Wall clock time and date at job start Mon Mar 30 2020 04:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.33768 * 125.55701 * 2 1 4 4 C 1.35356 * 106.49507 * 180.15585 * 3 2 1 5 5 S 1.76203 * 126.91139 * 179.90924 * 4 3 2 6 6 O 1.52198 * 109.47163 * 29.70685 * 5 4 3 7 7 O 1.42099 * 109.47125 * 149.71069 * 5 4 3 8 8 N 1.65602 * 109.46765 * 269.71149 * 5 4 3 9 9 C 1.46498 * 119.99612 * 180.27868 * 8 5 4 10 10 C 1.50703 * 109.47212 * 164.72359 * 9 8 5 11 11 H 1.08006 * 119.99810 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00213 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99837 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00085 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46972 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47206 * 119.99793 * 14 12 10 17 17 H 1.48503 * 109.46963 * 240.00304 * 14 12 10 18 18 N 1.35317 * 106.17327 * 359.64523 * 4 3 2 19 19 H 0.96994 * 125.86240 * 180.20277 * 18 4 3 20 20 N 1.28630 * 125.55481 * 179.75511 * 2 1 3 21 21 H 1.09003 * 109.46835 * 270.26687 * 1 2 3 22 22 H 1.08991 * 109.46725 * 30.26636 * 1 2 3 23 23 H 1.09001 * 109.46700 * 150.26542 * 1 2 3 24 24 H 1.08001 * 126.75170 * 0.02983 * 3 2 1 25 25 H 0.96693 * 114.00358 * 300.00347 * 6 5 4 26 26 H 0.97001 * 119.99942 * 359.97438 * 8 5 4 27 27 H 1.08996 * 109.46882 * 284.72133 * 9 8 5 28 28 H 1.08999 * 109.47498 * 44.72066 * 9 8 5 29 29 H 0.97002 * 119.99929 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2430 1.0883 0.0000 4 6 3.5223 0.6462 -0.0035 5 16 4.9826 1.6322 -0.0074 6 8 4.7076 2.9490 0.7045 7 8 6.0244 0.9384 0.6654 8 7 5.4402 1.9347 -1.5700 9 6 6.6373 2.7344 -1.8409 10 6 7.0466 2.5546 -3.2800 11 1 6.4726 1.9087 -3.9280 12 6 8.1538 3.2144 -3.7696 13 7 8.8530 4.0005 -2.9804 14 14 8.6615 2.9909 -5.5533 15 1 7.7178 2.0607 -6.2237 16 1 8.6359 4.3053 -6.2437 17 1 10.0346 2.4284 -5.6103 18 7 3.4541 -0.7052 0.0025 19 1 4.2106 -1.3123 0.0047 20 7 2.2131 -1.0465 0.0045 21 1 -0.3633 0.0048 1.0277 22 1 -0.3632 0.8875 -0.5179 23 1 -0.3633 -0.8924 -0.5097 24 1 1.9148 2.1172 0.0005 25 1 4.0061 3.4765 0.2988 26 1 4.9180 1.5786 -2.3058 27 1 6.4217 3.7862 -1.6532 28 1 7.4477 2.4078 -1.1891 29 1 9.6318 4.4650 -3.3248 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725662204.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:18 Heat of formation + Delta-G solvation = 78.793772 kcal Electronic energy + Delta-G solvation = -16181.756094 eV Core-core repulsion = 13272.418920 eV Total energy + Delta-G solvation = -2909.337174 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.87397 -35.99697 -35.59847 -33.97057 -33.52147 -31.26998 -31.19747 -29.29099 -25.83756 -23.54351 -22.86286 -21.63944 -19.21481 -18.73148 -17.21965 -16.84956 -16.66851 -15.68817 -15.13749 -14.48905 -14.40141 -14.02488 -13.89313 -13.62096 -12.81505 -12.53388 -12.24764 -11.78004 -11.39648 -11.08599 -11.02890 -10.75321 -10.60022 -10.16184 -9.77573 -9.51132 -9.39217 -8.84257 -8.34562 -6.94736 -5.81809 -4.31342 -3.81902 0.81304 1.71200 1.90686 3.07212 3.41056 3.47253 3.51361 4.03380 4.38170 4.42246 4.60563 4.69186 4.74914 4.91558 5.11259 5.25859 5.53587 6.07760 6.17871 6.85126 7.42488 7.63272 7.73496 7.96906 8.07623 8.36754 8.73879 9.04814 9.42334 9.82751 11.30487 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.035762 B = 0.005670 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.766199 B = 4937.293002 C = 5280.870362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.216 5.216 3 C -0.023 4.023 4 C -0.380 4.380 5 S 1.935 4.065 6 O -0.893 6.893 7 O -0.973 6.973 8 N -1.098 6.098 9 C 0.237 3.763 10 C -0.515 4.515 11 H 0.056 0.944 12 C 0.051 3.949 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.286 1.286 18 N -0.324 5.324 19 H 0.466 0.534 20 N -0.112 5.112 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.105 0.895 24 H 0.203 0.797 25 H 0.414 0.586 26 H 0.366 0.634 27 H -0.002 1.002 28 H 0.007 0.993 29 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.252 -7.669 5.524 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.013 5.013 3 C -0.184 4.184 4 C -0.579 4.579 5 S 2.017 3.983 6 O -0.740 6.740 7 O -0.959 6.959 8 N -0.845 5.845 9 C 0.109 3.891 10 C -0.554 4.554 11 H 0.074 0.926 12 C -0.149 4.149 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.212 1.212 18 N -0.065 5.065 19 H 0.316 0.684 20 N -0.087 5.087 21 H 0.121 0.879 22 H 0.131 0.869 23 H 0.123 0.877 24 H 0.220 0.780 25 H 0.271 0.729 26 H 0.192 0.808 27 H 0.016 0.984 28 H 0.025 0.975 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.525 -8.559 6.731 25.922 hybrid contribution 0.843 0.206 -2.185 2.351 sum -22.682 -8.353 4.547 24.595 Atomic orbital electron populations 1.22564 0.71290 1.06850 1.05999 1.46857 1.09371 1.05089 1.40009 1.22950 0.88506 0.94624 1.12367 1.40660 1.23568 0.88238 1.05414 1.65367 0.85481 0.72127 0.75308 1.85330 1.61303 1.55564 1.71774 1.92785 1.59560 1.68666 1.74878 1.57663 1.35653 1.65004 1.26191 1.18778 0.84752 0.90105 0.95461 1.21623 1.10896 1.26397 0.96528 0.92610 1.25073 0.96661 0.95635 0.97555 1.69995 1.18320 1.30219 1.35165 0.86551 0.78349 0.77624 0.85466 1.19971 1.21161 1.21184 1.44491 1.04028 1.08851 1.49083 0.68409 1.77989 0.92973 1.09467 1.28305 0.87943 0.86910 0.87658 0.77974 0.72877 0.80806 0.98423 0.97540 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.08 11.35 59.85 0.68 0.76 15 2 N -0.22 -1.48 3.69 -68.45 -0.25 -1.73 15 3 C -0.02 -0.19 11.47 -17.74 -0.20 -0.40 15 4 C -0.38 -5.02 7.52 -17.04 -0.13 -5.15 15 5 S 1.94 39.20 5.55 -107.50 -0.60 38.61 15 6 O -0.89 -17.16 13.56 -58.38 -0.79 -17.96 15 7 O -0.97 -26.52 18.14 -58.38 -1.06 -27.58 15 8 N -1.10 -25.67 6.07 -11.66 -0.07 -25.74 15 9 C 0.24 7.17 6.07 -5.19 -0.03 7.14 15 10 C -0.51 -16.01 9.27 -34.44 -0.32 -16.33 15 11 H 0.06 1.65 7.65 -52.48 -0.40 1.25 15 12 C 0.05 1.60 5.46 -17.82 -0.10 1.51 15 13 N -0.90 -29.40 13.29 55.43 0.74 -28.66 15 14 Si 0.89 23.06 29.54 -169.99 -5.02 18.04 15 15 H -0.27 -6.88 7.11 56.52 0.40 -6.48 15 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 18 N -0.32 -3.84 6.98 31.17 0.22 -3.62 15 19 H 0.47 5.10 8.96 -190.41 -1.71 3.40 15 20 N -0.11 -1.07 13.15 60.35 0.79 -0.28 15 21 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 15 22 H 0.11 -0.15 8.14 -51.93 -0.42 -0.57 15 23 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 15 24 H 0.20 0.80 8.06 -52.49 -0.42 0.38 15 25 H 0.41 5.12 9.03 67.38 0.61 5.73 15 26 H 0.37 7.65 8.54 -34.47 -0.29 7.36 15 27 H 0.00 -0.06 8.14 -51.93 -0.42 -0.49 15 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 29 H 0.26 7.89 8.31 -40.82 -0.34 7.55 15 LS Contribution 273.67 15.07 4.12 4.12 Total: -1.00 -48.43 273.67 -5.48 -53.91 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.47 Total: 3.35 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.10 Total: -12.46 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 1.42 Total: -60.04 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.85 Total: -45.53 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Atomic # 16 Polarization: 39.20 SS G_CDS: -0.60 Total: 38.61 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -48.43 -5.48 -53.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662204.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.707 kcal (2) G-P(sol) polarization free energy of solvation -48.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds