Wall clock time and date at job start Mon Mar 30 2020 03:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99665 * 2 1 4 4 H 1.48493 * 109.46996 * 239.99839 * 3 2 1 5 5 H 1.48502 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47103 * 119.99697 * 3 2 1 7 7 C 1.37870 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00186 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00113 * 0.02562 * 7 2 1 10 10 O 1.42102 * 104.27831 * 63.92900 * 9 7 2 11 11 O 1.42098 * 104.27743 * 296.06945 * 9 7 2 12 12 C 1.81408 * 104.44749 * 179.97438 * 9 7 2 13 13 C 1.53000 * 109.46799 * 179.97438 * 12 9 7 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 9 15 15 H 1.09009 * 109.46474 * 55.02375 * 14 13 12 16 16 C 1.53035 * 109.46508 * 175.00413 * 14 13 12 17 17 C 1.53123 * 109.27860 * 179.19764 * 16 14 13 18 18 C 1.53120 * 109.15950 * 302.34102 * 17 16 14 19 19 C 1.53034 * 109.27522 * 57.65642 * 18 17 16 20 20 N 1.46840 * 109.52752 * 300.81779 * 19 18 17 21 21 H 0.96996 * 120.00664 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46823 * 60.00116 * 12 9 7 23 23 H 1.08992 * 109.47429 * 300.00152 * 12 9 7 24 24 H 1.09002 * 109.47398 * 300.00340 * 13 12 9 25 25 H 1.09001 * 109.47194 * 60.00520 * 13 12 9 26 26 H 1.09000 * 109.49826 * 299.13340 * 16 14 13 27 27 H 1.08993 * 109.50419 * 59.21079 * 16 14 13 28 28 H 1.09000 * 109.52236 * 62.24937 * 17 16 14 29 29 H 1.09005 * 109.52076 * 182.37834 * 17 16 14 30 30 H 1.08998 * 109.50351 * 177.59502 * 18 17 16 31 31 H 1.09002 * 109.50068 * 297.67958 * 18 17 16 32 32 H 1.08998 * 109.46489 * 60.83780 * 19 18 17 33 33 H 1.09001 * 109.46278 * 180.80455 * 19 18 17 34 34 H 1.00900 * 111.00095 * 297.64939 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4247 -2.7212 -1.2367 11 8 0.4238 -2.7206 1.2372 12 6 2.4187 -3.9902 0.0005 13 6 1.7726 -5.3772 0.0012 14 6 2.8648 -6.4485 0.0018 15 1 3.5366 -6.2819 0.8440 16 6 2.2223 -7.8317 0.1281 17 6 3.3175 -8.9016 0.1082 18 6 4.1248 -8.7703 -1.1863 19 6 4.7122 -7.3600 -1.2745 20 7 3.6249 -6.3732 -1.2524 21 1 -0.4851 0.8400 0.0004 22 1 3.0378 -3.8778 0.8906 23 1 3.0378 -3.8779 -0.8893 24 1 1.1536 -5.4893 0.8914 25 1 1.1532 -5.4899 -0.8886 26 1 1.6712 -7.8926 1.0666 27 1 1.5395 -7.9933 -0.7060 28 1 3.9774 -8.7634 0.9647 29 1 2.8615 -9.8906 0.1554 30 1 4.9329 -9.5018 -1.1870 31 1 3.4726 -8.9477 -2.0414 32 1 5.3751 -7.1889 -0.4264 33 1 5.2757 -7.2586 -2.2020 34 1 3.0178 -6.4862 -2.0504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058260836.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:31 Heat of formation + Delta-G solvation = -108.712146 kcal Electronic energy + Delta-G solvation = -16447.528240 eV Core-core repulsion = 13699.026453 eV Total energy + Delta-G solvation = -2748.501786 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.06953 -34.93204 -33.97722 -33.82108 -32.88072 -31.68968 -29.48300 -26.10589 -24.38491 -23.14608 -21.03952 -20.47068 -18.34683 -16.74055 -15.79355 -15.50665 -15.35648 -14.89625 -14.36643 -14.17286 -14.04889 -13.85043 -13.31538 -12.90100 -12.29769 -12.18956 -11.88536 -11.66970 -11.38702 -11.18289 -11.11713 -11.00852 -10.78916 -10.62715 -10.58074 -10.52556 -10.14003 -10.04481 -9.16457 -9.10711 -8.55660 -8.27590 -6.56100 -5.18146 2.06187 3.16117 3.19370 3.24687 4.13144 4.23144 4.58751 4.70265 4.77285 4.84740 4.91255 5.21056 5.25683 5.32711 5.33926 5.51792 5.60249 5.70235 5.71458 5.82954 5.84156 5.89146 5.95370 6.00327 6.06667 6.14821 6.29134 6.63833 6.90052 7.09249 7.41776 7.43216 8.04506 9.01346 10.38183 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.045767 B = 0.005404 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.644531 B = 5180.336742 C = 5500.040595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.134 3.866 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -1.010 5.010 8 H 0.098 0.902 9 S 2.529 3.471 10 O -0.983 6.983 11 O -0.985 6.985 12 C -0.621 4.621 13 C -0.104 4.104 14 C 0.095 3.905 15 H 0.083 0.917 16 C -0.158 4.158 17 C -0.119 4.119 18 C -0.159 4.159 19 C 0.057 3.943 20 N -0.678 5.678 21 H 0.288 0.712 22 H 0.114 0.886 23 H 0.128 0.872 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -14.052 -0.970 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.084 4.084 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.190 1.190 7 C -1.142 5.142 8 H 0.116 0.884 9 S 2.713 3.287 10 O -0.980 6.980 11 O -0.982 6.982 12 C -0.746 4.746 13 C -0.142 4.142 14 C -0.015 4.015 15 H 0.101 0.899 16 C -0.197 4.197 17 C -0.156 4.156 18 C -0.198 4.198 19 C -0.073 4.073 20 N -0.307 5.307 21 H 0.098 0.902 22 H 0.133 0.867 23 H 0.147 0.853 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.127 -13.605 -0.753 15.377 hybrid contribution 0.878 0.056 -0.117 0.887 sum 8.005 -13.548 -0.871 15.761 Atomic orbital electron populations 1.69942 1.06723 1.30300 1.39573 1.24711 0.94422 1.00542 0.88738 0.86261 0.79905 0.79994 0.79695 1.18909 1.20209 1.18955 1.30221 1.05507 1.11389 1.67117 0.88390 1.03499 0.75204 0.75883 0.74074 1.93344 1.71334 1.87155 1.46146 1.93343 1.71347 1.87194 1.46293 1.30483 1.20740 1.12834 1.10501 1.21328 0.97256 0.92675 1.02975 1.21565 0.94567 0.92299 0.93113 0.89874 1.22349 0.98312 0.96190 1.02840 1.21550 0.97606 0.98675 0.97808 1.22287 1.00114 0.99327 0.98122 1.22010 0.94343 0.88475 1.02437 1.60615 1.14818 1.50864 1.04454 0.90202 0.86696 0.85320 0.90443 0.90916 0.91106 0.91747 0.91929 0.92194 0.91763 0.92060 0.91048 0.90815 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.21 13.03 55.43 0.72 -24.48 16 2 C 0.13 3.82 5.46 -17.82 -0.10 3.72 16 3 Si 0.92 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 7 C -1.01 -28.10 9.32 30.60 0.29 -27.82 16 8 H 0.10 2.46 7.81 -52.49 -0.41 2.05 16 9 S 2.53 65.65 4.48 -107.50 -0.48 65.17 16 10 O -0.98 -28.50 17.85 -57.54 -1.03 -29.53 16 11 O -0.98 -28.57 17.85 -57.54 -1.03 -29.59 16 12 C -0.62 -11.74 5.87 37.16 0.22 -11.53 16 13 C -0.10 -1.68 4.85 -26.73 -0.13 -1.81 16 14 C 0.10 1.25 2.42 -67.72 -0.16 1.09 16 15 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 16 C -0.16 -1.73 5.36 -26.65 -0.14 -1.87 16 17 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 18 C -0.16 -1.42 6.08 -26.65 -0.16 -1.58 16 19 C 0.06 0.58 6.55 -3.84 -0.03 0.56 16 20 N -0.68 -8.55 5.95 -106.76 -0.64 -9.19 16 21 H 0.29 7.82 8.31 -40.82 -0.34 7.48 16 22 H 0.11 1.99 8.14 -51.92 -0.42 1.57 16 23 H 0.13 2.33 7.75 -51.93 -0.40 1.93 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.34 4.10 8.79 -39.29 -0.35 3.76 16 LS Contribution 292.31 15.07 4.40 4.40 Total: -1.00 -34.89 292.31 -8.81 -43.69 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.37 Total: 4.09 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: -0.38 Total: -40.51 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.09 Total: -33.67 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -2.05 Total: -59.13 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 65.65 SS G_CDS: -0.48 Total: 65.17 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.89 -8.81 -43.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058260836.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.018 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds