Wall clock time and date at job start Mon Mar 30 2020 03:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38337 * 119.89428 * 2 1 4 4 C 1.38300 * 120.28647 * 179.97438 * 3 2 1 5 5 C 1.38405 * 119.87987 * 359.96431 * 4 3 2 6 6 C 1.39517 * 119.85104 * 0.08111 * 5 4 3 7 7 C 1.38222 * 119.88869 * 179.97438 * 2 1 3 8 8 N 1.39945 * 119.29818 * 179.88630 * 6 5 4 9 9 C 1.37097 * 120.49636 * 195.40355 * 8 6 5 10 10 H 1.07997 * 120.00131 * 221.96506 * 9 8 6 11 11 C 1.38877 * 119.99747 * 41.96716 * 9 8 6 12 12 N 1.31429 * 120.00376 * 15.53823 * 11 9 8 13 13 Si 1.86801 * 119.99626 * 195.53934 * 11 9 8 14 14 H 1.48498 * 109.47217 * 60.00085 * 13 11 9 15 15 H 1.48502 * 109.46929 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47356 * 299.99701 * 13 11 9 17 17 C 1.35082 * 119.01038 * 15.42534 * 8 6 5 18 18 O 1.21284 * 120.12478 * 181.68111 * 17 8 6 19 19 C 1.50754 * 119.74766 * 1.71100 * 17 8 6 20 20 H 1.09001 * 109.41728 * 208.66497 * 19 17 8 21 21 C 1.53000 * 109.44923 * 88.74182 * 19 17 8 22 22 O 1.35932 * 120.68476 * 180.02562 * 5 4 3 23 23 H 1.09003 * 109.46943 * 270.02837 * 1 2 3 24 24 H 1.09001 * 109.46469 * 30.02410 * 1 2 3 25 25 H 1.08998 * 109.47135 * 150.02162 * 1 2 3 26 26 H 1.07998 * 119.85675 * 359.94780 * 3 2 1 27 27 H 1.08006 * 120.06294 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.09776 * 0.02562 * 7 2 1 29 29 H 0.96995 * 120.00286 * 179.97438 * 12 11 9 30 30 H 1.08996 * 109.47085 * 299.83958 * 21 19 17 31 31 H 1.09004 * 109.46885 * 59.83707 * 21 19 17 32 32 H 1.08995 * 109.46840 * 179.83370 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1993 0.0000 4 6 3.5794 1.2088 0.0005 5 6 4.2771 0.0135 0.0018 6 6 3.5821 -1.1963 0.0009 7 6 2.1958 -1.1984 0.0005 8 7 4.2992 -2.3981 -0.0002 9 6 3.6777 -3.5788 -0.3150 10 1 3.8896 -4.4699 0.2573 11 6 2.7757 -3.6291 -1.3698 12 7 2.7391 -2.6540 -2.2502 13 14 1.6145 -5.0827 -1.5371 14 1 0.7576 -5.1735 -0.3277 15 1 0.7588 -4.8971 -2.7365 16 1 2.4034 -6.3326 -1.6798 17 6 5.6129 -2.3774 0.3138 18 8 6.2608 -3.4024 0.2896 19 6 6.2703 -1.0755 0.6953 20 1 7.3257 -1.1096 0.4250 21 6 6.1378 -0.8608 2.2044 22 8 5.6364 0.0037 0.0029 23 1 -0.3633 0.0005 1.0277 24 1 -0.3632 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6524 2.1322 -0.0009 27 1 4.1141 2.1472 0.0001 28 1 1.6555 -2.1335 0.0005 29 1 2.1094 -2.6893 -2.9871 30 1 5.0826 -0.8254 2.4750 31 1 6.6209 -1.6832 2.7321 32 1 6.6156 0.0790 2.4810 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057788454.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:23 Heat of formation + Delta-G solvation = -61.698478 kcal Electronic energy + Delta-G solvation = -18533.621932 eV Core-core repulsion = 15651.714860 eV Total energy + Delta-G solvation = -2881.907072 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.33166 -39.54389 -38.69240 -36.86053 -34.01705 -33.27916 -31.85255 -30.59713 -27.95294 -27.14843 -24.86670 -23.78652 -23.00471 -20.44529 -19.55076 -19.11684 -17.88193 -17.01023 -16.85391 -16.34602 -15.88142 -15.64244 -15.32695 -14.95954 -14.74155 -14.46417 -13.93292 -13.68978 -13.50139 -13.31132 -13.12533 -12.86283 -12.81081 -12.74798 -12.41610 -12.25081 -11.82760 -11.77906 -11.28685 -10.81488 -10.46346 -9.17852 -8.73146 -8.28280 -6.37267 0.40038 0.62168 1.31067 1.33345 1.44735 1.73310 2.06049 2.36473 2.73765 2.81026 3.12474 3.41162 3.91293 3.97110 4.06371 4.19305 4.42390 4.58495 4.61947 4.67023 4.84843 4.87041 4.94610 5.01779 5.15710 5.24256 5.29991 5.42617 5.55577 5.83232 5.99291 6.04478 6.14298 6.50557 6.84893 7.13033 7.59995 8.53720 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.013461 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.597230 B = 2079.547726 C = 3322.665989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.116 4.116 5 C 0.030 3.970 6 C 0.113 3.887 7 C -0.100 4.100 8 N -0.394 5.394 9 C -0.379 4.379 10 H 0.075 0.925 11 C 0.019 3.981 12 N -0.866 5.866 13 Si 0.983 3.017 14 H -0.254 1.254 15 H -0.266 1.266 16 H -0.273 1.273 17 C 0.424 3.576 18 O -0.590 6.590 19 C 0.082 3.918 20 H 0.153 0.847 21 C -0.159 4.159 22 O -0.313 6.313 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.162 0.838 27 H 0.155 0.845 28 H 0.105 0.895 29 H 0.278 0.722 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 9.354 5.487 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.016 4.016 6 C 0.017 3.983 7 C -0.122 4.122 8 N -0.104 5.104 9 C -0.505 4.505 10 H 0.093 0.907 11 C -0.187 4.187 12 N -0.499 5.499 13 Si 0.804 3.196 14 H -0.178 1.178 15 H -0.190 1.190 16 H -0.199 1.199 17 C 0.215 3.785 18 O -0.474 6.474 19 C 0.022 3.978 20 H 0.171 0.829 21 C -0.216 4.216 22 O -0.229 6.229 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.180 0.820 27 H 0.173 0.827 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.861 8.952 5.189 11.044 hybrid contribution -0.149 -1.544 -0.467 1.620 sum -4.010 7.408 4.722 9.657 Atomic orbital electron populations 1.20713 0.89117 1.02923 1.02930 1.20067 0.97548 0.91984 1.00373 1.20999 0.92542 0.98098 1.02902 1.20631 0.94323 0.95184 1.03302 1.18939 0.82157 0.93151 1.07361 1.18560 0.93343 0.84867 1.01561 1.20485 0.91431 0.98358 1.01887 1.41465 1.06629 1.06470 1.55817 1.19394 1.26284 0.88328 1.16502 0.90679 1.26246 0.99264 1.00685 0.92540 1.70105 1.34433 1.34102 1.11254 0.85178 0.77923 0.77527 0.78981 1.17835 1.18993 1.19856 1.22243 0.82563 0.92238 0.81458 1.90505 1.63439 1.36900 1.56545 1.22895 0.98196 0.81210 0.95450 0.82933 1.22228 1.02891 1.05076 0.91453 1.86100 1.16841 1.47222 1.72735 0.89935 0.89408 0.93095 0.82021 0.82736 0.87734 0.91209 0.93310 0.90016 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.68 10.01 71.24 0.71 -1.97 16 2 C -0.10 -3.52 5.88 -19.85 -0.12 -3.64 16 3 C -0.13 -3.92 9.69 22.31 0.22 -3.70 16 4 C -0.12 -3.96 10.00 22.32 0.22 -3.74 16 5 C 0.03 1.28 5.85 22.62 0.13 1.41 16 6 C 0.11 5.60 5.47 38.25 0.21 5.81 16 7 C -0.10 -4.58 7.35 22.36 0.16 -4.41 16 8 N -0.39 -21.98 2.75 -458.12 -1.26 -23.24 16 9 C -0.38 -22.11 8.32 84.02 0.70 -21.41 16 10 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 11 C 0.02 1.05 3.50 84.91 0.30 1.34 16 12 N -0.87 -48.06 11.45 21.65 0.25 -47.81 16 13 Si 0.98 41.85 29.58 68.60 2.03 43.88 16 14 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 15 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 C 0.42 22.53 6.87 87.63 0.60 23.14 16 18 O -0.59 -34.86 17.09 -3.04 -0.05 -34.91 16 19 C 0.08 3.30 3.81 29.87 0.11 3.41 16 20 H 0.15 5.38 8.14 -2.39 -0.02 5.36 16 21 C -0.16 -5.05 9.30 71.98 0.67 -4.38 16 22 O -0.31 -13.16 10.18 -92.79 -0.94 -14.10 16 23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 25 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 26 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 27 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.10 5.14 6.11 -2.91 -0.02 5.12 16 29 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.05 1.68 7.81 -2.39 -0.02 1.66 16 31 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -71.71 273.36 5.07 -66.64 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.13 Total: 17.69 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 3.92 Total: -8.14 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -1.01 Total: -71.05 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -1.00 Total: -49.01 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -71.71 5.07 -66.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057788454.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.938 kcal (2) G-P(sol) polarization free energy of solvation -71.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds