Wall clock time and date at job start Mon Mar 30 2020 04:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 108.89511 * 2 1 4 4 C 1.46896 * 110.99883 * 59.30266 * 3 2 1 5 5 C 1.53002 * 109.47246 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46931 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99398 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99350 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00340 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00090 * 10 8 6 13 13 H 1.48498 * 109.47210 * 149.99801 * 10 8 6 14 14 C 1.52383 * 108.92375 * 241.33442 * 2 1 3 15 15 C 1.54214 * 112.29655 * 239.39224 * 14 2 1 16 16 S 1.83826 * 102.86046 * 25.04168 * 15 14 2 17 17 O 1.42104 * 109.80611 * 77.68674 * 16 15 14 18 18 O 1.42098 * 109.81287 * 211.99691 * 16 15 14 19 19 C 1.54209 * 108.92683 * 118.67345 * 2 1 3 20 20 H 1.08998 * 109.47074 * 60.69693 * 1 2 3 21 21 H 1.09002 * 109.47138 * 180.70053 * 1 2 3 22 22 H 1.09005 * 109.46761 * 300.70051 * 1 2 3 23 23 H 1.00904 * 110.99913 * 183.25329 * 3 2 1 24 24 H 1.09004 * 109.47535 * 59.99892 * 4 3 2 25 25 H 1.09004 * 109.47041 * 299.99931 * 4 3 2 26 26 H 1.09000 * 109.46986 * 60.00111 * 5 4 3 27 27 H 1.08993 * 109.47662 * 299.99888 * 5 4 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 29 29 H 1.09003 * 108.92640 * 0.13143 * 14 2 1 30 30 H 1.08997 * 108.93101 * 118.65013 * 14 2 1 31 31 H 1.08997 * 110.73539 * 143.38159 * 15 14 2 32 32 H 1.09000 * 110.73544 * 266.70202 * 15 14 2 33 33 H 1.09001 * 110.73053 * 213.90156 * 19 2 1 34 34 H 1.08999 * 110.73416 * 337.21699 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0057 1.3898 0.0000 4 6 1.5138 2.1146 1.1792 5 6 2.0293 3.5547 1.1445 6 6 1.5241 4.2984 2.3540 7 1 0.8983 3.7942 3.0755 8 6 1.8608 5.6225 2.5394 9 7 1.4203 6.2713 3.5952 10 14 2.9426 6.4949 1.2912 11 1 4.3682 6.3362 1.6750 12 1 2.7231 5.9032 -0.0531 13 1 2.5962 7.9385 1.2591 14 6 2.0242 -0.6915 -1.2648 15 6 2.9011 -1.9215 -0.9546 16 16 2.3257 -2.4230 0.7177 17 8 1.0897 -3.1164 0.6137 18 8 3.4046 -2.9897 1.4484 19 6 2.0302 -0.6999 1.2798 20 1 -0.3633 0.5030 -0.8962 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3633 0.5247 0.8837 23 1 3.0126 1.4274 -0.0535 24 1 1.8718 1.6226 2.0836 25 1 0.4237 2.1182 1.1749 26 1 1.6715 4.0470 0.2402 27 1 3.1192 3.5508 1.1491 28 1 1.6575 7.2028 3.7258 29 1 1.1635 -1.0102 -1.8528 30 1 2.6065 0.0189 -1.8517 31 1 2.7215 -2.7160 -1.6788 32 1 3.9560 -1.6479 -0.9337 33 1 2.9557 -0.2445 1.6321 34 1 1.2663 -0.6750 2.0570 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044300723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:45 Heat of formation + Delta-G solvation = -99.200990 kcal Electronic energy + Delta-G solvation = -16575.610758 eV Core-core repulsion = 13827.521407 eV Total energy + Delta-G solvation = -2748.089352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92225 -38.09071 -37.06845 -35.82571 -34.19458 -31.84514 -30.16632 -28.79464 -26.53272 -24.60809 -22.10597 -20.58870 -19.87049 -18.93332 -17.86918 -17.30423 -17.03872 -16.39837 -16.23281 -15.74245 -15.21274 -15.05868 -14.57230 -14.49382 -14.35450 -13.54355 -13.33129 -13.27410 -13.19581 -13.06188 -12.80281 -12.55167 -12.41159 -12.17002 -11.85464 -11.77583 -11.59473 -11.49748 -11.32663 -11.12561 -10.75872 -9.37574 -8.29489 -6.34174 -0.89454 1.37257 1.40114 1.52490 1.53083 2.37199 2.62810 2.96498 3.06709 3.12377 3.53553 3.71408 3.76133 3.92486 4.05380 4.40119 4.50722 4.59265 4.66513 4.74156 4.83471 4.91152 4.97145 5.02146 5.23872 5.32197 5.40870 5.51745 5.66063 6.09940 6.25948 6.54545 6.75634 7.31019 8.87321 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.041383 B = 0.005101 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.450619 B = 5487.943167 C = 5570.186882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 N -0.669 5.669 4 C 0.078 3.922 5 C -0.007 4.007 6 C -0.534 4.534 7 H 0.029 0.971 8 C 0.003 3.997 9 N -0.953 5.953 10 Si 0.955 3.045 11 H -0.266 1.266 12 H -0.244 1.244 13 H -0.287 1.287 14 C -0.114 4.114 15 C -0.545 4.545 16 S 2.383 3.617 17 O -0.964 6.964 18 O -0.983 6.983 19 C -0.615 4.615 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.349 0.651 24 H 0.025 0.975 25 H 0.061 0.939 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.266 0.734 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.143 0.857 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 -16.339 -13.420 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 N -0.301 5.301 4 C -0.051 4.051 5 C -0.044 4.044 6 C -0.572 4.572 7 H 0.048 0.952 8 C -0.194 4.194 9 N -0.594 5.594 10 Si 0.779 3.221 11 H -0.191 1.191 12 H -0.167 1.167 13 H -0.213 1.213 14 C -0.153 4.153 15 C -0.678 4.678 16 S 2.570 3.430 17 O -0.961 6.961 18 O -0.980 6.980 19 C -0.747 4.747 20 H 0.097 0.903 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.169 0.831 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.161 0.839 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.349 -16.891 -13.263 21.736 hybrid contribution 0.724 1.245 0.869 1.682 sum 4.073 -15.647 -12.394 20.372 Atomic orbital electron populations 1.22282 0.92822 1.03177 1.03435 1.21235 0.96910 0.88950 0.90385 1.60784 1.16476 1.11177 1.41684 1.21757 0.99701 0.93453 0.90198 1.19461 0.96145 0.93580 0.95256 1.21442 1.31359 0.96512 1.07910 0.95231 1.26042 0.97464 0.98389 0.97490 1.70080 1.47710 1.11210 1.30389 0.85582 0.78926 0.77169 0.80469 1.19148 1.16690 1.21328 1.21815 1.01332 0.95517 0.96596 1.30244 1.10938 1.07782 1.18865 1.09152 0.74709 0.78087 0.81007 1.93574 1.44494 1.71212 1.86860 1.93549 1.55662 1.76961 1.71827 1.31229 1.11820 1.23286 1.08326 0.90316 0.90133 0.93076 0.83102 0.95717 0.92056 0.95765 0.96130 0.92535 0.87460 0.86628 0.81796 0.82229 0.83907 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 7.60 71.98 0.55 -2.98 16 2 C 0.12 2.40 0.81 3.73 0.00 2.40 16 3 N -0.67 -17.36 5.80 -469.17 -2.72 -20.08 16 4 C 0.08 2.79 4.90 86.30 0.42 3.21 16 5 C -0.01 -0.29 4.30 29.85 0.13 -0.17 16 6 C -0.53 -30.29 9.66 25.60 0.25 -30.04 16 7 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 8 C 0.00 0.16 5.47 84.66 0.46 0.62 16 9 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 10 Si 0.96 43.55 27.47 68.60 1.88 45.43 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 14 C -0.11 -1.45 5.76 30.80 0.18 -1.28 16 15 C -0.55 -5.23 7.40 72.39 0.54 -4.69 16 16 S 2.38 44.47 6.07 -56.49 -0.34 44.12 16 17 O -0.96 -24.02 17.72 -127.53 -2.26 -26.28 16 18 O -0.98 -25.99 18.16 -127.53 -2.32 -28.30 16 19 C -0.62 -12.39 5.07 72.39 0.37 -12.02 16 20 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.08 1.57 7.70 -2.39 -0.02 1.55 16 22 H 0.05 1.32 6.28 -2.38 -0.01 1.31 16 23 H 0.35 7.81 8.67 -89.69 -0.78 7.03 16 24 H 0.02 0.90 6.87 -2.39 -0.02 0.88 16 25 H 0.06 2.32 6.22 -2.38 -0.01 2.31 16 26 H 0.02 1.08 7.20 -2.39 -0.02 1.07 16 27 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 28 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 29 H 0.11 1.13 7.52 -2.39 -0.02 1.11 16 30 H 0.12 1.30 7.76 -2.39 -0.02 1.28 16 31 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.14 2.73 7.77 -2.39 -0.02 2.71 16 34 H 0.13 2.84 7.79 -2.39 -0.02 2.82 16 Total: -1.00 -77.05 283.00 -2.30 -79.35 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.26 Total: 10.05 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 2.89 Total: -44.93 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.42 Total: -79.44 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -4.58 Total: -54.58 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Atomic # 16 Polarization: 44.47 SS G_CDS: -0.34 Total: 44.12 kcal Total: -77.05 -2.30 -79.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044300723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.849 kcal (2) G-P(sol) polarization free energy of solvation -77.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds