Wall clock time and date at job start Mon Mar 30 2020 03:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00060 * 2 1 4 4 H 1.48509 * 109.46781 * 269.99387 * 3 2 1 5 5 H 1.48493 * 109.47280 * 29.99145 * 3 2 1 6 6 H 1.48502 * 109.47359 * 149.99797 * 3 2 1 7 7 C 1.38892 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 166.56089 * 7 2 1 9 9 N 1.36770 * 119.99779 * 346.56117 * 7 2 1 10 10 C 1.46877 * 120.48320 * 332.43473 * 9 7 2 11 11 C 1.53433 * 107.83645 * 224.94310 * 10 9 7 12 12 C 1.52863 * 108.80243 * 296.78879 * 11 10 9 13 13 C 1.50639 * 110.42852 * 51.10285 * 12 11 10 14 14 C 1.37010 * 118.80756 * 159.68443 * 13 12 11 15 15 C 1.39726 * 120.20499 * 179.79350 * 14 13 12 16 16 C 1.47385 * 120.07337 * 179.97438 * 15 14 13 17 17 O 1.21520 * 119.99988 * 359.97438 * 16 15 14 18 18 O 1.34777 * 120.00277 * 179.97438 * 16 15 14 19 19 C 1.39923 * 119.85764 * 0.19081 * 15 14 13 20 20 C 1.36501 * 119.77299 * 359.57406 * 19 15 14 21 21 C 1.39022 * 120.48127 * 152.45384 * 9 7 2 22 22 H 0.96999 * 120.00098 * 5.04448 * 1 2 3 23 23 H 1.08998 * 109.78970 * 105.36190 * 10 9 7 24 24 H 1.08999 * 109.83751 * 344.54832 * 10 9 7 25 25 H 1.09002 * 109.58268 * 176.99553 * 11 10 9 26 26 H 1.09002 * 109.69663 * 56.65616 * 11 10 9 27 27 H 1.08993 * 109.31467 * 290.80598 * 12 11 10 28 28 H 1.09002 * 109.30915 * 171.39379 * 12 11 10 29 29 H 1.07997 * 119.90255 * 359.81587 * 14 13 12 30 30 H 0.96704 * 116.99672 * 180.02562 * 18 16 15 31 31 H 1.08002 * 120.11165 * 179.80441 * 19 15 14 32 32 H 1.07994 * 119.88492 * 180.28349 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0096 -1.2028 0.0005 8 1 3.0674 -1.2157 -0.2168 9 7 1.3538 -2.3709 0.2763 10 6 0.1560 -2.3702 1.1264 11 6 0.2857 -3.5301 2.1223 12 6 0.3096 -4.8463 1.3452 13 6 1.3381 -4.7893 0.2460 14 6 1.8093 -5.9639 -0.2788 15 6 2.7604 -5.9450 -1.3023 16 6 3.2657 -7.2103 -1.8643 17 8 2.8556 -8.2715 -1.4373 18 8 4.1827 -7.1904 -2.8519 19 6 3.2353 -4.7223 -1.7894 20 6 2.7599 -3.5540 -1.2675 21 6 1.8115 -3.5763 -0.2435 22 1 -0.4850 0.8368 -0.0739 23 1 -0.7330 -2.5096 0.5114 24 1 0.0865 -1.4261 1.6667 25 1 -0.5651 -3.5236 2.8036 26 1 1.2097 -3.4247 2.6908 27 1 -0.6734 -5.0260 0.9101 28 1 0.5541 -5.6621 2.0255 29 1 1.4444 -6.9073 0.0995 30 1 4.4837 -8.0455 -3.1887 31 1 3.9727 -4.7030 -2.5783 32 1 3.1219 -2.6093 -1.6453 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128531512.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:25 Heat of formation + Delta-G solvation = -68.799709 kcal Electronic energy + Delta-G solvation = -17628.326904 eV Core-core repulsion = 14746.111900 eV Total energy + Delta-G solvation = -2882.215004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.74033 -38.91413 -35.96261 -35.35034 -33.85671 -31.98767 -29.75062 -28.92330 -26.01761 -24.51550 -22.70574 -21.83688 -20.68766 -19.02383 -17.50637 -17.22714 -16.51387 -15.88250 -15.04839 -14.89717 -14.53037 -14.07275 -13.55751 -13.15978 -12.93283 -12.76443 -12.54128 -12.17674 -12.00692 -11.59812 -11.31691 -11.16052 -10.97245 -10.82439 -10.62095 -10.41856 -10.19396 -9.80223 -9.69931 -9.44686 -8.79502 -7.99870 -6.85044 -6.66730 -4.04808 1.77012 2.45672 2.96191 3.03449 3.06963 3.42315 3.80361 3.82135 4.54941 4.66323 4.88136 5.47865 5.60523 5.73434 5.82925 5.90825 6.06408 6.19376 6.22578 6.43482 6.47817 6.58749 6.72419 6.80269 6.98101 7.02074 7.03733 7.09554 7.26431 7.36249 7.44152 7.63213 7.94532 8.33183 8.61825 8.94433 9.28881 10.28990 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.006727 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.015759 B = 4161.330790 C = 4959.940505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.034 3.966 3 Si 0.930 3.070 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.310 4.310 8 H 0.101 0.899 9 N -0.410 5.410 10 C 0.135 3.865 11 C -0.143 4.143 12 C -0.059 4.059 13 C -0.211 4.211 14 C 0.006 3.994 15 C -0.271 4.271 16 C 0.531 3.469 17 O -0.557 6.557 18 O -0.524 6.524 19 C -0.013 4.013 20 C -0.220 4.220 21 C 0.230 3.770 22 H 0.277 0.723 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.398 0.602 31 H 0.115 0.885 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -3.542 0.393 4.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.173 4.173 3 Si 0.756 3.244 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.439 4.439 8 H 0.119 0.881 9 N -0.089 5.089 10 C 0.012 3.988 11 C -0.182 4.182 12 C -0.096 4.096 13 C -0.217 4.217 14 C -0.014 4.014 15 C -0.276 4.276 16 C 0.382 3.618 17 O -0.451 6.451 18 O -0.334 6.334 19 C -0.033 4.033 20 C -0.243 4.243 21 C 0.106 3.894 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.254 0.746 31 H 0.133 0.867 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.619 -2.880 0.892 3.423 hybrid contribution 0.515 0.252 -0.385 0.690 sum 2.134 -2.629 0.506 3.424 Atomic orbital electron populations 1.69952 1.06222 1.28886 1.44245 1.25539 0.95639 1.00389 0.95716 0.85841 0.79456 0.80162 0.78976 1.19800 1.20392 1.18971 1.19760 0.94091 0.82669 1.47330 0.88092 1.42975 1.23680 1.03485 1.38798 1.21631 0.87573 0.97966 0.91664 1.22018 1.01701 0.96093 0.98353 1.20144 0.97162 0.97238 0.95060 1.18621 1.07036 0.91471 1.04563 1.20267 0.92164 0.96738 0.92250 1.18064 1.11236 0.89390 1.08932 1.21099 0.75086 0.89936 0.75723 1.90771 1.59370 1.33512 1.61442 1.84637 1.57009 1.39807 1.51970 1.20596 0.95425 0.91215 0.96064 1.20292 1.04867 0.98041 1.01133 1.18031 0.94666 0.85848 0.90866 0.91293 0.92180 0.88843 0.91529 0.91927 0.92214 0.92059 0.86826 0.74599 0.86738 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.93 11.10 55.49 0.62 -20.31 16 2 C 0.03 0.80 5.00 -17.45 -0.09 0.72 16 3 Si 0.93 18.26 29.58 -169.99 -5.03 13.23 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.31 -7.45 8.60 -15.11 -0.13 -7.58 16 8 H 0.10 2.37 6.89 -52.49 -0.36 2.00 16 9 N -0.41 -9.56 2.96 -112.52 -0.33 -9.89 16 10 C 0.13 2.88 4.95 -3.61 -0.02 2.86 16 11 C -0.14 -2.54 6.12 -26.58 -0.16 -2.70 16 12 C -0.06 -1.04 5.77 -27.98 -0.16 -1.20 16 13 C -0.21 -4.34 5.73 -104.78 -0.60 -4.94 16 14 C 0.01 0.12 9.15 -39.47 -0.36 -0.24 16 15 C -0.27 -5.45 5.87 -104.99 -0.62 -6.06 16 16 C 0.53 10.05 8.26 34.45 0.28 10.34 16 17 O -0.56 -11.65 17.12 -19.28 -0.33 -11.98 16 18 O -0.52 -7.93 12.67 -40.70 -0.52 -8.45 16 19 C -0.01 -0.25 9.57 -39.58 -0.38 -0.63 16 20 C -0.22 -4.71 9.12 -39.70 -0.36 -5.07 16 21 C 0.23 5.15 6.33 -83.77 -0.53 4.62 16 22 H 0.28 6.35 8.32 -40.82 -0.34 6.01 16 23 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.09 2.10 6.45 -51.93 -0.33 1.77 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 29 H 0.11 2.17 7.63 -52.49 -0.40 1.77 16 30 H 0.40 3.98 9.11 45.56 0.42 4.39 16 31 H 0.11 2.00 7.61 -52.49 -0.40 1.60 16 32 H 0.12 2.59 6.57 -52.49 -0.34 2.25 16 LS Contribution 272.47 15.07 4.11 4.11 Total: -1.00 -27.54 272.47 -7.28 -34.82 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -2.67 Total: 8.37 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -3.12 Total: -9.90 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.28 Total: -30.20 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.85 Total: -20.43 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.54 -7.28 -34.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128531512.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.979 kcal (2) G-P(sol) polarization free energy of solvation -27.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds