Wall clock time and date at job start Mon Mar 30 2020 03:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46966 * 2 1 4 4 N 1.27946 * 119.99970 * 125.00296 * 3 2 1 5 5 Si 1.86801 * 120.00355 * 305.00280 * 3 2 1 6 6 H 1.48503 * 109.46623 * 0.02562 * 5 3 2 7 7 H 1.48501 * 109.46777 * 119.99647 * 5 3 2 8 8 H 1.48495 * 109.47143 * 240.00081 * 5 3 2 9 9 S 1.81400 * 109.47332 * 120.00367 * 2 1 3 10 10 O 1.52202 * 108.33128 * 177.79064 * 9 2 1 11 11 O 1.42105 * 114.64950 * 298.89190 * 9 2 1 12 12 N 1.65602 * 108.33355 * 59.99945 * 9 2 1 13 13 C 1.39275 * 119.99832 * 179.97438 * 12 9 2 14 14 C 1.35860 * 126.67608 * 224.70823 * 13 12 9 15 15 N 1.33310 * 108.85558 * 179.86727 * 14 13 12 16 16 C 1.46494 * 125.00658 * 180.12434 * 15 14 13 17 17 N 1.28729 * 109.98080 * 0.41558 * 15 14 13 18 18 N 1.36256 * 126.67596 * 45.02869 * 13 12 9 19 19 H 0.97002 * 126.83866 * 359.97357 * 18 13 12 20 20 H 1.09001 * 109.46804 * 299.99119 * 1 2 3 21 21 H 1.08997 * 109.47507 * 59.99625 * 1 2 3 22 22 H 1.08996 * 109.46863 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46794 * 240.00324 * 2 1 3 24 24 H 0.96995 * 120.00209 * 180.02562 * 4 3 2 25 25 H 0.96703 * 113.99628 * 304.93377 * 10 9 2 26 26 H 0.96996 * 119.99427 * 0.02562 * 12 9 2 27 27 H 1.07996 * 125.56939 * 0.02719 * 14 13 12 28 28 H 1.09007 * 109.47371 * 270.30505 * 16 15 14 29 29 H 1.09000 * 109.47235 * 30.30667 * 16 15 14 30 30 H 1.08997 * 109.47036 * 150.30076 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.8448 1.8121 0.9076 5 14 1.4688 2.6108 -1.3251 6 1 0.5362 1.9169 -2.2493 7 1 0.7744 3.7617 -0.6939 8 1 2.6472 3.0997 -2.0850 9 16 2.1348 -0.8552 1.4811 10 8 3.6555 -0.8885 1.4272 11 8 1.7440 -0.2594 2.7106 12 7 1.5674 -2.4107 1.4525 13 6 1.8898 -3.2886 2.4846 14 6 2.2935 -4.5794 2.3556 15 7 2.5093 -5.0867 3.5694 16 6 2.9582 -6.4544 3.8409 17 7 2.2591 -4.1994 4.4678 18 7 1.8559 -3.0218 3.8203 19 1 1.6033 -2.1846 4.2400 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1678 2.7267 0.9079 25 1 4.0119 -1.2809 0.6185 26 1 1.0112 -2.7106 0.7166 27 1 2.4214 -5.1073 1.4222 28 1 2.0916 -7.1072 3.9462 29 1 3.5782 -6.8040 3.0154 30 1 3.5389 -6.4698 4.7632 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725662404.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:47 Heat of formation + Delta-G solvation = 85.884637 kcal Electronic energy + Delta-G solvation = -17110.029850 eV Core-core repulsion = 14187.344420 eV Total energy + Delta-G solvation = -2922.685430 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 249.081 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.05997 -37.14758 -36.88848 -36.75418 -35.48678 -34.35565 -32.53320 -30.46638 -29.89682 -24.89207 -24.06572 -23.15531 -20.67944 -19.91464 -19.72637 -18.32227 -17.84599 -17.62205 -17.31735 -16.86216 -16.05937 -15.56434 -15.20138 -14.86841 -14.45344 -14.34620 -14.12994 -13.87140 -13.48766 -13.31273 -12.97164 -12.42122 -12.24493 -12.18825 -12.04594 -11.87843 -11.58886 -11.19630 -11.01998 -10.36125 -9.46554 -9.29464 -5.66444 -0.47593 0.81558 0.93005 1.01265 1.17815 1.39288 1.42529 1.76629 1.86136 2.75098 3.18942 3.47469 3.68735 4.00551 4.19666 4.27262 4.36283 4.50145 4.72872 4.73949 4.89577 4.99752 5.08273 5.34114 5.42999 5.58905 5.70866 5.88332 6.08748 6.87149 7.07004 7.14038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.571 4.571 3 C 0.034 3.966 4 N -0.687 5.687 5 Si 0.925 3.075 6 H -0.214 1.214 7 H -0.274 1.274 8 H -0.255 1.255 9 S 1.831 4.169 10 O -0.921 6.921 11 O -1.045 7.045 12 N -0.932 5.932 13 C 0.352 3.648 14 C -0.063 4.063 15 N -0.149 5.149 16 C 0.046 3.954 17 N -0.109 5.109 18 N -0.455 5.455 19 H 0.459 0.541 20 H 0.016 0.984 21 H 0.046 0.954 22 H 0.093 0.907 23 H 0.142 0.858 24 H 0.328 0.672 25 H 0.423 0.577 26 H 0.412 0.588 27 H 0.267 0.733 28 H 0.139 0.861 29 H 0.159 0.841 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 -18.809 -3.247 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.662 4.662 3 C -0.213 4.213 4 N -0.302 5.302 5 Si 0.742 3.258 6 H -0.135 1.135 7 H -0.199 1.199 8 H -0.180 1.180 9 S 1.914 4.086 10 O -0.773 6.773 11 O -1.035 7.035 12 N -0.668 5.668 13 C 0.107 3.893 14 C -0.231 4.231 15 N 0.056 4.944 16 C -0.091 4.091 17 N -0.082 5.082 18 N -0.189 5.189 19 H 0.310 0.690 20 H 0.035 0.965 21 H 0.065 0.935 22 H 0.112 0.888 23 H 0.160 0.840 24 H 0.144 0.856 25 H 0.282 0.718 26 H 0.251 0.749 27 H 0.283 0.717 28 H 0.157 0.843 29 H 0.177 0.823 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.921 -17.984 -0.802 18.026 hybrid contribution -0.307 2.351 -0.818 2.508 sum 0.614 -15.633 -1.620 15.729 Atomic orbital electron populations 1.21209 0.93288 1.03079 0.99528 1.29636 1.02441 1.00411 1.33704 1.30563 0.91033 1.03163 0.96544 1.68428 1.13130 1.22806 1.25845 0.85812 0.81507 0.78373 0.80121 1.13505 1.19939 1.17954 1.78566 0.70757 0.76906 0.82347 1.85214 1.58546 1.83043 1.50474 1.92476 1.79211 1.80089 1.51699 1.61468 1.55957 1.28059 1.21347 1.21300 0.94662 0.90148 0.83214 1.23981 1.12216 0.94368 0.92487 1.46758 1.28690 1.12948 1.06020 1.23589 1.05226 0.71369 1.08894 1.82269 1.30913 0.87883 1.07139 1.48386 1.50711 1.13062 1.06715 0.69002 0.96492 0.93519 0.88820 0.84006 0.85643 0.71768 0.74863 0.71712 0.84299 0.82312 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 8.76 71.98 0.63 -0.06 16 2 C -0.57 -4.56 3.18 29.85 0.10 -4.46 16 3 C 0.03 0.46 5.33 88.67 0.47 0.94 16 4 N -0.69 -13.46 11.95 24.11 0.29 -13.17 16 5 Si 0.92 8.38 28.01 68.60 1.92 10.30 16 6 H -0.21 -1.23 6.70 99.48 0.67 -0.56 16 7 H -0.27 -3.48 7.11 99.48 0.71 -2.77 16 8 H -0.26 -2.39 7.11 99.48 0.71 -1.68 16 9 S 1.83 20.49 3.75 -56.49 -0.21 20.28 16 10 O -0.92 -12.05 13.05 -126.68 -1.65 -13.71 16 11 O -1.04 -26.73 16.80 -126.68 -2.13 -28.86 16 12 N -0.93 2.30 5.95 -55.05 -0.33 1.97 16 13 C 0.35 -1.42 7.65 131.01 1.00 -0.42 16 14 C -0.06 0.95 11.32 83.92 0.95 1.90 16 15 N -0.15 2.11 3.66 -370.45 -1.36 0.76 16 16 C 0.05 -1.13 11.30 127.77 1.44 0.31 16 17 N -0.11 0.47 13.66 37.02 0.51 0.98 16 18 N -0.46 -0.54 7.38 -55.06 -0.41 -0.94 16 19 H 0.46 3.02 7.93 -213.19 -1.69 1.33 16 20 H 0.02 0.20 8.14 -2.39 -0.02 0.18 16 21 H 0.05 0.21 6.38 -2.39 -0.02 0.19 16 22 H 0.09 -0.13 7.72 -2.39 -0.02 -0.15 16 23 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 24 H 0.33 5.38 8.23 -92.71 -0.76 4.62 16 25 H 0.42 0.55 9.03 -87.93 -0.79 -0.25 16 26 H 0.41 -4.27 8.53 -96.75 -0.83 -5.10 16 27 H 0.27 -7.02 8.06 -2.91 -0.02 -7.05 16 28 H 0.14 -3.88 8.14 -2.38 -0.02 -3.90 16 29 H 0.16 -4.94 8.13 -2.39 -0.02 -4.96 16 30 H 0.12 -2.79 8.14 -2.39 -0.02 -2.81 16 Total: 0.00 -46.27 269.25 -0.92 -47.20 By element: Atomic # 1 Polarization: -20.86 SS G_CDS: -2.15 Total: -23.01 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 4.59 Total: -1.80 kcal Atomic # 7 Polarization: -9.11 SS G_CDS: -1.30 Total: -10.41 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -3.78 Total: -42.57 kcal Atomic # 14 Polarization: 8.38 SS G_CDS: 1.92 Total: 10.30 kcal Atomic # 16 Polarization: 20.49 SS G_CDS: -0.21 Total: 20.28 kcal Total: -46.27 -0.92 -47.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725662404.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.080 kcal (2) G-P(sol) polarization free energy of solvation -46.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds