Wall clock time and date at job start Mon Mar 30 2020 03:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31388 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47415 * 300.00421 * 3 2 1 6 6 H 1.48505 * 109.46653 * 60.00428 * 3 2 1 7 7 C 1.39020 * 119.99492 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99158 * 179.97438 * 7 2 1 9 9 N 1.36895 * 120.00688 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00267 * 180.02562 * 9 7 2 11 11 O 1.21615 * 119.99846 * 359.97438 * 10 9 7 12 12 C 1.47496 * 120.00009 * 179.97438 * 10 9 7 13 13 C 1.39829 * 120.16827 * 359.72243 * 12 10 9 14 14 C 1.37488 * 119.80027 * 179.84675 * 13 12 10 15 15 C 1.39456 * 120.42156 * 0.54034 * 14 13 12 16 16 C 1.38698 * 119.93452 * 359.58185 * 15 14 13 17 17 C 1.38063 * 119.97156 * 0.17590 * 16 15 14 18 18 C 1.50805 * 121.38119 * 180.33943 * 16 15 14 19 19 C 1.53066 * 109.68092 * 342.22979 * 18 16 15 20 20 C 1.53405 * 108.28817 * 48.17932 * 19 18 16 21 21 O 1.35719 * 118.33908 * 179.44421 * 15 14 13 22 22 H 0.96996 * 119.99672 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99686 * 359.97438 * 9 7 2 24 24 H 1.08000 * 120.09402 * 0.07764 * 13 12 10 25 25 H 1.08000 * 119.78415 * 180.27288 * 14 13 12 26 26 H 1.08005 * 119.89158 * 179.97438 * 17 16 15 27 27 H 1.08996 * 109.43644 * 102.29811 * 18 16 15 28 28 H 1.08998 * 109.43317 * 222.16819 * 18 16 15 29 29 H 1.08998 * 109.69655 * 167.87636 * 19 18 16 30 30 H 1.08998 * 109.70027 * 288.48183 * 19 18 16 31 31 H 1.09003 * 109.68105 * 54.92104 * 20 19 18 32 32 H 1.08997 * 109.68461 * 175.43800 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.7079 1.3464 -0.0006 5 1 1.8891 2.3965 -1.2124 6 1 1.8891 2.3963 1.2126 7 6 2.0089 -1.2040 -0.0005 8 1 3.0889 -1.2039 -0.0010 9 7 1.3244 -2.3896 -0.0016 10 6 1.9983 -3.5568 -0.0016 11 8 3.2145 -3.5568 -0.0011 12 6 1.2608 -4.8341 -0.0022 13 6 -0.1375 -4.8382 0.0031 14 6 -0.8173 -6.0333 -0.0006 15 6 -0.1212 -7.2417 0.0016 16 6 1.2658 -7.2414 -0.0011 17 6 1.9553 -6.0453 -0.0023 18 6 2.0513 -8.5287 -0.0064 19 6 1.1491 -9.6850 0.4319 20 6 -0.1615 -9.6000 -0.3609 21 8 -0.8346 -8.3961 0.0093 22 1 -0.4849 0.8400 0.0004 23 1 0.3545 -2.3895 -0.0016 24 1 -0.6817 -3.9054 0.0064 25 1 -1.8973 -6.0361 -0.0010 26 1 3.0354 -6.0466 -0.0040 27 1 2.4252 -8.7214 -1.0119 28 1 2.8919 -8.4435 0.6823 29 1 1.6425 -10.6346 0.2253 30 1 0.9393 -9.6035 1.4984 31 1 0.0558 -9.5854 -1.4289 32 1 -0.7892 -10.4595 -0.1257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082535237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:24 Heat of formation + Delta-G solvation = -62.059239 kcal Electronic energy + Delta-G solvation = -17164.419706 eV Core-core repulsion = 14282.496991 eV Total energy + Delta-G solvation = -2881.922716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.49717 -38.49889 -36.54079 -34.30436 -34.01051 -31.50487 -30.30642 -29.91631 -26.05887 -24.89739 -23.70587 -22.21362 -20.80363 -18.94211 -18.15023 -17.51014 -16.78481 -15.92957 -15.25311 -14.84429 -14.34209 -14.29555 -13.94805 -13.64615 -13.39320 -13.14118 -12.98664 -12.90881 -12.50686 -11.68034 -11.50754 -11.27057 -11.13372 -10.98467 -10.74368 -10.39477 -10.33533 -10.20454 -9.60434 -8.53227 -8.48798 -8.07421 -7.82544 -6.53218 -3.86870 1.42035 1.66227 3.13371 3.23289 3.30851 3.33979 3.67118 4.11103 4.48566 4.57210 4.65441 4.74503 4.94590 5.02515 5.15119 5.31413 5.33751 5.43447 5.52510 5.62815 5.75399 5.82357 5.94138 6.00237 6.08596 6.33846 6.58457 6.73619 6.91950 7.00372 7.45921 7.59986 7.99409 8.53369 9.08867 9.45474 10.00531 10.64068 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.053736 B = 0.004795 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.943188 B = 5838.285882 C = 6317.826350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.295 4.295 8 H 0.108 0.892 9 N -0.546 5.546 10 C 0.471 3.529 11 O -0.600 6.600 12 C -0.124 4.124 13 C -0.071 4.071 14 C -0.151 4.151 15 C 0.126 3.874 16 C -0.169 4.169 17 C -0.042 4.042 18 C -0.075 4.075 19 C -0.159 4.159 20 C 0.061 3.939 21 O -0.318 6.318 22 H 0.275 0.725 23 H 0.394 0.606 24 H 0.134 0.866 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 -15.886 -0.377 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.180 4.180 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.424 4.424 8 H 0.126 0.874 9 N -0.180 5.180 10 C 0.259 3.741 11 O -0.487 6.487 12 C -0.128 4.128 13 C -0.090 4.090 14 C -0.170 4.170 15 C 0.081 3.919 16 C -0.170 4.170 17 C -0.062 4.062 18 C -0.112 4.112 19 C -0.197 4.197 20 C -0.014 4.014 21 O -0.232 6.232 22 H 0.084 0.916 23 H 0.228 0.772 24 H 0.152 0.848 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.180 -15.702 -0.331 15.856 hybrid contribution -0.071 0.790 -0.046 0.795 sum -2.251 -14.911 -0.376 15.085 Atomic orbital electron populations 1.69607 1.06106 1.28545 1.48927 1.25370 0.95691 1.00040 0.96929 0.85731 0.79773 0.80631 0.77849 1.19018 1.20561 1.20553 1.19875 0.93732 0.82162 1.46668 0.87442 1.41890 1.09466 1.04719 1.61922 1.17645 0.87422 0.83251 0.85752 1.90589 1.13333 1.87141 1.57655 1.20218 0.93314 0.94887 1.04349 1.21218 0.93524 0.97647 0.96647 1.20431 1.00087 0.89579 1.06853 1.18797 0.89563 0.85641 0.97903 1.19675 0.92315 0.95852 1.09178 1.20937 1.00372 0.89759 0.95117 1.20441 0.97591 0.90878 1.02330 1.22229 0.96625 0.99412 1.01387 1.22912 0.94136 0.85641 0.98712 1.85931 1.39127 1.14198 1.83968 0.91551 0.77152 0.84826 0.85256 0.84868 0.90625 0.90009 0.90009 0.90481 0.91975 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.05 55.50 0.72 -23.24 16 2 C 0.02 0.60 5.50 -17.45 -0.10 0.51 16 3 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.29 -8.27 9.68 -15.00 -0.15 -8.42 16 8 H 0.11 3.15 7.15 -52.48 -0.38 2.77 16 9 N -0.55 -14.31 5.23 -11.94 -0.06 -14.37 16 10 C 0.47 11.97 7.71 -12.49 -0.10 11.87 16 11 O -0.60 -17.09 15.91 5.26 0.08 -17.01 16 12 C -0.12 -2.58 5.87 -105.01 -0.62 -3.19 16 13 C -0.07 -1.29 9.53 -39.26 -0.37 -1.66 16 14 C -0.15 -2.43 9.91 -39.40 -0.39 -2.82 16 15 C 0.13 1.98 6.49 -38.96 -0.25 1.73 16 16 C -0.17 -2.63 5.75 -104.47 -0.60 -3.23 16 17 C -0.04 -0.78 9.21 -39.13 -0.36 -1.14 16 18 C -0.08 -0.87 5.85 -27.80 -0.16 -1.04 16 19 C -0.16 -1.48 6.19 -26.49 -0.16 -1.64 16 20 C 0.06 0.60 7.02 37.37 0.26 0.86 16 21 O -0.32 -4.39 10.26 -18.86 -0.19 -4.59 16 22 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 23 H 0.39 9.75 5.92 -40.82 -0.24 9.50 16 24 H 0.13 2.35 6.41 -52.49 -0.34 2.01 16 25 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.13 2.47 7.64 -52.48 -0.40 2.07 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -31.59 276.37 -6.75 -38.34 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -3.45 Total: 9.14 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -3.00 Total: -8.17 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.66 Total: -37.61 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.11 Total: -21.60 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.59 -6.75 -38.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082535237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.717 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds