Wall clock time and date at job start Mon Mar 30 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40443 * 126.60516 * 2 1 4 4 H 0.96995 * 126.82414 * 0.02562 * 3 2 1 5 5 C 1.34431 * 106.35149 * 179.97438 * 3 2 1 6 6 N 1.30829 * 108.08051 * 359.75594 * 5 3 2 7 7 C 1.30712 * 126.60054 * 179.97438 * 2 1 3 8 8 C 1.50701 * 125.52779 * 359.97438 * 7 2 1 9 9 N 1.46506 * 109.46827 * 90.00260 * 8 7 2 10 10 S 1.65604 * 119.99974 * 164.99901 * 9 8 7 11 11 O 1.52198 * 109.46834 * 59.99958 * 10 9 8 12 12 O 1.42096 * 109.47155 * 300.00282 * 10 9 8 13 13 C 1.76199 * 109.47140 * 180.02562 * 10 9 8 14 14 H 1.08005 * 119.99978 * 0.02562 * 13 10 9 15 15 C 1.37871 * 119.99882 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 H 1.08994 * 109.47534 * 270.02495 * 1 2 3 22 22 H 1.09000 * 109.46843 * 30.02375 * 1 2 3 23 23 H 1.08999 * 109.47059 * 150.02431 * 1 2 3 24 24 H 1.08003 * 125.95803 * 180.02562 * 5 3 2 25 25 H 1.08997 * 109.47329 * 330.00854 * 8 7 2 26 26 H 1.09002 * 109.47606 * 209.99986 * 8 7 2 27 27 H 0.96998 * 120.00112 * 345.00761 * 9 8 7 28 28 H 0.96703 * 113.99886 * 60.00678 * 11 10 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1274 0.0000 4 1 2.0258 2.0571 0.0003 5 6 3.5637 0.6621 0.0006 6 7 3.5140 -0.6453 0.0062 7 6 2.2444 -1.0494 0.0005 8 6 1.7819 -2.4837 0.0017 9 7 1.6316 -2.9494 -1.3793 10 16 1.4993 -4.5693 -1.6970 11 8 0.2752 -5.1275 -0.9854 12 8 2.6633 -5.2395 -1.2334 13 6 1.3330 -4.8154 -3.4338 14 1 1.3304 -3.9667 -4.1017 15 6 1.2060 -6.0915 -3.9401 16 7 1.2086 -7.1250 -3.1267 17 14 1.0290 -6.3524 -5.7813 18 1 -0.4098 -6.3312 -6.1482 19 1 1.7406 -5.2688 -6.5055 20 1 1.6155 -7.6649 -6.1539 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 4.4613 1.2627 0.0011 25 1 0.8235 -2.5560 0.5157 26 1 2.5176 -3.1023 0.5157 27 1 1.6097 -2.3090 -2.1074 28 1 -0.5576 -4.7152 -1.2533 29 1 1.3001 -6.9894 -2.1706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662358.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:34 Heat of formation + Delta-G solvation = 34.071351 kcal Electronic energy + Delta-G solvation = -16442.566828 eV Core-core repulsion = 13531.290345 eV Total energy + Delta-G solvation = -2911.276484 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.51343 -36.94070 -35.84028 -35.56311 -34.99281 -34.66584 -32.57918 -28.51192 -27.14407 -26.38732 -23.74033 -21.78663 -20.46973 -20.00062 -19.54694 -18.00797 -17.00900 -16.89568 -16.38574 -15.82976 -15.74899 -15.62963 -15.15498 -14.36275 -14.09843 -13.96379 -13.76928 -13.43526 -13.15024 -12.77544 -12.56185 -12.07982 -12.05275 -11.58279 -11.38838 -11.18000 -10.94844 -10.84838 -9.96234 -8.97263 -8.96026 -6.93486 -4.80170 -0.44908 0.55756 1.36104 1.48781 1.68066 1.81808 2.45287 2.83465 3.02690 3.15710 3.48989 3.88366 4.02462 4.13926 4.36607 4.50429 4.72334 4.79536 4.94408 5.02335 5.17619 5.68527 5.80797 6.02231 6.20569 6.46384 6.82458 7.09866 7.20952 7.40072 8.39069 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037337 B = 0.006174 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.755331 B = 4533.834410 C = 4654.889670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.359 5.359 3 N -0.477 5.477 4 H 0.469 0.531 5 C 0.338 3.662 6 N -0.564 5.564 7 C 0.258 3.742 8 C 0.181 3.819 9 N -1.046 6.046 10 S 2.017 3.983 11 O -0.938 6.938 12 O -1.098 7.098 13 C -1.053 5.053 14 H 0.076 0.924 15 C 0.003 3.997 16 N -0.921 5.921 17 Si 1.103 2.897 18 H -0.248 1.248 19 H -0.267 1.267 20 H -0.283 1.283 21 H 0.103 0.897 22 H 0.118 0.882 23 H 0.097 0.903 24 H 0.292 0.708 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.340 0.660 28 H 0.418 0.582 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 30.756 7.753 32.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.159 5.159 3 N -0.209 5.209 4 H 0.322 0.678 5 C 0.042 3.958 6 N -0.291 5.291 7 C -0.012 4.012 8 C 0.052 3.948 9 N -0.796 5.796 10 S 2.144 3.856 11 O -0.787 6.787 12 O -1.086 7.086 13 C -1.180 5.180 14 H 0.095 0.905 15 C -0.200 4.200 16 N -0.557 5.557 17 Si 0.921 3.079 18 H -0.172 1.172 19 H -0.192 1.192 20 H -0.209 1.209 21 H 0.121 0.879 22 H 0.136 0.864 23 H 0.115 0.885 24 H 0.307 0.693 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.168 0.832 28 H 0.278 0.722 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.955 27.251 7.310 28.491 hybrid contribution -0.147 1.615 -0.047 1.623 sum -4.102 28.867 7.262 30.048 Atomic orbital electron populations 1.22598 0.70132 1.06913 1.05996 1.46665 1.05997 0.98048 1.65233 1.45710 1.02292 1.03754 1.69120 0.67848 1.26710 0.88931 0.90304 0.89841 1.70663 1.20146 1.12965 1.25316 1.23514 0.85783 0.91134 1.00751 1.20461 0.97978 0.83134 0.93208 1.65415 1.88300 1.20429 1.05456 1.58379 0.74215 0.78817 0.74190 1.85622 1.34373 1.79512 1.79232 1.92542 1.53323 1.80130 1.82606 1.32857 1.59868 0.99207 1.26106 0.90513 1.27600 0.89039 0.92021 1.11335 1.70905 1.45296 1.34321 1.05225 0.83262 0.79032 0.76238 0.69347 1.17233 1.19168 1.20881 0.87879 0.86403 0.88501 0.69309 0.90658 0.95277 0.83151 0.72182 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.03 127.77 1.41 1.95 15 2 N -0.36 -4.81 3.92 -360.76 -1.41 -6.23 15 3 N -0.48 -2.03 7.34 -60.49 -0.44 -2.48 15 4 H 0.47 -2.75 8.96 -213.10 -1.91 -4.66 15 5 C 0.34 2.83 13.13 180.36 2.37 5.19 15 6 N -0.56 -13.91 11.19 -191.80 -2.15 -16.05 15 7 C 0.26 6.68 7.30 138.63 1.01 7.70 15 8 C 0.18 6.72 6.33 85.63 0.54 7.27 15 9 N -1.05 -47.53 6.07 -190.78 -1.16 -48.69 15 10 S 2.02 125.68 4.29 -56.49 -0.24 125.44 15 11 O -0.94 -54.73 12.92 -126.85 -1.64 -56.36 15 12 O -1.10 -85.45 17.47 -126.85 -2.22 -87.67 15 13 C -1.05 -69.75 9.99 67.73 0.68 -69.07 15 14 H 0.08 4.74 7.81 -2.91 -0.02 4.71 15 15 C 0.00 0.24 5.46 84.65 0.46 0.70 15 16 N -0.92 -68.84 13.66 21.45 0.29 -68.54 15 17 Si 1.10 56.71 29.90 68.60 2.05 58.76 15 18 H -0.25 -11.23 7.11 99.48 0.71 -10.52 15 19 H -0.27 -12.67 7.11 99.48 0.71 -11.96 15 20 H -0.28 -14.47 7.11 99.48 0.71 -13.76 15 21 H 0.10 0.29 8.14 -2.39 -0.02 0.27 15 22 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 15 23 H 0.10 1.05 7.55 -2.39 -0.02 1.03 15 24 H 0.29 -1.30 8.06 -2.91 -0.02 -1.33 15 25 H 0.08 2.31 7.59 -2.39 -0.02 2.29 15 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 27 H 0.34 14.09 8.65 -96.75 -0.84 13.25 15 28 H 0.42 18.99 9.03 -87.93 -0.79 18.19 15 29 H 0.25 20.12 6.08 -92.71 -0.56 19.56 15 Total: -1.00 -127.19 269.49 -2.57 -129.76 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -2.12 Total: 18.33 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 6.47 Total: -46.27 kcal Atomic # 7 Polarization: -137.12 SS G_CDS: -4.87 Total: -141.99 kcal Atomic # 8 Polarization: -140.18 SS G_CDS: -3.86 Total: -144.04 kcal Atomic # 14 Polarization: 56.71 SS G_CDS: 2.05 Total: 58.76 kcal Atomic # 16 Polarization: 125.68 SS G_CDS: -0.24 Total: 125.44 kcal Total: -127.19 -2.57 -129.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662358.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.827 kcal (2) G-P(sol) polarization free energy of solvation -127.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -129.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds