Wall clock time and date at job start Mon Mar 30 2020 04:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40443 * 126.60516 * 2 1 4 4 H 0.96995 * 126.82414 * 0.02562 * 3 2 1 5 5 C 1.34431 * 106.35149 * 179.97438 * 3 2 1 6 6 N 1.30829 * 108.08051 * 359.75594 * 5 3 2 7 7 C 1.30712 * 126.60054 * 179.97438 * 2 1 3 8 8 C 1.50701 * 125.52779 * 359.97438 * 7 2 1 9 9 N 1.46506 * 109.46827 * 90.00260 * 8 7 2 10 10 S 1.65604 * 119.99974 * 164.99901 * 9 8 7 11 11 O 1.52196 * 109.46984 * 300.00337 * 10 9 8 12 12 O 1.42097 * 109.46743 * 60.00202 * 10 9 8 13 13 C 1.76199 * 109.47140 * 180.02562 * 10 9 8 14 14 H 1.08005 * 119.99978 * 0.02562 * 13 10 9 15 15 C 1.37871 * 119.99882 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 H 1.08994 * 109.47534 * 270.02495 * 1 2 3 22 22 H 1.09000 * 109.46843 * 30.02375 * 1 2 3 23 23 H 1.08999 * 109.47059 * 150.02431 * 1 2 3 24 24 H 1.08003 * 125.95803 * 180.02562 * 5 3 2 25 25 H 1.08997 * 109.47329 * 330.00854 * 8 7 2 26 26 H 1.09002 * 109.47606 * 209.99986 * 8 7 2 27 27 H 0.96998 * 120.00112 * 345.00761 * 9 8 7 28 28 H 0.96701 * 114.00262 * 299.99379 * 11 10 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1274 0.0000 4 1 2.0258 2.0571 0.0003 5 6 3.5637 0.6621 0.0006 6 7 3.5140 -0.6453 0.0062 7 6 2.2444 -1.0494 0.0005 8 6 1.7819 -2.4837 0.0017 9 7 1.6316 -2.9494 -1.3793 10 16 1.4993 -4.5693 -1.6970 11 8 2.7460 -5.2871 -1.2004 12 8 0.3564 -5.0904 -1.0327 13 6 1.3330 -4.8154 -3.4338 14 1 1.3304 -3.9667 -4.1017 15 6 1.2060 -6.0915 -3.9401 16 7 1.2086 -7.1250 -3.1267 17 14 1.0290 -6.3524 -5.7813 18 1 0.9104 -7.8050 -6.0662 19 1 -0.1872 -5.6516 -6.2659 20 1 2.2237 -5.8083 -6.4755 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 4.4613 1.2627 0.0011 25 1 0.8235 -2.5560 0.5157 26 1 2.5176 -3.1023 0.5157 27 1 1.6097 -2.3090 -2.1074 28 1 3.5660 -4.9817 -1.6121 29 1 1.3001 -6.9894 -2.1706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662359.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:37 Heat of formation + Delta-G solvation = 35.242306 kcal Electronic energy + Delta-G solvation = -16442.768982 eV Core-core repulsion = 13531.543275 eV Total energy + Delta-G solvation = -2911.225707 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.48339 -37.02021 -35.82869 -35.56160 -34.98377 -34.67716 -32.55890 -28.55199 -27.15963 -26.40206 -23.69780 -21.77382 -20.48965 -20.03937 -19.53631 -18.01995 -17.01042 -16.87454 -16.39908 -15.83867 -15.73540 -15.64277 -15.19473 -14.38191 -14.14414 -13.97700 -13.78951 -13.52150 -13.15057 -12.79102 -12.62436 -12.10425 -12.03336 -11.56863 -11.38527 -11.14617 -10.96472 -10.87249 -9.97940 -8.99268 -8.96841 -6.95114 -4.79304 -0.43732 0.55395 1.36941 1.47514 1.68959 1.84752 2.45365 2.80886 3.04719 3.14020 3.46704 3.85727 4.02467 4.09872 4.38734 4.40219 4.69975 4.71015 4.93210 4.98345 5.18232 5.67776 5.81453 5.99135 6.19160 6.47535 6.76295 7.10528 7.18632 7.39455 8.37792 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037364 B = 0.006175 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.202118 B = 4533.575201 C = 4652.934274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.368 5.368 3 N -0.479 5.479 4 H 0.468 0.532 5 C 0.339 3.661 6 N -0.546 5.546 7 C 0.258 3.742 8 C 0.182 3.818 9 N -1.050 6.050 10 S 2.023 3.977 11 O -0.933 6.933 12 O -1.098 7.098 13 C -1.054 5.054 14 H 0.078 0.922 15 C 0.004 3.996 16 N -0.920 5.920 17 Si 1.101 2.899 18 H -0.279 1.279 19 H -0.269 1.269 20 H -0.247 1.247 21 H 0.099 0.901 22 H 0.120 0.880 23 H 0.078 0.922 24 H 0.296 0.704 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.340 0.660 28 H 0.420 0.580 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 29.955 6.782 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.169 5.169 3 N -0.210 5.210 4 H 0.320 0.680 5 C 0.044 3.956 6 N -0.273 5.273 7 C -0.011 4.011 8 C 0.054 3.946 9 N -0.800 5.800 10 S 2.151 3.849 11 O -0.783 6.783 12 O -1.086 7.086 13 C -1.182 5.182 14 H 0.096 0.904 15 C -0.199 4.199 16 N -0.556 5.556 17 Si 0.918 3.082 18 H -0.204 1.204 19 H -0.194 1.194 20 H -0.171 1.171 21 H 0.118 0.882 22 H 0.138 0.862 23 H 0.097 0.903 24 H 0.311 0.689 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.168 0.832 28 H 0.280 0.720 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.358 26.493 6.428 27.783 hybrid contribution -1.066 1.657 0.046 1.970 sum 4.292 28.150 6.475 29.202 Atomic orbital electron populations 1.22416 0.71054 1.06129 1.05584 1.46506 1.05724 0.98624 1.66031 1.45670 1.02319 1.03520 1.69528 0.67982 1.26795 0.88654 0.90467 0.89729 1.70624 1.18970 1.12584 1.25084 1.23261 0.85980 0.90712 1.01148 1.20263 0.97218 0.83995 0.93133 1.65426 1.89460 1.20110 1.04979 1.58109 0.74649 0.77680 0.74488 1.85556 1.34500 1.81803 1.76420 1.92523 1.55562 1.83174 1.77338 1.32847 1.60128 0.99319 1.25892 0.90373 1.27609 0.88789 0.92099 1.11443 1.70939 1.45208 1.34374 1.05094 0.83279 0.78843 0.76594 0.69435 1.20439 1.19406 1.17119 0.88228 0.86181 0.90299 0.68928 0.94251 0.92697 0.83167 0.72013 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 11.03 127.77 1.41 2.41 15 2 N -0.37 -5.51 3.92 -360.76 -1.41 -6.92 15 3 N -0.48 -1.95 7.34 -60.49 -0.44 -2.39 15 4 H 0.47 -2.63 8.96 -213.10 -1.91 -4.54 15 5 C 0.34 2.03 13.13 180.36 2.37 4.40 15 6 N -0.55 -11.33 11.19 -191.80 -2.15 -13.47 15 7 C 0.26 6.48 7.30 138.63 1.01 7.50 15 8 C 0.18 6.86 6.33 85.63 0.54 7.40 15 9 N -1.05 -47.95 6.07 -190.78 -1.16 -49.11 15 10 S 2.02 125.84 4.29 -56.49 -0.24 125.60 15 11 O -0.93 -56.13 12.93 -126.85 -1.64 -57.77 15 12 O -1.10 -83.16 17.46 -126.85 -2.22 -85.38 15 13 C -1.05 -69.62 9.99 67.73 0.68 -68.95 15 14 H 0.08 4.79 7.81 -2.91 -0.02 4.77 15 15 C 0.00 0.28 5.46 84.65 0.46 0.75 15 16 N -0.92 -68.58 13.66 21.45 0.29 -68.29 15 17 Si 1.10 56.40 29.90 68.60 2.05 58.45 15 18 H -0.28 -14.09 7.11 99.48 0.71 -13.39 15 19 H -0.27 -12.89 7.11 99.48 0.71 -12.18 15 20 H -0.25 -11.12 7.11 99.48 0.71 -10.41 15 21 H 0.10 0.79 8.14 -2.39 -0.02 0.77 15 22 H 0.12 0.43 8.14 -2.39 -0.02 0.41 15 23 H 0.08 1.51 7.55 -2.39 -0.02 1.49 15 24 H 0.30 -2.17 8.06 -2.91 -0.02 -2.20 15 25 H 0.04 1.51 7.59 -2.39 -0.02 1.49 15 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.34 14.18 8.65 -96.75 -0.84 13.34 15 28 H 0.42 20.55 9.03 -87.93 -0.79 19.75 15 29 H 0.25 20.04 6.08 -92.71 -0.56 19.48 15 Total: -1.00 -122.20 269.49 -2.57 -124.77 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -2.12 Total: 21.01 kcal Atomic # 6 Polarization: -52.96 SS G_CDS: 6.47 Total: -46.49 kcal Atomic # 7 Polarization: -135.32 SS G_CDS: -4.87 Total: -140.19 kcal Atomic # 8 Polarization: -139.30 SS G_CDS: -3.86 Total: -143.15 kcal Atomic # 14 Polarization: 56.40 SS G_CDS: 2.05 Total: 58.45 kcal Atomic # 16 Polarization: 125.84 SS G_CDS: -0.24 Total: 125.60 kcal Total: -122.20 -2.57 -124.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662359.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.011 kcal (2) G-P(sol) polarization free energy of solvation -122.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -124.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds