Wall clock time and date at job start Mon Mar 30 2020 04:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28629 * 125.55320 * 2 1 4 4 N 1.28714 * 110.17860 * 179.97438 * 3 2 1 5 5 H 0.97005 * 125.87250 * 180.02562 * 4 3 2 6 6 C 1.35312 * 108.26416 * 0.02562 * 4 3 2 7 7 C 1.33767 * 125.55788 * 179.69222 * 2 1 3 8 8 S 1.76198 * 126.75208 * 359.97438 * 7 2 1 9 9 O 1.52206 * 109.47424 * 89.99841 * 8 7 2 10 10 O 1.42099 * 109.47348 * 329.99633 * 8 7 2 11 11 N 1.65598 * 109.47168 * 209.99860 * 8 7 2 12 12 C 1.46502 * 120.00236 * 179.97438 * 11 8 7 13 13 C 1.50700 * 109.47440 * 165.00020 * 12 11 8 14 14 H 1.08002 * 119.99716 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00360 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00529 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99840 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47462 * 89.99750 * 17 15 13 19 19 H 1.48502 * 109.47030 * 210.00186 * 17 15 13 20 20 H 1.48508 * 109.47000 * 329.99590 * 17 15 13 21 21 H 1.09001 * 109.47060 * 90.02876 * 1 2 3 22 22 H 1.09004 * 109.47073 * 210.02365 * 1 2 3 23 23 H 1.09000 * 109.47212 * 330.02448 * 1 2 3 24 24 H 1.08001 * 126.91875 * 180.02562 * 6 4 3 25 25 H 0.96698 * 113.99721 * 59.99869 * 9 8 7 26 26 H 0.97000 * 120.00282 * 359.97438 * 11 8 7 27 27 H 1.08997 * 109.47236 * 285.00116 * 12 11 8 28 28 H 1.09002 * 109.46781 * 45.00044 * 12 11 8 29 29 H 0.96996 * 120.00458 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2130 1.0465 0.0000 4 7 3.4541 0.7052 0.0005 5 1 4.2106 1.3124 0.0010 6 6 3.5223 -0.6462 0.0003 7 6 2.2429 -1.0882 0.0058 8 16 1.7075 -2.7668 0.0155 9 8 1.5528 -3.2583 -1.4167 10 8 0.4585 -2.8618 0.6864 11 7 2.8283 -3.6992 0.8010 12 6 2.6113 -5.1410 0.9435 13 6 3.9017 -5.8057 1.3487 14 1 4.7943 -5.2133 1.4859 15 6 3.9431 -7.1699 1.5433 16 7 5.0693 -7.7500 1.8964 17 14 2.3997 -8.1947 1.3039 18 1 2.3207 -8.6486 -0.1078 19 1 2.4460 -9.3765 2.2020 20 1 1.2052 -7.3737 1.6275 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5134 24 1 4.4173 -1.2506 0.0011 25 1 2.3682 -3.2219 -1.9352 26 1 3.6285 -3.2907 1.1667 27 1 1.8546 -5.3209 1.7071 28 1 2.2732 -5.5533 -0.0072 29 1 5.0983 -8.7098 2.0337 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662323.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:26 Heat of formation + Delta-G solvation = 39.079791 kcal Electronic energy + Delta-G solvation = -16481.154101 eV Core-core repulsion = 13570.094800 eV Total energy + Delta-G solvation = -2911.059301 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.18072 -37.02218 -36.52121 -35.60758 -35.26748 -33.48765 -32.46380 -30.05488 -28.37276 -24.50598 -24.10403 -23.23687 -20.24893 -19.73678 -19.12901 -18.22336 -17.57595 -17.13530 -16.79709 -16.14007 -15.56725 -15.22401 -14.96194 -14.68206 -14.28456 -14.06579 -13.99374 -13.47282 -13.25640 -12.87773 -12.62827 -11.98097 -11.89562 -11.79351 -11.43537 -11.05468 -10.78599 -10.72082 -10.61067 -8.70553 -8.23895 -6.21205 -5.59949 -0.21180 0.84241 0.90065 1.32052 1.32973 1.50911 1.79916 2.40506 3.07081 3.11162 3.37629 3.62499 3.94846 4.21241 4.29734 4.49331 4.61462 4.87439 5.03006 5.08956 5.47462 5.66629 5.73395 5.91515 6.40626 6.55193 6.78967 7.14846 7.39382 7.78090 8.92111 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.006476 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.765818 B = 4322.580515 C = 4755.190659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.185 5.185 3 N -0.071 5.071 4 N -0.303 5.303 5 H 0.491 0.509 6 C 0.044 3.956 7 C -0.357 4.357 8 S 1.811 4.189 9 O -0.939 6.939 10 O -1.064 7.064 11 N -1.051 6.051 12 C 0.221 3.779 13 C -0.512 4.512 14 H 0.061 0.939 15 C 0.013 3.987 16 N -0.943 5.943 17 Si 0.926 3.074 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.279 1.279 21 H 0.122 0.878 22 H 0.108 0.892 23 H 0.137 0.863 24 H 0.259 0.741 25 H 0.421 0.579 26 H 0.375 0.625 27 H -0.049 1.049 28 H -0.016 1.016 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 26.243 -7.872 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N 0.016 4.984 3 N -0.047 5.047 4 N -0.038 5.038 5 H 0.347 0.653 6 C -0.106 4.106 7 C -0.548 4.548 8 S 1.872 4.128 9 O -0.791 6.791 10 O -1.052 7.052 11 N -0.798 5.798 12 C 0.089 3.911 13 C -0.551 4.551 14 H 0.079 0.921 15 C -0.185 4.185 16 N -0.584 5.584 17 Si 0.751 3.249 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.205 1.205 21 H 0.140 0.860 22 H 0.126 0.874 23 H 0.155 0.845 24 H 0.275 0.725 25 H 0.281 0.719 26 H 0.202 0.798 27 H -0.031 1.031 28 H 0.001 0.999 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.607 27.004 -7.937 28.266 hybrid contribution 0.344 -1.282 0.549 1.437 sum -2.262 25.721 -7.387 26.856 Atomic orbital electron populations 1.23159 0.69230 1.08576 1.07821 1.47816 1.10894 1.02855 1.36876 1.78131 0.91159 1.13348 1.22078 1.45245 1.06359 1.09875 1.42305 0.65281 1.24489 1.01217 0.82585 1.02329 1.42704 0.97725 1.17390 0.96951 1.82863 0.80652 0.77053 0.72277 1.85257 1.48833 1.91244 1.53796 1.92361 1.54222 1.86001 1.72631 1.57565 1.36630 1.10353 1.75202 1.18846 0.93516 0.87458 0.91299 1.21790 0.96341 0.92765 1.44243 0.92078 1.25692 0.98412 0.99353 0.95017 1.70006 1.27272 1.10995 1.50166 0.86035 0.81077 0.78620 0.79163 1.18759 1.19618 1.20500 0.85992 0.87388 0.84451 0.72501 0.71894 0.79841 1.03133 0.99863 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 11.15 127.77 1.42 2.31 15 2 N -0.18 -3.42 3.69 -367.60 -1.36 -4.77 15 3 N -0.07 -0.80 13.15 37.02 0.49 -0.32 15 4 N -0.30 -1.36 6.98 -57.35 -0.40 -1.76 15 5 H 0.49 -2.99 8.96 -219.95 -1.97 -4.96 15 6 C 0.04 0.47 12.04 83.49 1.01 1.47 15 7 C -0.36 -8.16 7.12 83.73 0.60 -7.56 15 8 S 1.81 73.13 5.34 -56.49 -0.30 72.83 15 9 O -0.94 -38.05 13.56 -126.85 -1.72 -39.77 15 10 O -1.06 -57.09 15.87 -126.85 -2.01 -59.10 15 11 N -1.05 -48.51 6.07 -190.78 -1.16 -49.67 15 12 C 0.22 13.07 5.13 85.63 0.44 13.51 15 13 C -0.51 -32.15 9.83 25.60 0.25 -31.90 15 14 H 0.06 3.89 7.90 -2.91 -0.02 3.86 15 15 C 0.01 0.81 5.47 84.65 0.46 1.27 15 16 N -0.94 -61.31 13.96 21.44 0.30 -61.01 15 17 Si 0.93 50.85 27.47 68.60 1.88 52.73 15 18 H -0.26 -13.72 7.11 99.48 0.71 -13.01 15 19 H -0.27 -13.97 7.11 99.48 0.71 -13.26 15 20 H -0.28 -16.07 6.54 99.48 0.65 -15.41 15 21 H 0.12 1.59 8.14 -2.39 -0.02 1.57 15 22 H 0.11 2.96 5.78 -2.38 -0.01 2.95 15 23 H 0.14 1.26 8.14 -2.39 -0.02 1.24 15 24 H 0.26 0.96 8.06 -2.91 -0.02 0.93 15 25 H 0.42 12.11 9.03 -87.93 -0.79 11.32 15 26 H 0.37 14.69 8.50 -96.74 -0.82 13.87 15 27 H -0.05 -3.22 7.20 -2.39 -0.02 -3.24 15 28 H -0.02 -1.00 7.57 -2.39 -0.02 -1.02 15 29 H 0.27 16.12 8.31 -92.71 -0.77 15.35 15 Total: -1.00 -109.01 265.17 -2.53 -111.53 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -2.43 Total: 0.19 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.18 Total: -20.89 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -2.13 Total: -117.53 kcal Atomic # 8 Polarization: -95.14 SS G_CDS: -3.73 Total: -98.87 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.88 Total: 52.73 kcal Atomic # 16 Polarization: 73.13 SS G_CDS: -0.30 Total: 72.83 kcal Total: -109.01 -2.53 -111.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662323.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.614 kcal (2) G-P(sol) polarization free energy of solvation -109.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -111.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds