Wall clock time and date at job start Mon Mar 30 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40443 * 126.60516 * 2 1 4 4 H 0.96995 * 126.82414 * 0.02562 * 3 2 1 5 5 C 1.34431 * 106.35149 * 179.97438 * 3 2 1 6 6 N 1.30829 * 108.08051 * 359.75594 * 5 3 2 7 7 C 1.30712 * 126.60054 * 179.97438 * 2 1 3 8 8 C 1.50701 * 125.52779 * 359.97438 * 7 2 1 9 9 N 1.46506 * 109.46827 * 90.00260 * 8 7 2 10 10 S 1.65604 * 119.99974 * 164.99901 * 9 8 7 11 11 O 1.52198 * 109.46834 * 59.99958 * 10 9 8 12 12 O 1.42096 * 109.47155 * 300.00282 * 10 9 8 13 13 C 1.76199 * 109.47140 * 180.02562 * 10 9 8 14 14 H 1.08005 * 119.99978 * 0.02562 * 13 10 9 15 15 C 1.37871 * 119.99882 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 H 1.08994 * 109.47534 * 270.02495 * 1 2 3 22 22 H 1.09000 * 109.46843 * 30.02375 * 1 2 3 23 23 H 1.08999 * 109.47059 * 150.02431 * 1 2 3 24 24 H 1.08003 * 125.95803 * 180.02562 * 5 3 2 25 25 H 1.08997 * 109.47329 * 330.00854 * 8 7 2 26 26 H 1.09002 * 109.47606 * 209.99986 * 8 7 2 27 27 H 0.96998 * 120.00112 * 345.00761 * 9 8 7 28 28 H 0.96703 * 113.99886 * 60.00678 * 11 10 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1274 0.0000 4 1 2.0258 2.0571 0.0003 5 6 3.5637 0.6621 0.0006 6 7 3.5140 -0.6453 0.0062 7 6 2.2444 -1.0494 0.0005 8 6 1.7819 -2.4837 0.0017 9 7 1.6316 -2.9494 -1.3793 10 16 1.4993 -4.5693 -1.6970 11 8 0.2752 -5.1275 -0.9854 12 8 2.6633 -5.2395 -1.2334 13 6 1.3330 -4.8154 -3.4338 14 1 1.3304 -3.9667 -4.1017 15 6 1.2060 -6.0915 -3.9401 16 7 1.2086 -7.1250 -3.1267 17 14 1.0290 -6.3524 -5.7813 18 1 -0.4098 -6.3312 -6.1482 19 1 1.7406 -5.2688 -6.5055 20 1 1.6155 -7.6649 -6.1539 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 4.4613 1.2627 0.0011 25 1 0.8235 -2.5560 0.5157 26 1 2.5176 -3.1023 0.5157 27 1 1.6097 -2.3090 -2.1074 28 1 -0.5576 -4.7152 -1.2533 29 1 1.3001 -6.9894 -2.1706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725662358.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:34 Heat of formation + Delta-G solvation = 73.964021 kcal Electronic energy + Delta-G solvation = -16440.836952 eV Core-core repulsion = 13531.290345 eV Total energy + Delta-G solvation = -2909.546608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.05568 -36.48142 -34.52806 -34.24751 -33.33053 -32.99374 -30.81220 -26.90649 -25.78087 -24.91809 -21.76893 -19.93768 -19.55436 -18.89734 -17.77883 -17.05010 -15.19870 -15.12047 -15.08180 -14.60743 -14.22870 -14.00401 -13.88500 -13.08543 -12.73835 -12.48711 -12.34793 -12.24983 -11.82860 -11.53668 -11.20142 -10.76350 -10.44174 -10.31036 -9.50314 -9.34472 -9.19750 -9.00725 -8.69031 -8.11963 -7.30760 -5.51331 -3.21836 0.67159 2.57979 3.07937 3.16873 3.34093 3.56320 3.92256 4.14186 4.58463 4.85469 4.93456 5.22112 5.35107 5.49199 5.68692 5.74269 5.90887 6.02514 6.36871 6.68973 6.82352 7.26759 7.34839 7.69684 7.94732 8.12251 8.26886 8.46918 8.50133 9.21406 10.07260 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037337 B = 0.006174 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.755331 B = 4533.834410 C = 4654.889670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.412 5.412 3 N -0.548 5.548 4 H 0.421 0.579 5 C 0.180 3.820 6 N -0.468 5.468 7 C 0.080 3.920 8 C 0.211 3.789 9 N -1.054 6.054 10 S 2.211 3.789 11 O -0.898 6.898 12 O -0.970 6.970 13 C -1.038 5.038 14 H 0.103 0.897 15 C 0.078 3.922 16 N -0.845 5.845 17 Si 1.073 2.927 18 H -0.275 1.275 19 H -0.277 1.277 20 H -0.273 1.273 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.201 0.799 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.367 0.633 28 H 0.428 0.572 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 14.911 2.951 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.228 5.228 3 N -0.286 5.286 4 H 0.263 0.737 5 C -0.112 4.112 6 N -0.190 5.190 7 C -0.175 4.175 8 C 0.089 3.911 9 N -0.810 5.810 10 S 2.353 3.647 11 O -0.747 6.747 12 O -0.958 6.958 13 C -1.173 5.173 14 H 0.121 0.879 15 C -0.140 4.140 16 N -0.475 5.475 17 Si 0.896 3.104 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.198 1.198 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.217 0.783 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.199 0.801 28 H 0.289 0.711 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.126 11.009 2.563 12.412 hybrid contribution -0.790 2.606 -0.262 2.735 sum -5.916 13.615 2.301 15.022 Atomic orbital electron populations 1.21422 0.76061 1.02753 1.01409 1.44570 1.01746 0.97415 1.79053 1.44265 1.01979 1.01312 1.81030 0.73680 1.23884 0.86640 0.91290 1.09340 1.69898 1.20661 1.10227 1.18232 1.21102 0.84791 0.88877 1.22693 1.19682 0.97353 0.85914 0.88154 1.63114 1.88817 1.18960 1.10127 1.33392 0.75601 0.78697 0.77029 1.85696 1.33384 1.77137 1.78505 1.93098 1.44649 1.76458 1.81607 1.31408 1.66604 1.02095 1.17168 0.87897 1.26167 0.88678 0.90578 1.08583 1.70827 1.36740 1.33358 1.06610 0.83525 0.77613 0.77004 0.72225 1.20105 1.20258 1.19827 0.93398 0.92347 0.90200 0.78289 0.93753 0.91361 0.80063 0.71125 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 76. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.37 11.03 59.85 0.66 2.03 15 2 N -0.41 -6.13 3.92 -65.38 -0.26 -6.38 15 3 N -0.55 -6.95 7.34 29.53 0.22 -6.73 15 4 H 0.42 3.63 8.96 -182.34 -1.63 2.00 15 5 C 0.18 2.60 13.13 -90.66 -1.19 1.41 15 6 N -0.47 -9.03 11.19 -11.97 -0.13 -9.16 15 7 C 0.08 1.49 7.30 -156.85 -1.14 0.34 15 8 C 0.21 4.05 6.33 -5.19 -0.03 4.02 15 9 N -1.05 -21.14 6.07 -11.65 -0.07 -21.21 15 10 S 2.21 53.70 4.29 -107.50 -0.46 53.24 15 11 O -0.90 -19.42 12.92 -58.38 -0.75 -20.18 15 12 O -0.97 -29.81 17.47 -58.38 -1.02 -30.83 15 13 C -1.04 -27.02 9.99 30.60 0.31 -26.72 15 14 H 0.10 2.50 7.81 -52.48 -0.41 2.09 15 15 C 0.08 2.14 5.46 -17.82 -0.10 2.04 15 16 N -0.85 -25.08 13.66 55.43 0.76 -24.32 15 17 Si 1.07 23.19 29.90 -169.99 -5.08 18.11 15 18 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 21 H 0.05 0.46 8.14 -51.93 -0.42 0.03 15 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.08 0.85 7.55 -51.93 -0.39 0.46 15 24 H 0.20 1.98 8.06 -52.48 -0.42 1.56 15 25 H 0.04 0.73 7.59 -51.93 -0.39 0.33 15 26 H 0.07 1.49 8.14 -51.93 -0.42 1.06 15 27 H 0.37 6.95 8.65 -34.47 -0.30 6.65 15 28 H 0.43 6.55 9.03 67.38 0.61 7.16 15 29 H 0.28 8.65 6.08 -40.82 -0.25 8.41 15 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -38.84 269.49 -7.50 -46.34 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -3.26 Total: 13.94 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.50 Total: -16.88 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: 0.51 Total: -67.81 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -1.77 Total: -51.01 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.08 Total: 18.11 kcal Atomic # 16 Polarization: 53.70 SS G_CDS: -0.46 Total: 53.24 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -38.84 -7.50 -46.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662358.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.308 kcal (2) G-P(sol) polarization free energy of solvation -38.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds