Wall clock time and date at job start Mon Mar 30 2020 04:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.33768 * 125.55701 * 2 1 4 4 C 1.35356 * 106.49507 * 180.15585 * 3 2 1 5 5 S 1.76203 * 126.91139 * 179.90924 * 4 3 2 6 6 O 1.52198 * 109.47163 * 29.70685 * 5 4 3 7 7 O 1.42099 * 109.47125 * 149.71069 * 5 4 3 8 8 N 1.65602 * 109.46765 * 269.71149 * 5 4 3 9 9 C 1.46498 * 119.99612 * 180.27868 * 8 5 4 10 10 C 1.50703 * 109.47212 * 164.72359 * 9 8 5 11 11 H 1.08006 * 119.99810 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00213 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99837 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00085 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46972 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47206 * 119.99793 * 14 12 10 17 17 H 1.48503 * 109.46963 * 240.00304 * 14 12 10 18 18 N 1.35317 * 106.17327 * 359.64523 * 4 3 2 19 19 H 0.96994 * 125.86240 * 180.20277 * 18 4 3 20 20 N 1.28630 * 125.55481 * 179.75511 * 2 1 3 21 21 H 1.09003 * 109.46835 * 270.26687 * 1 2 3 22 22 H 1.08991 * 109.46725 * 30.26636 * 1 2 3 23 23 H 1.09001 * 109.46700 * 150.26542 * 1 2 3 24 24 H 1.08001 * 126.75170 * 0.02983 * 3 2 1 25 25 H 0.96693 * 114.00358 * 300.00347 * 6 5 4 26 26 H 0.97001 * 119.99942 * 359.97438 * 8 5 4 27 27 H 1.08996 * 109.46882 * 284.72133 * 9 8 5 28 28 H 1.08999 * 109.47498 * 44.72066 * 9 8 5 29 29 H 0.97002 * 119.99929 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2430 1.0883 0.0000 4 6 3.5223 0.6462 -0.0035 5 16 4.9826 1.6322 -0.0074 6 8 4.7076 2.9490 0.7045 7 8 6.0244 0.9384 0.6654 8 7 5.4402 1.9347 -1.5700 9 6 6.6373 2.7344 -1.8409 10 6 7.0466 2.5546 -3.2800 11 1 6.4726 1.9087 -3.9280 12 6 8.1538 3.2144 -3.7696 13 7 8.8530 4.0005 -2.9804 14 14 8.6615 2.9909 -5.5533 15 1 7.7178 2.0607 -6.2237 16 1 8.6359 4.3053 -6.2437 17 1 10.0346 2.4284 -5.6103 18 7 3.4541 -0.7052 0.0025 19 1 4.2106 -1.3123 0.0047 20 7 2.2131 -1.0465 0.0045 21 1 -0.3633 0.0048 1.0277 22 1 -0.3632 0.8875 -0.5179 23 1 -0.3633 -0.8924 -0.5097 24 1 1.9148 2.1172 0.0005 25 1 4.0061 3.4765 0.2988 26 1 4.9180 1.5786 -2.3058 27 1 6.4217 3.7862 -1.6532 28 1 7.4477 2.4078 -1.1891 29 1 9.6318 4.4650 -3.3248 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662204.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:18 Heat of formation + Delta-G solvation = 31.362071 kcal Electronic energy + Delta-G solvation = -16183.812887 eV Core-core repulsion = 13272.418920 eV Total energy + Delta-G solvation = -2911.393967 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.04381 -36.99226 -36.60502 -35.66778 -35.45895 -33.29185 -32.35089 -29.85510 -28.00457 -24.59754 -23.77650 -23.72340 -20.25411 -19.88665 -18.84211 -18.13497 -17.61668 -17.10506 -16.70412 -16.31308 -15.65451 -14.94801 -14.70430 -14.45722 -14.30003 -14.00585 -13.88426 -13.32066 -13.21424 -12.83504 -12.72199 -12.18281 -12.02206 -11.78315 -11.52981 -11.12610 -10.84085 -10.65605 -10.52416 -8.72357 -8.13044 -6.25895 -5.68515 -0.12588 0.92995 0.98318 1.39058 1.43669 1.56457 1.93496 2.44850 3.10256 3.18398 3.44698 3.63299 3.95614 4.31916 4.39877 4.44287 4.75052 4.80883 5.29017 5.32373 5.61567 5.62076 5.69747 6.08286 6.40351 6.50207 6.85333 7.11373 7.41749 7.74429 9.00548 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.035762 B = 0.005670 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.766199 B = 4937.293002 C = 5280.870362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.205 5.205 3 C 0.014 3.986 4 C -0.360 4.360 5 S 1.854 4.146 6 O -0.928 6.928 7 O -1.069 7.069 8 N -1.067 6.067 9 C 0.252 3.748 10 C -0.537 4.537 11 H 0.070 0.930 12 C -0.016 4.016 13 N -0.944 5.944 14 Si 0.981 3.019 15 H -0.255 1.255 16 H -0.272 1.272 17 H -0.283 1.283 18 N -0.306 5.306 19 H 0.471 0.529 20 N -0.081 5.081 21 H 0.128 0.872 22 H 0.151 0.849 23 H 0.120 0.880 24 H 0.261 0.739 25 H 0.427 0.573 26 H 0.370 0.630 27 H -0.032 1.032 28 H -0.061 1.061 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.192 -9.355 3.813 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.006 5.006 3 C -0.139 4.139 4 C -0.556 4.556 5 S 1.923 4.077 6 O -0.780 6.780 7 O -1.057 7.057 8 N -0.813 5.813 9 C 0.121 3.879 10 C -0.576 4.576 11 H 0.088 0.912 12 C -0.212 4.212 13 N -0.585 5.585 14 Si 0.804 3.196 15 H -0.179 1.179 16 H -0.197 1.197 17 H -0.209 1.209 18 N -0.039 5.039 19 H 0.323 0.677 20 N -0.057 5.057 21 H 0.146 0.854 22 H 0.169 0.831 23 H 0.139 0.861 24 H 0.277 0.723 25 H 0.288 0.712 26 H 0.196 0.804 27 H -0.014 1.014 28 H -0.043 1.043 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -28.708 -10.398 5.026 30.944 hybrid contribution 1.622 0.147 -1.216 2.032 sum -27.086 -10.252 3.809 29.211 Atomic orbital electron populations 1.23366 0.66589 1.09677 1.08540 1.47560 1.11629 1.03570 1.37889 1.23918 0.86654 0.97181 1.06123 1.42094 1.27004 0.87998 0.98536 1.77858 0.84874 0.71636 0.73312 1.85261 1.62093 1.57570 1.73080 1.92492 1.64311 1.72304 1.76552 1.57978 1.32273 1.63951 1.27065 1.18320 0.86143 0.89502 0.93887 1.22080 1.11649 1.26791 0.97091 0.91213 1.26278 0.96438 0.94864 1.03659 1.70194 1.18932 1.31299 1.38114 0.85182 0.77913 0.78393 0.78089 1.17897 1.19709 1.20934 1.45305 1.05429 1.09784 1.43406 0.67718 1.78108 0.92205 1.11522 1.23855 0.85398 0.83119 0.86103 0.72339 0.71201 0.80386 1.01427 1.04314 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.30 11.35 127.77 1.45 1.15 15 2 N -0.21 -1.47 3.69 -370.48 -1.37 -2.84 15 3 C 0.01 0.16 11.47 83.73 0.96 1.12 15 4 C -0.36 -8.83 7.52 83.49 0.63 -8.21 15 5 S 1.85 80.85 5.55 -56.49 -0.31 80.54 15 6 O -0.93 -38.86 13.56 -126.85 -1.72 -40.58 15 7 O -1.07 -64.37 18.14 -126.85 -2.30 -66.67 15 8 N -1.07 -53.33 6.07 -190.79 -1.16 -54.49 15 9 C 0.25 16.59 6.07 85.63 0.52 17.11 15 10 C -0.54 -34.81 9.27 25.60 0.24 -34.57 15 11 H 0.07 4.18 7.65 -2.91 -0.02 4.16 15 12 C -0.02 -1.02 5.46 84.65 0.46 -0.56 15 13 N -0.94 -65.05 13.29 21.45 0.28 -64.76 15 14 Si 0.98 48.27 29.54 68.60 2.03 50.30 15 15 H -0.26 -11.64 7.11 99.48 0.71 -10.94 15 16 H -0.27 -12.68 7.11 99.48 0.71 -11.98 15 17 H -0.28 -13.73 7.11 99.48 0.71 -13.02 15 18 N -0.31 -6.40 6.98 -55.31 -0.39 -6.79 15 19 H 0.47 9.70 8.96 -219.97 -1.97 7.72 15 20 N -0.08 -1.13 13.15 37.02 0.49 -0.64 15 21 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 15 22 H 0.15 -1.69 8.14 -2.39 -0.02 -1.71 15 23 H 0.12 -0.83 8.14 -2.39 -0.02 -0.85 15 24 H 0.26 0.26 8.06 -2.91 -0.02 0.24 15 25 H 0.43 11.43 9.03 -87.94 -0.79 10.64 15 26 H 0.37 15.98 8.54 -96.74 -0.83 15.15 15 27 H -0.03 -2.21 8.14 -2.39 -0.02 -2.23 15 28 H -0.06 -4.72 8.14 -2.39 -0.02 -4.73 15 29 H 0.26 16.70 8.31 -92.71 -0.77 15.93 15 Total: -1.00 -120.06 273.67 -2.57 -122.63 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -2.38 Total: 7.27 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.26 Total: -23.96 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -2.14 Total: -129.52 kcal Atomic # 8 Polarization: -103.23 SS G_CDS: -4.02 Total: -107.25 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Atomic # 16 Polarization: 80.85 SS G_CDS: -0.31 Total: 80.54 kcal Total: -120.06 -2.57 -122.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662204.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.991 kcal (2) G-P(sol) polarization free energy of solvation -120.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -122.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds