Wall clock time and date at job start Mon Mar 30 2020 04:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28635 * 125.55730 * 2 1 4 4 N 1.28714 * 110.17993 * 179.97438 * 3 2 1 5 5 H 0.96996 * 125.86605 * 180.02562 * 4 3 2 6 6 C 1.35317 * 108.26168 * 359.73924 * 4 3 2 7 7 C 1.33778 * 125.55928 * 179.97438 * 2 1 3 8 8 S 1.76195 * 126.74926 * 0.02562 * 7 2 1 9 9 O 1.52205 * 109.46817 * 210.00550 * 8 7 2 10 10 O 1.42104 * 109.47361 * 329.99937 * 8 7 2 11 11 N 1.65599 * 109.47305 * 90.00504 * 8 7 2 12 12 C 1.46499 * 120.00012 * 180.02562 * 11 8 7 13 13 C 1.50701 * 109.46992 * 164.99696 * 12 11 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 H 1.08995 * 109.47106 * 270.01618 * 1 2 3 22 22 H 1.08992 * 109.47186 * 30.02738 * 1 2 3 23 23 H 1.09001 * 109.46677 * 150.02509 * 1 2 3 24 24 H 1.08004 * 126.90867 * 180.26920 * 6 4 3 25 25 H 0.96701 * 113.99477 * 299.99474 * 9 8 7 26 26 H 0.97001 * 119.99797 * 359.97438 * 11 8 7 27 27 H 1.09002 * 109.47391 * 44.99686 * 12 11 8 28 28 H 1.09001 * 109.46813 * 284.99743 * 12 11 8 29 29 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2131 1.0465 0.0000 4 7 3.4541 0.7052 0.0005 5 1 4.2105 1.3124 0.0010 6 6 3.5222 -0.6463 0.0068 7 6 2.2430 -1.0883 0.0005 8 16 1.7076 -2.7669 0.0006 9 8 2.7371 -3.6277 0.7188 10 8 0.4580 -2.8655 0.6701 11 7 1.5405 -3.2932 -1.5606 12 6 1.1024 -4.6653 -1.8282 13 6 0.6789 -4.7853 -3.2695 14 1 0.7313 -3.9257 -3.9211 15 6 0.2255 -5.9930 -3.7565 16 7 0.1622 -7.0399 -2.9631 17 14 -0.2987 -6.1419 -5.5432 18 1 0.8482 -5.8073 -6.4252 19 1 -0.7430 -7.5327 -5.8144 20 1 -1.4187 -5.2041 -5.8103 21 1 -0.3633 0.0003 1.0276 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 4.4173 -1.2506 0.0129 25 1 3.6158 -3.6085 0.3155 26 1 1.7320 -2.6927 -2.2979 27 1 0.2607 -4.9108 -1.1805 28 1 1.9244 -5.3538 -1.6324 29 1 -0.1571 -7.8894 -3.3057 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:24 Heat of formation + Delta-G solvation = 34.635852 kcal Electronic energy + Delta-G solvation = -16472.430011 eV Core-core repulsion = 13561.178006 eV Total energy + Delta-G solvation = -2911.252005 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.05435 -37.10500 -36.50409 -35.64467 -35.35051 -33.26642 -32.34349 -30.00393 -27.97664 -24.47707 -24.09634 -23.63703 -20.29165 -19.84857 -18.80780 -18.12822 -17.49504 -17.09470 -16.75271 -16.31903 -15.73615 -14.98238 -14.65257 -14.59592 -14.23499 -13.93518 -13.80530 -13.36387 -13.22567 -12.84550 -12.64145 -12.19447 -11.97642 -11.81249 -11.48869 -11.06092 -10.78816 -10.62198 -10.52889 -8.68982 -8.11145 -6.23978 -5.63140 -0.13272 0.91599 0.98147 1.40220 1.47412 1.54962 1.90395 2.46263 3.12989 3.20292 3.44911 3.65011 3.94002 4.25987 4.32817 4.50662 4.67045 4.81273 5.12119 5.32642 5.63522 5.71234 5.82624 6.10285 6.42565 6.51891 6.86851 7.12730 7.43533 7.76527 9.01951 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.034448 B = 0.006222 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.621670 B = 4499.018506 C = 4728.870029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.193 5.193 3 N -0.076 5.076 4 N -0.298 5.298 5 H 0.489 0.511 6 C 0.035 3.965 7 C -0.383 4.383 8 S 1.846 4.154 9 O -0.930 6.930 10 O -1.059 7.059 11 N -1.066 6.066 12 C 0.255 3.745 13 C -0.537 4.537 14 H 0.069 0.931 15 C -0.015 4.015 16 N -0.944 5.944 17 Si 0.980 3.020 18 H -0.257 1.257 19 H -0.285 1.285 20 H -0.269 1.269 21 H 0.109 0.891 22 H 0.139 0.861 23 H 0.091 0.909 24 H 0.264 0.736 25 H 0.426 0.574 26 H 0.369 0.631 27 H -0.060 1.060 28 H -0.035 1.035 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.656 24.247 3.854 27.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N 0.005 4.995 3 N -0.052 5.052 4 N -0.033 5.033 5 H 0.345 0.655 6 C -0.119 4.119 7 C -0.577 4.577 8 S 1.915 4.085 9 O -0.782 6.782 10 O -1.047 7.047 11 N -0.812 5.812 12 C 0.124 3.876 13 C -0.576 4.576 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.585 5.585 17 Si 0.803 3.197 18 H -0.181 1.181 19 H -0.210 1.210 20 H -0.194 1.194 21 H 0.127 0.873 22 H 0.157 0.843 23 H 0.109 0.891 24 H 0.280 0.720 25 H 0.286 0.714 26 H 0.194 0.806 27 H -0.042 1.042 28 H -0.018 1.018 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.317 24.662 5.063 27.603 hybrid contribution -0.146 -0.900 -1.217 1.520 sum 11.172 23.762 3.846 26.537 Atomic orbital electron populations 1.22770 0.69509 1.07093 1.07127 1.46981 1.10425 1.02832 1.39249 1.78090 0.91036 1.12703 1.23366 1.45166 1.06281 1.09913 1.41922 0.65453 1.24305 1.00690 0.82608 1.04324 1.41549 0.97458 1.18831 0.99910 1.78467 0.79568 0.76998 0.73449 1.85276 1.34374 1.85340 1.73194 1.92478 1.49660 1.86156 1.76423 1.58036 1.82050 1.14148 1.26975 1.18286 0.89625 0.85851 0.93832 1.22018 1.42554 0.96141 0.96936 0.91250 1.26259 0.95889 0.95407 1.03567 1.70179 1.48514 1.01700 1.38148 0.85308 0.79054 0.77024 0.78343 1.18136 1.21001 1.19374 0.87262 0.84275 0.89054 0.71988 0.71389 0.80578 1.04193 1.01782 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.60 10.60 127.77 1.35 2.95 15 2 N -0.19 -4.05 3.69 -367.63 -1.36 -5.41 15 3 N -0.08 -0.98 13.15 37.02 0.49 -0.49 15 4 N -0.30 -1.44 6.98 -57.35 -0.40 -1.84 15 5 H 0.49 -3.06 8.96 -219.96 -1.97 -5.03 15 6 C 0.03 0.35 12.07 83.49 1.01 1.36 15 7 C -0.38 -9.31 7.12 83.73 0.60 -8.71 15 8 S 1.85 79.08 5.13 -56.49 -0.29 78.79 15 9 O -0.93 -38.85 13.56 -126.85 -1.72 -40.57 15 10 O -1.06 -60.94 16.63 -126.85 -2.11 -63.05 15 11 N -1.07 -52.55 6.07 -190.79 -1.16 -53.71 15 12 C 0.25 16.56 6.07 85.63 0.52 17.08 15 13 C -0.54 -34.43 9.27 25.60 0.24 -34.19 15 14 H 0.07 4.10 7.65 -2.91 -0.02 4.07 15 15 C -0.01 -0.93 5.46 84.66 0.46 -0.47 15 16 N -0.94 -64.63 13.29 21.45 0.28 -64.34 15 17 Si 0.98 47.77 29.54 68.60 2.03 49.80 15 18 H -0.26 -11.57 7.11 99.48 0.71 -10.87 15 19 H -0.28 -13.55 7.11 99.48 0.71 -12.85 15 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 21 H 0.11 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.14 1.67 8.14 -2.39 -0.02 1.65 15 23 H 0.09 2.74 7.00 -2.39 -0.02 2.73 15 24 H 0.26 -0.05 8.06 -2.91 -0.02 -0.07 15 25 H 0.43 11.51 9.03 -87.93 -0.79 10.71 15 26 H 0.37 15.75 8.54 -96.75 -0.83 14.92 15 27 H -0.06 -4.56 8.14 -2.39 -0.02 -4.58 15 28 H -0.04 -2.45 8.14 -2.39 -0.02 -2.46 15 29 H 0.26 16.67 8.31 -92.71 -0.77 15.90 15 Total: -1.00 -115.88 270.06 -2.44 -118.32 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -2.38 Total: 4.50 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 4.18 Total: -21.99 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -2.14 Total: -125.79 kcal Atomic # 8 Polarization: -99.79 SS G_CDS: -3.83 Total: -103.62 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Atomic # 16 Polarization: 79.08 SS G_CDS: -0.29 Total: 78.79 kcal Total: -115.88 -2.44 -118.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.953 kcal (2) G-P(sol) polarization free energy of solvation -115.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -118.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds