1.00995 0.82314 1.01970 1.45303 1.24713 1.16895 1.17133 0.65371 1.78261 1.16642 1.08307 1.02311 1.47650 1.24736 1.06469 1.19914 1.22859 0.99274 1.03014 0.81774 1.31117 0.93397 1.04965 0.96881 1.68061 1.09014 1.41196 1.06738 0.85615 0.82426 0.75120 0.80677 1.19446 1.17117 1.14353 0.91444 0.92613 0.90426 0.93972 0.78931 0.71705 0.71559 0.87310 0.87953 0.84569 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 9.08 71.98 0.65 0.18 16 2 C 0.16 1.42 3.10 44.24 0.14 1.56 16 3 N -1.04 -6.38 5.28 -172.51 -0.91 -7.30 16 4 S 1.81 16.65 5.04 -56.49 -0.28 16.36 16 5 O -0.94 -8.80 13.41 -126.85 -1.70 -10.50 16 6 O -1.06 -26.19 16.63 -126.85 -2.11 -28.30 16 7 C -0.35 0.68 7.12 83.73 0.60 1.28 16 8 C 0.05 -0.68 12.03 83.49 1.00 0.32 16 9 N -0.31 4.76 6.98 -57.35 -0.40 4.36 16 10 H 0.49 -12.14 8.96 -219.95 -1.97 -14.11 16 11 N -0.08 0.59 13.15 37.02 0.49 1.08 16 12 N -0.19 0.41 3.69 -367.60 -1.36 -0.94 16 13 C 0.07 -0.12 10.61 127.77 1.36 1.24 16 14 C -0.01 -0.10 5.36 88.68 0.48 0.38 16 15 N -0.64 -4.65 12.65 24.11 0.30 -4.34 16 16 Si 0.94 3.85 28.28 68.60 1.94 5.79 16 17 H -0.27 -2.18 7.11 99.48 0.71 -1.48 16 18 H -0.25 -0.84 7.11 99.48 0.71 -0.13 16 19 H -0.22 -0.56 6.23 99.48 0.62 0.06 16 20 H 0.07 0.20 7.99 -2.39 -0.02 0.18 16 21 H 0.05 0.12 6.12 -2.39 -0.01 0.11 16 22 H 0.08 -0.08 8.14 -2.38 -0.02 -0.10 16 23 H 0.04 0.67 7.99 -2.38 -0.02 0.65 16 24 H 0.38 0.37 8.15 -96.75 -0.79 -0.42 16 25 H 0.42 -1.00 9.03 -87.93 -0.79 -1.80 16 26 H 0.27 -6.22 8.06 -2.91 -0.02 -6.24 16 27 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.10 0.38 6.99 -2.38 -0.02 0.36 16 29 H 0.14 -1.24 8.14 -2.39 -0.02 -1.26 16 30 H 0.33 1.26 8.23 -92.71 -0.76 0.49 16 Total: 0.00 -40.43 268.80 -2.24 -42.68 By element: Atomic # 1 Polarization: -21.40 SS G_CDS: -2.44 Total: -23.83 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 4.22 Total: 4.95 kcal Atomic # 7 Polarization: -5.27 SS G_CDS: -1.87 Total: -7.14 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -3.81 Total: -38.80 kcal Atomic # 14 Polarization: 3.85 SS G_CDS: 1.94 Total: 5.79 kcal Atomic # 16 Polarization: 16.65 SS G_CDS: -0.28 Total: 16.36 kcal Total: -40.43 -2.24 -42.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662188.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.906 kcal (2) G-P(sol) polarization free energy of solvation -40.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds