Wall clock time and date at job start Mon Mar 30 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33768 * 125.55718 * 2 1 4 4 C 1.35347 * 106.49638 * 180.15661 * 3 2 1 5 5 C 1.50701 * 126.91075 * 179.91044 * 4 3 2 6 6 N 1.46506 * 109.46827 * 264.70318 * 5 4 3 7 7 S 1.65604 * 119.99974 * 164.99901 * 6 5 4 8 8 O 1.52196 * 109.46984 * 300.00337 * 7 6 5 9 9 O 1.42097 * 109.46743 * 60.00202 * 7 6 5 10 10 C 1.76199 * 109.47140 * 180.02562 * 7 6 5 11 11 H 1.08005 * 119.99978 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99882 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 N 1.35304 * 106.17714 * 359.64280 * 4 3 2 19 19 H 0.97007 * 125.87090 * 180.20976 * 18 4 3 20 20 N 1.28633 * 125.55554 * 179.75371 * 2 1 3 21 21 H 1.09001 * 109.47454 * 270.26621 * 1 2 3 22 22 H 1.08996 * 109.47174 * 30.27360 * 1 2 3 23 23 H 1.09004 * 109.46701 * 150.26963 * 1 2 3 24 24 H 1.08005 * 126.75019 * 0.02562 * 3 2 1 25 25 H 1.08997 * 109.47329 * 144.70911 * 5 4 3 26 26 H 1.09002 * 109.47606 * 24.70043 * 5 4 3 27 27 H 0.96998 * 120.00112 * 345.00761 * 6 5 4 28 28 H 0.96701 * 114.00262 * 299.99379 * 8 7 6 29 29 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2429 1.0883 0.0000 4 6 3.5222 0.6462 -0.0035 5 6 4.7711 1.4896 -0.0069 6 7 5.2434 1.6573 -1.3835 7 16 6.3632 2.8246 -1.7384 8 8 5.8041 4.1920 -1.3722 9 8 7.5501 2.5837 -0.9952 10 6 6.7296 2.7826 -3.4613 11 1 6.2395 2.0629 -4.1003 12 6 7.6419 3.6686 -3.9938 13 7 8.2391 4.5447 -3.2157 14 14 8.0309 3.6236 -5.8203 15 1 9.0349 4.6705 -6.1385 16 1 8.5759 2.2893 -6.1777 17 1 6.7905 3.8759 -6.5969 18 7 3.4541 -0.7051 0.0026 19 1 4.2106 -1.3123 0.0048 20 7 2.2130 -1.0465 0.0045 21 1 -0.3634 0.0048 1.0276 22 1 -0.3633 0.8875 -0.5181 23 1 -0.3633 -0.8924 -0.5097 24 1 1.9147 2.1172 0.0004 25 1 5.5432 0.9977 0.5847 26 1 4.5510 2.4667 0.4233 27 1 4.9001 1.0847 -2.0872 28 1 4.9916 4.4236 -1.8428 29 1 8.0373 4.5678 -2.2672 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725662371.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:05 Heat of formation + Delta-G solvation = 90.947664 kcal Electronic energy + Delta-G solvation = -16232.155956 eV Core-core repulsion = 13323.345814 eV Total energy + Delta-G solvation = -2908.810142 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.073 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.74692 -35.84621 -35.24573 -33.96804 -33.54724 -32.84150 -29.92842 -28.52959 -25.43373 -24.72039 -22.13245 -21.20057 -18.97694 -18.63064 -17.70632 -16.67634 -16.14605 -15.72684 -14.78649 -14.33782 -14.06465 -13.79066 -13.73802 -13.40552 -13.17469 -12.70484 -12.36734 -12.03104 -11.56198 -11.25346 -11.01011 -10.86223 -10.34948 -10.26483 -10.18426 -9.80148 -9.04788 -8.66178 -8.23161 -7.68386 -6.96626 -5.08365 -2.83743 0.84252 2.29419 2.59345 3.25026 3.30383 3.49308 3.93709 4.20430 4.37518 4.57311 4.84269 4.91570 5.10254 5.31995 5.37605 5.79707 5.84156 6.16347 6.29361 6.42232 6.74286 7.09785 7.21287 7.68243 8.08702 8.13805 8.29582 8.67527 8.92219 8.94780 10.41837 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.039315 B = 0.005653 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.031461 B = 4952.256504 C = 5193.752722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.229 5.229 3 C -0.016 4.016 4 C -0.085 4.085 5 C 0.190 3.810 6 N -1.059 6.059 7 S 2.154 3.846 8 O -0.907 6.907 9 O -1.000 7.000 10 C -1.040 5.040 11 H 0.090 0.910 12 C 0.077 3.923 13 N -0.860 5.860 14 Si 1.062 2.938 15 H -0.276 1.276 16 H -0.279 1.279 17 H -0.279 1.279 18 N -0.465 5.465 19 H 0.442 0.558 20 N -0.218 5.218 21 H 0.087 0.913 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.181 0.819 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.353 0.647 28 H 0.419 0.581 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.324 -5.957 4.078 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.016 5.016 3 C -0.182 4.182 4 C -0.223 4.223 5 C 0.065 3.935 6 N -0.813 5.813 7 S 2.280 3.720 8 O -0.753 6.753 9 O -0.986 6.986 10 C -1.174 5.174 11 H 0.108 0.892 12 C -0.140 4.140 13 N -0.491 5.491 14 Si 0.886 3.114 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.204 1.204 18 N -0.212 5.212 19 H 0.287 0.713 20 N -0.194 5.194 21 H 0.105 0.895 22 H 0.116 0.884 23 H 0.115 0.885 24 H 0.198 0.802 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.183 0.817 28 H 0.279 0.721 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.491 -5.262 3.850 17.734 hybrid contribution -0.313 -0.599 -0.146 0.691 sum -16.804 -5.862 3.704 18.178 Atomic orbital electron populations 1.22170 0.73341 1.05553 1.04548 1.45608 1.07999 1.05213 1.42771 1.22172 0.89703 0.93454 1.12848 1.20715 0.95621 0.84274 1.21681 1.19803 0.88151 0.94801 0.90763 1.64235 1.58418 1.49647 1.09046 1.41617 0.81199 0.72184 0.76977 1.85649 1.49229 1.65467 1.74994 1.92913 1.52805 1.80190 1.72708 1.31733 1.35731 1.28535 1.21382 0.89159 1.25999 0.90143 0.90346 1.07474 1.70820 1.37992 1.32424 1.07913 0.83684 0.77059 0.77108 0.73538 1.20091 1.20499 1.20432 1.42274 1.03809 1.05451 1.69685 0.71348 1.77807 0.90064 1.06539 1.44952 0.89453 0.88380 0.88509 0.80228 0.94037 0.92576 0.81651 0.72110 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 67. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.35 59.85 0.68 1.12 15 2 N -0.23 -2.50 3.69 -68.46 -0.25 -2.75 15 3 C -0.02 -0.18 11.45 -17.74 -0.20 -0.39 15 4 C -0.08 -1.26 6.70 -82.09 -0.55 -1.81 15 5 C 0.19 3.36 6.88 -5.19 -0.04 3.32 15 6 N -1.06 -21.30 6.07 -11.65 -0.07 -21.37 15 7 S 2.15 55.56 4.29 -107.50 -0.46 55.10 15 8 O -0.91 -21.44 12.93 -58.38 -0.75 -22.20 15 9 O -1.00 -32.13 17.46 -58.38 -1.02 -33.15 15 10 C -1.04 -29.18 9.99 30.60 0.31 -28.88 15 11 H 0.09 2.38 7.81 -52.48 -0.41 1.97 15 12 C 0.08 2.25 5.46 -17.82 -0.10 2.16 15 13 N -0.86 -27.29 13.66 55.43 0.76 -26.53 15 14 Si 1.06 24.81 29.90 -169.99 -5.08 19.72 15 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 18 N -0.47 -6.65 6.98 33.54 0.23 -6.41 15 19 H 0.44 5.69 8.96 -190.39 -1.71 3.99 15 20 N -0.22 -2.98 13.15 60.35 0.79 -2.18 15 21 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 15 22 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 15 23 H 0.10 0.44 8.14 -51.93 -0.42 0.01 15 24 H 0.18 1.54 8.06 -52.48 -0.42 1.12 15 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 27 H 0.35 6.69 8.65 -34.47 -0.30 6.39 15 28 H 0.42 7.40 9.03 67.38 0.61 8.01 15 29 H 0.28 9.24 6.08 -40.82 -0.25 8.99 15 LS Contribution 270.58 15.07 4.08 4.08 Total: -1.00 -41.41 270.58 -5.07 -46.48 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -3.39 Total: 13.68 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 0.10 Total: -24.47 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 1.46 Total: -59.24 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -1.77 Total: -55.35 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.72 kcal Atomic # 16 Polarization: 55.56 SS G_CDS: -0.46 Total: 55.10 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -41.41 -5.07 -46.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662371.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.427 kcal (2) G-P(sol) polarization free energy of solvation -41.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds