Wall clock time and date at job start Mon Mar 30 2020 04:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46509 * 109.46933 * 2 1 4 4 C 1.33773 * 125.55629 * 125.00015 * 3 2 1 5 5 C 1.35340 * 106.49630 * 180.02562 * 4 3 2 6 6 S 1.76206 * 126.91151 * 179.97438 * 5 4 3 7 7 O 1.52206 * 109.46874 * 270.00059 * 6 5 4 8 8 O 1.42095 * 109.47200 * 29.99943 * 6 5 4 9 9 N 1.65595 * 109.47194 * 150.00416 * 6 5 4 10 10 C 1.36933 * 120.00221 * 180.02562 * 9 6 5 11 11 H 1.07999 * 119.99953 * 359.97438 * 10 9 6 12 12 C 1.38813 * 120.00331 * 179.97438 * 10 9 6 13 13 N 1.31617 * 120.00366 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99788 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47157 * 90.00306 * 14 12 10 16 16 H 1.48502 * 109.47022 * 209.99908 * 14 12 10 17 17 H 1.48503 * 109.47323 * 330.00305 * 14 12 10 18 18 N 1.35315 * 106.17930 * 0.22742 * 5 4 3 19 19 H 0.96994 * 125.87186 * 179.76649 * 18 5 4 20 20 N 1.28627 * 125.55698 * 305.04087 * 3 2 1 21 21 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46958 * 300.00142 * 1 2 3 23 23 H 1.09002 * 109.46795 * 59.99742 * 1 2 3 24 24 H 1.08993 * 109.47152 * 240.00616 * 2 1 3 25 25 H 1.08994 * 109.47236 * 119.99791 * 2 1 3 26 26 H 1.07999 * 126.74758 * 0.02562 * 4 3 2 27 27 H 0.96691 * 114.00102 * 299.99717 * 7 6 5 28 28 H 0.97006 * 120.00016 * 359.97438 * 9 6 5 29 29 H 0.96993 * 120.00150 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8661 1.9067 0.8915 5 6 3.0531 3.1974 0.5298 6 16 4.0723 4.3859 1.3380 7 8 3.2571 5.1193 2.3937 8 8 5.1675 3.7269 1.9587 9 7 4.6407 5.4732 0.2258 10 6 5.4598 6.4956 0.6244 11 1 5.7348 6.5931 1.6642 12 6 5.9367 7.4067 -0.3080 13 7 6.7244 8.3891 0.0750 14 14 5.4616 7.2377 -2.1066 15 1 4.2157 8.0039 -2.3636 16 1 6.5547 7.7697 -2.9594 17 1 5.2366 5.8051 -2.4267 18 7 2.2953 3.3931 -0.5741 19 1 2.2153 4.2237 -1.0686 20 7 1.7012 2.2868 -0.8568 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.3134 1.4004 1.7341 27 1 2.4916 5.5929 2.0406 28 1 4.3940 5.3854 -0.7082 29 1 7.0579 9.0255 -0.5765 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:23 Heat of formation + Delta-G solvation = 43.423693 kcal Electronic energy + Delta-G solvation = -16448.067813 eV Core-core repulsion = 13537.196877 eV Total energy + Delta-G solvation = -2910.870936 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -45.21547 -37.45386 -36.42475 -35.50636 -35.17085 -32.89288 -32.42233 -32.22144 -26.73352 -25.30471 -24.28771 -22.85598 -20.54452 -19.94975 -19.18848 -18.27410 -17.77443 -17.45839 -16.40720 -16.03369 -15.52066 -15.41568 -14.95067 -14.64351 -14.26406 -13.87949 -13.77421 -13.35070 -13.09008 -12.78774 -12.42349 -12.16589 -11.86791 -11.79960 -11.72688 -11.17353 -11.08153 -10.81399 -10.61461 -9.58488 -7.90453 -5.57367 -5.30731 -0.24138 0.80201 0.83162 1.41593 1.54850 1.62466 1.77421 2.64387 3.13115 3.32154 3.51827 3.63602 3.83839 3.89886 4.05336 4.30142 4.31566 4.73934 4.81261 4.90968 5.17133 5.21945 5.58339 5.75147 6.20154 6.37721 6.94498 7.13967 7.65477 8.14590 9.34020 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.035699 B = 0.007076 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.148786 B = 3956.183000 C = 4471.737245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.086 3.914 3 N -0.207 5.207 4 C -0.007 4.007 5 C -0.332 4.332 6 S 1.819 4.181 7 O -0.947 6.947 8 O -1.078 7.078 9 N -0.962 5.962 10 C -0.251 4.251 11 H 0.018 0.982 12 C -0.084 4.084 13 N -1.001 6.001 14 Si 0.978 3.022 15 H -0.252 1.252 16 H -0.306 1.306 17 H -0.235 1.235 18 N -0.280 5.280 19 H 0.485 0.515 20 N -0.049 5.049 21 H 0.115 0.885 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.136 0.864 25 H 0.148 0.852 26 H 0.221 0.779 27 H 0.413 0.587 28 H 0.360 0.640 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.061 -23.160 -8.540 33.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.030 4.030 3 N -0.010 5.010 4 C -0.157 4.157 5 C -0.523 4.523 6 S 1.879 4.121 7 O -0.798 6.798 8 O -1.065 7.065 9 N -0.707 5.707 10 C -0.386 4.386 11 H 0.036 0.964 12 C -0.274 4.274 13 N -0.652 5.652 14 Si 0.801 3.199 15 H -0.177 1.177 16 H -0.233 1.233 17 H -0.159 1.159 18 N -0.012 5.012 19 H 0.340 0.660 20 N -0.025 5.025 21 H 0.133 0.867 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.153 0.847 25 H 0.166 0.834 26 H 0.237 0.763 27 H 0.273 0.727 28 H 0.188 0.812 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.165 -23.867 -8.234 34.264 hybrid contribution 1.186 1.081 -0.206 1.618 sum -21.979 -22.787 -8.440 32.765 Atomic orbital electron populations 1.22185 0.91037 1.05980 1.03524 1.23230 0.98160 0.72151 1.09507 1.48155 1.25721 1.12273 1.14900 1.24057 0.97068 0.93549 1.01014 1.42571 1.07848 1.12915 0.88971 1.82196 0.82934 0.71801 0.75154 1.85408 1.49058 1.74267 1.71084 1.92391 1.61403 1.74829 1.77868 1.53143 1.59781 1.38697 1.19048 1.19248 1.22143 1.04382 0.92811 0.96435 1.26426 0.99197 0.96955 1.04834 1.70060 1.40254 1.19239 1.35678 0.85097 0.77958 0.79752 0.77088 1.17660 1.23322 1.15880 1.44781 1.26543 1.10568 1.19348 0.66040 1.78044 1.19294 0.91113 1.14031 0.86673 0.92066 0.91232 0.84656 0.83369 0.76259 0.72749 0.81197 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 120. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.03 10.03 71.98 0.72 0.75 15 2 C 0.09 0.07 7.15 86.38 0.62 0.69 15 3 N -0.21 -2.34 3.39 -348.98 -1.18 -3.52 15 4 C -0.01 -0.15 11.41 83.73 0.95 0.80 15 5 C -0.33 -9.09 7.52 83.49 0.63 -8.46 15 6 S 1.82 86.37 5.45 -56.49 -0.31 86.06 15 7 O -0.95 -45.25 13.56 -126.85 -1.72 -46.97 15 8 O -1.08 -68.56 18.12 -126.85 -2.30 -70.86 15 9 N -0.96 -50.43 5.62 -54.27 -0.30 -50.74 15 10 C -0.25 -16.95 10.42 84.03 0.88 -16.08 15 11 H 0.02 1.40 8.05 -2.91 -0.02 1.37 15 12 C -0.08 -5.50 5.50 84.86 0.47 -5.03 15 13 N -1.00 -71.69 13.97 21.65 0.30 -71.39 15 14 Si 0.98 46.85 27.73 68.60 1.90 48.75 15 15 H -0.25 -10.73 7.11 99.48 0.71 -10.02 15 16 H -0.31 -15.10 7.11 99.48 0.71 -14.40 15 17 H -0.24 -9.53 6.52 99.48 0.65 -8.88 15 18 N -0.28 -4.85 6.98 -55.32 -0.39 -5.24 15 19 H 0.49 5.78 8.96 -219.96 -1.97 3.80 15 20 N -0.05 -0.64 12.88 37.02 0.48 -0.16 15 21 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 15 22 H 0.06 0.15 8.14 -2.39 -0.02 0.13 15 23 H 0.07 0.12 8.11 -2.39 -0.02 0.10 15 24 H 0.14 -0.39 8.14 -2.39 -0.02 -0.41 15 25 H 0.15 -0.54 8.05 -2.39 -0.02 -0.56 15 26 H 0.22 3.93 8.06 -2.91 -0.02 3.90 15 27 H 0.41 14.41 9.03 -87.94 -0.79 13.62 15 28 H 0.36 15.57 5.89 -96.74 -0.57 15.00 15 29 H 0.25 16.99 8.31 -92.71 -0.77 16.21 15 Total: -1.00 -120.61 269.36 -1.44 -122.06 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -2.19 Total: 19.33 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.27 Total: -27.32 kcal Atomic # 7 Polarization: -129.96 SS G_CDS: -1.09 Total: -131.05 kcal Atomic # 8 Polarization: -113.81 SS G_CDS: -4.02 Total: -117.83 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.90 Total: 48.75 kcal Atomic # 16 Polarization: 86.37 SS G_CDS: -0.31 Total: 86.06 kcal Total: -120.61 -1.44 -122.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.480 kcal (2) G-P(sol) polarization free energy of solvation -120.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -122.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds