Wall clock time and date at job start Mon Mar 30 2020 04:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28629 * 125.55320 * 2 1 4 4 N 1.28714 * 110.17860 * 179.97438 * 3 2 1 5 5 H 0.97005 * 125.87250 * 180.02562 * 4 3 2 6 6 C 1.35312 * 108.26416 * 0.02562 * 4 3 2 7 7 C 1.33767 * 125.55788 * 179.69222 * 2 1 3 8 8 S 1.76198 * 126.75208 * 359.97438 * 7 2 1 9 9 O 1.52206 * 109.47424 * 89.99841 * 8 7 2 10 10 O 1.42099 * 109.47348 * 329.99633 * 8 7 2 11 11 N 1.65598 * 109.47168 * 209.99860 * 8 7 2 12 12 C 1.46502 * 120.00236 * 179.97438 * 11 8 7 13 13 C 1.50700 * 109.47440 * 165.00020 * 12 11 8 14 14 H 1.08002 * 119.99716 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00360 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00529 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99840 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47462 * 89.99750 * 17 15 13 19 19 H 1.48502 * 109.47030 * 210.00186 * 17 15 13 20 20 H 1.48508 * 109.47000 * 329.99590 * 17 15 13 21 21 H 1.09001 * 109.47060 * 90.02876 * 1 2 3 22 22 H 1.09004 * 109.47073 * 210.02365 * 1 2 3 23 23 H 1.09000 * 109.47212 * 330.02448 * 1 2 3 24 24 H 1.08001 * 126.91875 * 180.02562 * 6 4 3 25 25 H 0.96698 * 113.99721 * 59.99869 * 9 8 7 26 26 H 0.97000 * 120.00282 * 359.97438 * 11 8 7 27 27 H 1.08997 * 109.47236 * 285.00116 * 12 11 8 28 28 H 1.09002 * 109.46781 * 45.00044 * 12 11 8 29 29 H 0.96996 * 120.00458 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2130 1.0465 0.0000 4 7 3.4541 0.7052 0.0005 5 1 4.2106 1.3124 0.0010 6 6 3.5223 -0.6462 0.0003 7 6 2.2429 -1.0882 0.0058 8 16 1.7075 -2.7668 0.0155 9 8 1.5528 -3.2583 -1.4167 10 8 0.4585 -2.8618 0.6864 11 7 2.8283 -3.6992 0.8010 12 6 2.6113 -5.1410 0.9435 13 6 3.9017 -5.8057 1.3487 14 1 4.7943 -5.2133 1.4859 15 6 3.9431 -7.1699 1.5433 16 7 5.0693 -7.7500 1.8964 17 14 2.3997 -8.1947 1.3039 18 1 2.3207 -8.6486 -0.1078 19 1 2.4460 -9.3765 2.2020 20 1 1.2052 -7.3737 1.6275 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5134 24 1 4.4173 -1.2506 0.0011 25 1 2.3682 -3.2219 -1.9352 26 1 3.6285 -3.2907 1.1667 27 1 1.8546 -5.3209 1.7071 28 1 2.2732 -5.5533 -0.0072 29 1 5.0983 -8.7098 2.0337 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725662323.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:27 Heat of formation + Delta-G solvation = 84.021404 kcal Electronic energy + Delta-G solvation = -16479.205287 eV Core-core repulsion = 13570.094800 eV Total energy + Delta-G solvation = -2909.110487 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.12507 -36.04346 -35.16311 -33.85469 -33.60526 -31.49917 -31.40392 -29.16134 -26.39340 -23.57447 -23.11372 -21.25778 -19.36073 -18.37740 -17.28220 -17.06003 -16.67741 -15.64991 -15.37448 -14.47717 -14.13322 -13.96375 -13.88651 -13.09867 -12.97120 -12.48537 -12.14199 -12.09647 -11.80101 -10.99736 -10.93231 -10.54048 -10.44246 -9.84784 -9.70166 -9.59064 -9.31575 -9.00627 -8.41141 -7.15555 -5.88775 -4.27751 -3.83190 0.63644 1.72392 1.81229 2.65176 3.48160 3.53588 3.67250 4.29540 4.40659 4.64012 4.78932 4.82212 4.97838 5.11806 5.22389 5.47680 5.62777 6.02756 6.18593 6.39109 7.14798 7.40901 7.62244 7.68156 7.89967 8.25786 8.85832 9.01169 9.25232 9.79032 11.24750 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.006476 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.765818 B = 4322.580515 C = 4755.190659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.199 5.199 3 N -0.104 5.104 4 N -0.327 5.327 5 H 0.462 0.538 6 C 0.001 3.999 7 C -0.354 4.354 8 S 1.872 4.128 9 O -0.938 6.938 10 O -0.988 6.988 11 N -1.058 6.058 12 C 0.216 3.784 13 C -0.512 4.512 14 H 0.076 0.924 15 C 0.064 3.936 16 N -0.909 5.909 17 Si 0.872 3.128 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.263 1.263 21 H 0.093 0.907 22 H 0.144 0.856 23 H 0.099 0.901 24 H 0.217 0.783 25 H 0.404 0.596 26 H 0.375 0.625 27 H -0.005 1.005 28 H -0.001 1.001 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.574 22.595 -6.632 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.004 5.004 3 N -0.079 5.079 4 N -0.055 5.055 5 H 0.312 0.688 6 C -0.157 4.157 7 C -0.547 4.547 8 S 1.944 4.056 9 O -0.788 6.788 10 O -0.974 6.974 11 N -0.807 5.807 12 C 0.087 3.913 13 C -0.551 4.551 14 H 0.094 0.906 15 C -0.136 4.136 16 N -0.549 5.549 17 Si 0.699 3.301 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.187 1.187 21 H 0.111 0.889 22 H 0.162 0.838 23 H 0.117 0.883 24 H 0.234 0.766 25 H 0.261 0.739 26 H 0.202 0.798 27 H 0.013 0.987 28 H 0.017 0.983 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.586 23.143 -6.673 24.351 hybrid contribution 0.610 -1.005 -0.029 1.176 sum -2.976 22.139 -6.702 23.321 Atomic orbital electron populations 1.22889 0.70263 1.08487 1.05739 1.47138 1.09446 1.02251 1.41552 1.78065 0.89938 1.13977 1.25895 1.45073 1.06605 1.09923 1.43888 0.68814 1.23849 1.01463 0.82002 1.08359 1.41716 0.95388 1.16510 1.01065 1.72785 0.81030 0.77242 0.74516 1.85425 1.47883 1.92010 1.53432 1.92585 1.48439 1.84684 1.71723 1.55935 1.35069 1.14159 1.75552 1.19142 0.96382 0.81952 0.93832 1.21445 0.95778 0.92616 1.45274 0.90620 1.24937 0.95830 0.97976 0.94876 1.69914 1.25725 1.10423 1.48815 0.86888 0.84983 0.79961 0.78257 1.20243 1.21370 1.18731 0.88899 0.83801 0.88289 0.76605 0.73903 0.79771 0.98742 0.98280 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 11.15 59.85 0.67 1.32 15 2 N -0.20 -2.21 3.69 -67.54 -0.25 -2.46 15 3 N -0.10 -0.88 13.15 60.35 0.79 -0.09 15 4 N -0.33 -1.78 6.98 30.52 0.21 -1.57 15 5 H 0.46 0.25 8.96 -190.40 -1.71 -1.46 15 6 C 0.00 0.01 12.04 -17.05 -0.21 -0.20 15 7 C -0.35 -4.52 7.12 -17.74 -0.13 -4.64 15 8 S 1.87 36.87 5.34 -107.50 -0.57 36.30 15 9 O -0.94 -18.70 13.56 -58.38 -0.79 -19.49 15 10 O -0.99 -24.98 15.87 -58.38 -0.93 -25.91 15 11 N -1.06 -23.53 6.07 -11.65 -0.07 -23.60 15 12 C 0.22 6.07 5.13 -5.19 -0.03 6.04 15 13 C -0.51 -15.48 9.83 -34.44 -0.34 -15.82 15 14 H 0.08 2.33 7.90 -52.49 -0.41 1.91 15 15 C 0.06 2.00 5.47 -17.82 -0.10 1.90 15 16 N -0.91 -29.00 13.96 55.43 0.77 -28.22 15 17 Si 0.87 23.86 27.47 -169.99 -4.67 19.19 15 18 H -0.28 -7.38 7.11 56.52 0.40 -6.98 15 19 H -0.29 -7.62 7.11 56.52 0.40 -7.22 15 20 H -0.26 -7.32 6.54 56.52 0.37 -6.95 15 21 H 0.09 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.14 1.94 5.78 -51.93 -0.30 1.64 15 23 H 0.10 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.22 1.04 8.06 -52.49 -0.42 0.61 15 25 H 0.40 5.88 9.03 67.38 0.61 6.48 15 26 H 0.38 7.22 8.50 -34.47 -0.29 6.92 15 27 H -0.01 -0.16 7.20 -51.93 -0.37 -0.53 15 28 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 15 29 H 0.26 7.81 8.31 -40.82 -0.34 7.48 15 LS Contribution 265.17 15.07 4.00 4.00 Total: -1.00 -46.28 265.17 -4.94 -51.22 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.31 Total: 2.03 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.13 Total: -11.40 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 1.46 Total: -55.94 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.72 Total: -45.40 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.67 Total: 19.19 kcal Atomic # 16 Polarization: 36.87 SS G_CDS: -0.57 Total: 36.30 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -46.28 -4.94 -51.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662323.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.240 kcal (2) G-P(sol) polarization free energy of solvation -46.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds