Wall clock time and date at job start Mon Mar 30 2020 04:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40443 * 126.60516 * 2 1 4 4 H 0.96995 * 126.82414 * 0.02562 * 3 2 1 5 5 C 1.34431 * 106.35149 * 179.97438 * 3 2 1 6 6 N 1.30829 * 108.08051 * 359.75594 * 5 3 2 7 7 C 1.30712 * 126.60054 * 179.97438 * 2 1 3 8 8 C 1.50701 * 125.52779 * 359.97438 * 7 2 1 9 9 N 1.46506 * 109.46827 * 90.00260 * 8 7 2 10 10 S 1.65604 * 119.99974 * 164.99901 * 9 8 7 11 11 O 1.52196 * 109.46984 * 300.00337 * 10 9 8 12 12 O 1.42097 * 109.46743 * 60.00202 * 10 9 8 13 13 C 1.76199 * 109.47140 * 180.02562 * 10 9 8 14 14 H 1.08005 * 119.99978 * 0.02562 * 13 10 9 15 15 C 1.37871 * 119.99882 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 H 1.08994 * 109.47534 * 270.02495 * 1 2 3 22 22 H 1.09000 * 109.46843 * 30.02375 * 1 2 3 23 23 H 1.08999 * 109.47059 * 150.02431 * 1 2 3 24 24 H 1.08003 * 125.95803 * 180.02562 * 5 3 2 25 25 H 1.08997 * 109.47329 * 330.00854 * 8 7 2 26 26 H 1.09002 * 109.47606 * 209.99986 * 8 7 2 27 27 H 0.96998 * 120.00112 * 345.00761 * 9 8 7 28 28 H 0.96701 * 114.00262 * 299.99379 * 11 10 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1274 0.0000 4 1 2.0258 2.0571 0.0003 5 6 3.5637 0.6621 0.0006 6 7 3.5140 -0.6453 0.0062 7 6 2.2444 -1.0494 0.0005 8 6 1.7819 -2.4837 0.0017 9 7 1.6316 -2.9494 -1.3793 10 16 1.4993 -4.5693 -1.6970 11 8 2.7460 -5.2871 -1.2004 12 8 0.3564 -5.0904 -1.0327 13 6 1.3330 -4.8154 -3.4338 14 1 1.3304 -3.9667 -4.1017 15 6 1.2060 -6.0915 -3.9401 16 7 1.2086 -7.1250 -3.1267 17 14 1.0290 -6.3524 -5.7813 18 1 0.9104 -7.8050 -6.0662 19 1 -0.1872 -5.6516 -6.2659 20 1 2.2237 -5.8083 -6.4755 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 4.4613 1.2627 0.0011 25 1 0.8235 -2.5560 0.5157 26 1 2.5176 -3.1023 0.5157 27 1 1.6097 -2.3090 -2.1074 28 1 3.5660 -4.9817 -1.6121 29 1 1.3001 -6.9894 -2.1706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725662359.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:37 Heat of formation + Delta-G solvation = 72.953760 kcal Electronic energy + Delta-G solvation = -16441.133691 eV Core-core repulsion = 13531.543275 eV Total energy + Delta-G solvation = -2909.590416 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.00341 -36.52589 -34.59216 -34.23887 -33.34640 -32.95717 -30.78190 -26.84826 -25.80433 -24.91602 -21.73578 -19.90633 -19.58961 -18.91627 -17.73095 -17.06700 -15.23360 -15.07759 -15.02154 -14.64776 -14.22481 -13.98589 -13.87057 -13.12348 -12.68779 -12.45392 -12.32563 -12.19942 -11.83121 -11.62060 -11.22303 -10.82038 -10.44889 -10.34717 -9.53160 -9.37454 -9.17589 -8.97647 -8.72040 -8.13819 -7.34017 -5.55573 -3.20544 0.67502 2.64260 3.08520 3.13666 3.33433 3.53400 3.91527 4.12651 4.55161 4.88677 4.94226 5.25422 5.40275 5.59607 5.69919 5.82017 5.92112 6.09930 6.31828 6.71068 6.82413 7.25028 7.39629 7.67352 7.90986 8.16541 8.26184 8.45865 8.52277 9.23138 10.03791 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037364 B = 0.006175 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.202118 B = 4533.575201 C = 4652.934274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.414 5.414 3 N -0.549 5.549 4 H 0.420 0.580 5 C 0.174 3.826 6 N -0.470 5.470 7 C 0.074 3.926 8 C 0.213 3.787 9 N -1.059 6.059 10 S 2.224 3.776 11 O -0.891 6.891 12 O -0.978 6.978 13 C -1.039 5.039 14 H 0.104 0.896 15 C 0.079 3.921 16 N -0.843 5.843 17 Si 1.071 2.929 18 H -0.272 1.272 19 H -0.275 1.275 20 H -0.275 1.275 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.199 0.801 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.368 0.632 28 H 0.434 0.566 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 13.857 1.945 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.230 5.230 3 N -0.287 5.287 4 H 0.263 0.737 5 C -0.117 4.117 6 N -0.193 5.193 7 C -0.181 4.181 8 C 0.091 3.909 9 N -0.815 5.815 10 S 2.366 3.634 11 O -0.742 6.742 12 O -0.965 6.965 13 C -1.173 5.173 14 H 0.122 0.878 15 C -0.140 4.140 16 N -0.473 5.473 17 Si 0.894 3.106 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.200 1.200 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.100 0.900 24 H 0.215 0.785 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.201 0.799 28 H 0.296 0.704 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.428 10.032 1.658 10.454 hybrid contribution -0.595 2.617 -0.217 2.693 sum 1.833 12.649 1.441 12.862 Atomic orbital electron populations 1.21422 0.75991 1.02846 1.01403 1.44436 1.01713 0.97357 1.79519 1.44170 1.01911 1.01280 1.81315 0.73742 1.23784 0.86628 0.91268 1.10049 1.69809 1.20593 1.10321 1.18542 1.20944 0.84760 0.88924 1.23462 1.19566 0.97580 0.85807 0.87938 1.62976 1.90420 1.18247 1.09807 1.32550 0.75766 0.77593 0.77495 1.85622 1.33683 1.78511 1.76401 1.93082 1.47104 1.80572 1.75774 1.31384 1.65961 1.02295 1.17691 0.87791 1.26184 0.88545 0.90599 1.08673 1.70861 1.36490 1.33480 1.06461 0.83545 0.77828 0.77245 0.72030 1.19696 1.20084 1.19996 0.93467 0.92375 0.90049 0.78460 0.93359 0.91892 0.79916 0.70445 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 76. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 1.60 11.03 59.85 0.66 2.26 15 2 N -0.41 -6.44 3.92 -65.38 -0.26 -6.70 15 3 N -0.55 -7.06 7.34 29.53 0.22 -6.85 15 4 H 0.42 3.78 8.96 -182.34 -1.63 2.15 15 5 C 0.17 2.41 13.13 -90.66 -1.19 1.22 15 6 N -0.47 -8.45 11.19 -11.97 -0.13 -8.58 15 7 C 0.07 1.34 7.30 -156.85 -1.14 0.20 15 8 C 0.21 4.10 6.33 -5.19 -0.03 4.07 15 9 N -1.06 -21.13 6.07 -11.65 -0.07 -21.20 15 10 S 2.22 53.48 4.29 -107.50 -0.46 53.02 15 11 O -0.89 -19.86 12.93 -58.38 -0.75 -20.61 15 12 O -0.98 -28.92 17.46 -58.38 -1.02 -29.94 15 13 C -1.04 -26.73 9.99 30.60 0.31 -26.43 15 14 H 0.10 2.49 7.81 -52.48 -0.41 2.08 15 15 C 0.08 2.12 5.46 -17.82 -0.10 2.03 15 16 N -0.84 -24.79 13.66 55.43 0.76 -24.04 15 17 Si 1.07 22.90 29.90 -169.99 -5.08 17.82 15 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.08 1.12 7.55 -51.93 -0.39 0.73 15 24 H 0.20 1.85 8.06 -52.48 -0.42 1.42 15 25 H 0.05 0.93 7.59 -51.93 -0.39 0.53 15 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 15 27 H 0.37 6.95 8.65 -34.47 -0.30 6.65 15 28 H 0.43 7.25 9.03 67.38 0.61 7.86 15 29 H 0.28 8.57 6.08 -40.82 -0.25 8.32 15 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -36.98 269.49 -7.50 -44.48 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -3.26 Total: 15.19 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -1.50 Total: -16.65 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: 0.51 Total: -67.36 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -1.77 Total: -50.55 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.08 Total: 17.82 kcal Atomic # 16 Polarization: 53.48 SS G_CDS: -0.46 Total: 53.02 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -36.98 -7.50 -44.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662359.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.435 kcal (2) G-P(sol) polarization free energy of solvation -36.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds