Wall clock time and date at job start Mon Mar 30 2020 03:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46966 * 2 1 4 4 N 1.27946 * 119.99970 * 125.00296 * 3 2 1 5 5 Si 1.86801 * 120.00355 * 305.00280 * 3 2 1 6 6 H 1.48503 * 109.46623 * 0.02562 * 5 3 2 7 7 H 1.48501 * 109.46777 * 119.99647 * 5 3 2 8 8 H 1.48495 * 109.47143 * 240.00081 * 5 3 2 9 9 S 1.81400 * 109.47332 * 120.00367 * 2 1 3 10 10 O 1.52202 * 108.33128 * 177.79064 * 9 2 1 11 11 O 1.42105 * 114.64950 * 298.89190 * 9 2 1 12 12 N 1.65602 * 108.33355 * 59.99945 * 9 2 1 13 13 C 1.39275 * 119.99832 * 179.97438 * 12 9 2 14 14 C 1.35860 * 126.67608 * 224.70823 * 13 12 9 15 15 N 1.33310 * 108.85558 * 179.86727 * 14 13 12 16 16 C 1.46494 * 125.00658 * 180.12434 * 15 14 13 17 17 N 1.28729 * 109.98080 * 0.41558 * 15 14 13 18 18 N 1.36256 * 126.67596 * 45.02869 * 13 12 9 19 19 H 0.97002 * 126.83866 * 359.97357 * 18 13 12 20 20 H 1.09001 * 109.46804 * 299.99119 * 1 2 3 21 21 H 1.08997 * 109.47507 * 59.99625 * 1 2 3 22 22 H 1.08996 * 109.46863 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46794 * 240.00324 * 2 1 3 24 24 H 0.96995 * 120.00209 * 180.02562 * 4 3 2 25 25 H 0.96703 * 113.99628 * 304.93377 * 10 9 2 26 26 H 0.96996 * 119.99427 * 0.02562 * 12 9 2 27 27 H 1.07996 * 125.56939 * 0.02719 * 14 13 12 28 28 H 1.09007 * 109.47371 * 270.30505 * 16 15 14 29 29 H 1.09000 * 109.47235 * 30.30667 * 16 15 14 30 30 H 1.08997 * 109.47036 * 150.30076 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.8448 1.8121 0.9076 5 14 1.4688 2.6108 -1.3251 6 1 0.5362 1.9169 -2.2493 7 1 0.7744 3.7617 -0.6939 8 1 2.6472 3.0997 -2.0850 9 16 2.1348 -0.8552 1.4811 10 8 3.6555 -0.8885 1.4272 11 8 1.7440 -0.2594 2.7106 12 7 1.5674 -2.4107 1.4525 13 6 1.8898 -3.2886 2.4846 14 6 2.2935 -4.5794 2.3556 15 7 2.5093 -5.0867 3.5694 16 6 2.9582 -6.4544 3.8409 17 7 2.2591 -4.1994 4.4678 18 7 1.8559 -3.0218 3.8203 19 1 1.6033 -2.1846 4.2400 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1678 2.7267 0.9079 25 1 4.0119 -1.2809 0.6185 26 1 1.0112 -2.7106 0.7166 27 1 2.4214 -5.1073 1.4222 28 1 2.0916 -7.1072 3.9462 29 1 3.5782 -6.8040 3.0154 30 1 3.5389 -6.4698 4.7632 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725662404.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:47 Heat of formation + Delta-G solvation = 100.217518 kcal Electronic energy + Delta-G solvation = -17109.408329 eV Core-core repulsion = 14187.344420 eV Total energy + Delta-G solvation = -2922.063910 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 249.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.29395 -37.29450 -36.68128 -36.49851 -35.10311 -34.49544 -32.30232 -30.75320 -30.33853 -24.67107 -24.37401 -23.40657 -20.49988 -19.86621 -19.70863 -18.40791 -17.89366 -17.77431 -17.34686 -17.06962 -15.86518 -15.60367 -15.20084 -14.83389 -14.65472 -14.52605 -14.04986 -13.98092 -13.75639 -13.17749 -12.78061 -12.43430 -12.15605 -11.98198 -11.82477 -11.61477 -11.50042 -10.92337 -10.82006 -10.09379 -9.48113 -9.10687 -5.48872 -0.75313 0.41535 0.75233 1.18459 1.28936 1.52592 1.70545 2.11310 2.20257 2.75943 2.99572 3.28708 3.37991 3.42701 3.59391 3.79754 3.94900 4.25961 4.44444 4.71611 4.93762 5.10141 5.16086 5.24389 5.55454 5.77913 5.84380 5.89759 5.90743 6.70388 6.95881 7.41825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.558 4.558 3 C 0.042 3.958 4 N -0.644 5.644 5 Si 0.892 3.108 6 H -0.233 1.233 7 H -0.250 1.250 8 H -0.252 1.252 9 S 1.829 4.171 10 O -0.896 6.896 11 O -0.970 6.970 12 N -0.928 5.928 13 C 0.363 3.637 14 C -0.096 4.096 15 N -0.163 5.163 16 C 0.060 3.940 17 N -0.084 5.084 18 N -0.434 5.434 19 H 0.471 0.529 20 H 0.049 0.951 21 H 0.041 0.959 22 H 0.061 0.939 23 H 0.107 0.893 24 H 0.330 0.670 25 H 0.408 0.592 26 H 0.396 0.604 27 H 0.213 0.787 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 -15.296 -1.733 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.649 4.649 3 C -0.207 4.207 4 N -0.257 5.257 5 Si 0.709 3.291 6 H -0.155 1.155 7 H -0.174 1.174 8 H -0.176 1.176 9 S 1.915 4.085 10 O -0.745 6.745 11 O -0.960 6.960 12 N -0.661 5.661 13 C 0.117 3.883 14 C -0.264 4.264 15 N 0.042 4.958 16 C -0.079 4.079 17 N -0.057 5.057 18 N -0.172 5.172 19 H 0.325 0.675 20 H 0.068 0.932 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.125 0.875 24 H 0.146 0.854 25 H 0.265 0.735 26 H 0.233 0.767 27 H 0.229 0.771 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.833 -14.360 0.691 14.401 hybrid contribution -0.195 1.713 -1.463 2.261 sum 0.637 -12.647 -0.771 12.686 Atomic orbital electron populations 1.21165 0.93472 1.01413 1.00995 1.29482 1.02305 1.01299 1.31770 1.29892 0.92412 1.01424 0.96963 1.68293 1.10819 1.22537 1.24082 0.86267 0.81907 0.79930 0.80988 1.15525 1.17353 1.17556 1.75524 0.71452 0.77903 0.83594 1.85208 1.57437 1.82644 1.49213 1.92613 1.77382 1.78471 1.47517 1.62539 1.54927 1.27583 1.21035 1.21181 0.95532 0.87942 0.83667 1.23386 1.15669 0.96314 0.91004 1.46243 1.30782 1.12206 1.06568 1.22981 1.03771 0.73959 1.07203 1.82212 1.29796 0.87725 1.05965 1.48129 1.50756 1.12743 1.05575 0.67521 0.93230 0.94004 0.91993 0.87538 0.85406 0.73505 0.76732 0.77053 0.86464 0.85868 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.31 8.76 37.16 0.33 0.01 16 2 C -0.56 -2.03 3.18 -27.88 -0.09 -2.11 16 3 C 0.04 0.25 5.33 -13.90 -0.07 0.18 16 4 N -0.64 -5.32 11.95 56.23 0.67 -4.64 16 5 Si 0.89 3.71 28.01 -169.99 -4.76 -1.05 16 6 H -0.23 -0.81 6.70 56.52 0.38 -0.44 16 7 H -0.25 -1.33 7.11 56.52 0.40 -0.93 16 8 H -0.25 -1.12 7.11 56.52 0.40 -0.72 16 9 S 1.83 8.63 3.75 -107.50 -0.40 8.22 16 10 O -0.90 -5.06 13.05 -58.55 -0.76 -5.83 16 11 O -0.97 -10.54 16.80 -58.55 -0.98 -11.53 16 12 N -0.93 1.09 5.95 31.25 0.19 1.27 16 13 C 0.36 -0.62 7.65 -152.54 -1.17 -1.79 16 14 C -0.10 0.57 11.32 -17.76 -0.20 0.37 16 15 N -0.16 0.96 3.66 -68.44 -0.25 0.71 16 16 C 0.06 -0.64 11.30 59.84 0.68 0.04 16 17 N -0.08 0.17 13.66 60.35 0.82 1.00 16 18 N -0.43 -0.01 7.38 31.24 0.23 0.22 16 19 H 0.47 0.82 7.93 -182.45 -1.45 -0.63 16 20 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 21 H 0.04 0.10 6.38 -51.93 -0.33 -0.23 16 22 H 0.06 -0.02 7.72 -51.93 -0.40 -0.42 16 23 H 0.11 0.02 8.14 -51.92 -0.42 -0.40 16 24 H 0.33 2.12 8.23 -40.82 -0.34 1.78 16 25 H 0.41 0.07 9.03 67.38 0.61 0.68 16 26 H 0.40 -1.81 8.53 -34.46 -0.29 -2.10 16 27 H 0.21 -2.19 8.06 -52.49 -0.42 -2.62 16 28 H 0.12 -1.42 8.14 -51.93 -0.42 -1.84 16 29 H 0.12 -1.61 8.13 -51.93 -0.42 -2.03 16 30 H 0.12 -1.25 8.14 -51.93 -0.42 -1.68 16 LS Contribution 269.25 15.07 4.06 4.06 Total: 0.00 -17.35 269.25 -5.28 -22.63 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: -3.56 Total: -11.75 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.53 Total: -3.31 kcal Atomic # 7 Polarization: -3.11 SS G_CDS: 1.66 Total: -1.44 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -1.75 Total: -17.35 kcal Atomic # 14 Polarization: 3.71 SS G_CDS: -4.76 Total: -1.05 kcal Atomic # 16 Polarization: 8.63 SS G_CDS: -0.40 Total: 8.22 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -17.35 -5.28 -22.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662404.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.845 kcal (2) G-P(sol) polarization free energy of solvation -17.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds