Wall clock time and date at job start Mon Mar 30 2020 03:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47246 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99883 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.46764 * 180.02562 * 12 11 10 14 14 H 1.09005 * 110.01383 * 53.62549 * 13 12 11 15 15 C 1.53872 * 110.03030 * 292.19181 * 13 12 11 16 16 C 1.54163 * 108.70535 * 193.53077 * 15 13 12 17 17 S 1.82915 * 105.08623 * 27.90727 * 16 15 13 18 18 O 1.42098 * 109.35405 * 244.47628 * 17 16 15 19 19 O 1.42104 * 109.35401 * 111.27560 * 17 16 15 20 20 C 1.55052 * 110.02534 * 174.99759 * 13 12 11 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 23 23 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 24 24 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 25 25 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 26 26 H 1.00901 * 111.00018 * 303.95220 * 11 10 9 27 27 H 1.08997 * 109.47334 * 299.99790 * 12 11 10 28 28 H 1.08995 * 109.47296 * 60.00091 * 12 11 10 29 29 H 1.09004 * 109.64371 * 313.38056 * 15 13 12 30 30 H 1.09000 * 109.64881 * 73.67222 * 15 13 12 31 31 H 1.08999 * 110.31828 * 269.00072 * 16 15 13 32 32 H 1.09004 * 110.40304 * 146.85512 * 16 15 13 33 33 H 1.08993 * 110.79038 * 279.99592 * 20 13 12 34 34 H 1.09002 * 110.78787 * 43.27002 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 7 5.4904 -2.6368 -0.0014 12 6 6.0167 -4.0082 -0.0021 13 6 7.5462 -3.9675 -0.0015 14 1 7.9026 -3.3509 0.8237 15 6 8.0590 -3.4067 -1.3395 16 6 9.5703 -3.6909 -1.4480 17 16 9.8436 -5.2002 -0.4514 18 8 10.6759 -4.8881 0.6573 19 8 10.1832 -6.2782 -1.3127 20 6 8.1156 -5.4041 0.1247 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6798 -0.8895 23 1 3.8745 -0.6809 0.8904 24 1 3.6577 -3.1515 0.8880 25 1 3.6583 -3.1496 -0.8920 26 1 5.8520 -2.1100 -0.7823 27 1 5.6672 -4.5320 0.8876 28 1 5.6672 -4.5311 -0.8924 29 1 7.5351 -3.8899 -2.1643 30 1 7.8847 -2.3313 -1.3771 31 1 10.1424 -2.8583 -1.0388 32 1 9.8502 -3.8674 -2.4866 33 1 8.0905 -5.7405 1.1611 34 1 7.5694 -6.0946 -0.5179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038084150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:02 Heat of formation + Delta-G solvation = -112.997689 kcal Electronic energy + Delta-G solvation = -15856.897018 eV Core-core repulsion = 13108.209396 eV Total energy + Delta-G solvation = -2748.687621 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.93821 -38.04786 -37.04503 -36.46731 -34.71646 -32.16140 -30.82865 -27.61432 -25.37865 -24.34535 -22.26081 -21.27537 -19.75230 -18.94426 -17.84318 -17.52539 -16.73224 -16.52609 -16.33442 -15.62094 -15.25869 -15.06337 -14.84498 -14.61169 -14.06900 -13.94836 -13.24133 -13.19505 -13.10067 -12.96666 -12.91621 -12.74510 -12.28807 -11.99413 -11.88977 -11.70692 -11.62164 -11.42043 -11.37747 -11.07887 -10.75995 -9.30187 -8.28955 -6.33764 -0.84467 1.39666 1.40427 1.52732 1.65598 2.37967 2.68323 3.05777 3.07168 3.28914 3.51149 3.70108 3.84613 4.05535 4.06054 4.34253 4.45349 4.52482 4.58560 4.73816 4.84518 4.91218 4.94148 4.98958 5.13647 5.20702 5.33317 5.51802 5.64974 6.13202 6.26804 6.58628 6.76084 7.31501 8.87789 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.056590 B = 0.003806 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.665668 B = 7354.776772 C = 7581.521678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.242 1.242 6 H -0.286 1.286 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.006 4.006 10 C 0.085 3.915 11 N -0.696 5.696 12 C 0.069 3.931 13 C -0.087 4.087 14 H 0.106 0.894 15 C -0.121 4.121 16 C -0.568 4.568 17 S 2.395 3.605 18 O -0.982 6.982 19 O -0.984 6.984 20 C -0.570 4.570 21 H 0.266 0.734 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.055 0.945 25 H 0.020 0.980 26 H 0.346 0.654 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.667 -7.706 -3.393 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.212 1.212 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.044 4.044 10 C -0.044 4.044 11 N -0.328 5.328 12 C -0.061 4.061 13 C -0.107 4.107 14 H 0.124 0.876 15 C -0.160 4.160 16 C -0.700 4.700 17 S 2.584 3.416 18 O -0.979 6.979 19 O -0.981 6.981 20 C -0.702 4.702 21 H 0.075 0.925 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.164 0.836 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.169 0.831 32 H 0.173 0.827 33 H 0.168 0.832 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 21.445 -8.113 -2.539 23.069 hybrid contribution -1.271 0.742 -0.874 1.712 sum 20.174 -7.372 -3.413 21.748 Atomic orbital electron populations 1.70075 1.08424 1.28226 1.52609 1.26039 0.95612 1.03695 0.94002 0.85576 0.79510 0.77880 0.79124 1.19442 1.16567 1.21194 1.21451 0.92182 0.93125 1.50615 0.95099 1.19455 0.93329 0.94696 0.96916 1.21622 0.86468 0.97240 0.99061 1.60485 1.07372 1.14511 1.50480 1.21940 0.92828 0.89668 1.01663 1.21888 0.96312 0.92795 0.99734 0.87568 1.22136 0.91024 1.05310 0.97496 1.30313 1.04900 1.19025 1.15811 1.08640 0.78788 0.78095 0.76111 1.93566 1.65987 1.85364 1.52993 1.93555 1.83537 1.53636 1.67351 1.30606 1.21062 1.04467 1.14082 0.92491 0.95930 0.95991 0.92689 0.96222 0.83562 0.90714 0.93853 0.88573 0.87807 0.83138 0.82659 0.83221 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 2 C 0.00 0.19 5.47 84.66 0.46 0.65 16 3 Si 0.96 43.44 27.47 68.60 1.88 45.32 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 6 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.54 -30.34 9.66 25.60 0.25 -30.09 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.28 4.30 29.85 0.13 -0.15 16 10 C 0.09 3.10 5.62 86.30 0.49 3.58 16 11 N -0.70 -18.63 6.50 -513.89 -3.34 -21.97 16 12 C 0.07 1.36 5.16 86.31 0.45 1.80 16 13 C -0.09 -1.19 2.82 -9.79 -0.03 -1.22 16 14 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 15 C -0.12 -1.26 5.25 31.28 0.16 -1.09 16 16 C -0.57 -4.94 7.26 72.38 0.53 -4.41 16 17 S 2.39 34.71 6.11 -56.49 -0.34 34.36 16 18 O -0.98 -22.33 18.15 -127.49 -2.31 -24.65 16 19 O -0.98 -21.73 18.15 -127.49 -2.31 -24.04 16 20 C -0.57 -6.28 6.67 72.68 0.48 -5.79 16 21 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 22 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 23 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 24 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.35 8.07 7.51 -89.69 -0.67 7.40 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 0.78 8.07 -2.39 -0.02 0.77 16 29 H 0.10 0.82 8.05 -2.38 -0.02 0.80 16 30 H 0.10 1.05 7.44 -2.39 -0.02 1.03 16 31 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.15 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -77.77 290.54 -2.86 -80.64 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.35 Total: 6.08 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 2.92 Total: -36.72 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -3.04 Total: -81.00 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -4.63 Total: -48.69 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Atomic # 16 Polarization: 34.71 SS G_CDS: -0.34 Total: 34.36 kcal Total: -77.77 -2.86 -80.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038084150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.361 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds