Wall clock time and date at job start Mon Mar 30 2020 04:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.73096 * 2 1 4 4 C 1.53181 * 109.60244 * 239.59507 * 2 1 3 5 5 N 1.46470 * 109.89813 * 177.60465 * 4 2 1 6 6 C 1.46896 * 110.99973 * 196.99678 * 5 4 2 7 7 C 1.50696 * 109.47452 * 300.19171 * 6 5 4 8 8 H 1.07999 * 119.99822 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00126 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99707 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99956 * 0.27447 * 9 7 6 12 12 H 1.48503 * 109.47407 * 269.72718 * 11 9 7 13 13 H 1.48505 * 109.47281 * 29.72474 * 11 9 7 14 14 H 1.48501 * 109.47274 * 149.72572 * 11 9 7 15 15 C 1.46472 * 112.45991 * 71.96379 * 5 4 2 16 16 C 1.53181 * 109.90114 * 288.02915 * 15 5 4 17 17 S 1.81814 * 109.60249 * 120.40306 * 2 1 3 18 18 O 1.42101 * 108.70098 * 57.82182 * 17 2 1 19 19 O 1.42095 * 108.70544 * 286.33300 * 17 2 1 20 20 H 1.09004 * 109.47254 * 299.59260 * 1 2 3 21 21 H 1.08998 * 109.47337 * 59.60034 * 1 2 3 22 22 H 1.09005 * 109.46800 * 179.59775 * 1 2 3 23 23 H 1.09001 * 109.47436 * 180.40356 * 3 2 1 24 24 H 1.09002 * 109.47414 * 300.40800 * 3 2 1 25 25 H 1.09008 * 109.47396 * 60.40406 * 3 2 1 26 26 H 1.09001 * 109.39977 * 57.47747 * 4 2 1 27 27 H 1.09000 * 109.40018 * 297.73822 * 4 2 1 28 28 H 1.08996 * 109.47227 * 180.18813 * 6 5 4 29 29 H 1.09004 * 109.46764 * 60.19588 * 6 5 4 30 30 H 0.97005 * 119.99656 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.40479 * 48.17191 * 15 5 4 32 32 H 1.09009 * 109.39471 * 167.90864 * 15 5 4 33 33 H 1.08996 * 109.60717 * 182.39161 * 16 15 5 34 34 H 1.08994 * 109.60960 * 302.72606 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0466 1.4401 0.0000 4 6 2.0440 -0.7303 -1.2446 5 7 3.5075 -0.6847 -1.2806 6 6 4.0113 -1.0055 -2.6226 7 6 3.5575 -2.3886 -3.0123 8 1 2.9546 -2.9710 -2.3313 9 6 3.9110 -2.9102 -4.2388 10 7 3.5144 -4.1171 -4.5790 11 14 4.9589 -1.9054 -5.4141 12 1 4.0781 -1.0982 -6.2961 13 1 5.8448 -1.0010 -4.6379 14 1 5.7869 -2.8180 -6.2429 15 6 4.1194 -1.5500 -0.2695 16 6 3.9218 -0.9446 1.1236 17 16 2.1400 -0.8668 1.4772 18 8 1.6176 -2.1883 1.4783 19 8 1.9363 -0.0343 2.6107 20 1 -0.3634 0.5075 0.8936 21 1 -0.3634 0.5200 -0.8863 22 1 -0.3633 -1.0277 -0.0072 23 1 3.1365 1.4353 -0.0072 24 1 1.6796 1.9578 -0.8863 25 1 1.6915 1.9536 0.8936 26 1 1.6447 -0.2491 -2.1374 27 1 1.7146 -1.7690 -1.2167 28 1 5.1006 -0.9677 -2.6204 29 1 3.6241 -0.2807 -3.3388 30 1 3.7628 -4.4840 -5.4420 31 1 3.6535 -2.5348 -0.3058 32 1 5.1857 -1.6476 -0.4739 33 1 4.4152 -1.5700 1.8676 34 1 4.3463 0.0590 1.1499 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155244403.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:25 Heat of formation + Delta-G solvation = -66.718994 kcal Electronic energy + Delta-G solvation = -17430.971066 eV Core-core repulsion = 14684.290240 eV Total energy + Delta-G solvation = -2746.680827 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.37561 -36.78230 -35.80844 -34.73951 -32.70897 -30.93982 -27.51899 -27.27937 -25.34526 -22.85432 -21.39705 -20.27987 -18.19750 -17.13409 -16.31778 -16.18671 -15.41601 -15.17566 -14.83078 -14.41360 -13.50468 -13.48030 -13.02739 -12.78480 -12.66256 -12.32966 -12.19917 -11.96789 -11.77598 -11.74948 -11.49281 -11.37124 -11.24586 -10.93744 -10.81827 -10.52550 -10.25541 -10.04534 -9.66210 -9.58842 -8.71618 -7.58872 -6.21418 -4.24079 0.27619 2.88150 3.18673 3.27513 3.28622 3.82521 4.10329 4.28272 4.54278 4.67182 4.79771 4.99537 5.06918 5.15821 5.35084 5.53312 5.59620 5.70681 5.80657 5.87968 6.01595 6.10614 6.20302 6.30070 6.35801 6.40792 6.70706 6.87454 7.31927 7.70082 7.74580 8.29622 8.80187 9.39286 10.91121 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.036373 B = 0.007417 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.616449 B = 3773.988719 C = 3846.212226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.520 4.520 3 C -0.123 4.123 4 C 0.082 3.918 5 N -0.547 5.547 6 C 0.161 3.839 7 C -0.563 4.563 8 H 0.078 0.922 9 C 0.075 3.925 10 N -0.892 5.892 11 Si 0.879 3.121 12 H -0.276 1.276 13 H -0.263 1.263 14 H -0.286 1.286 15 C 0.072 3.928 16 C -0.594 4.594 17 S 2.405 3.595 18 O -0.940 6.940 19 O -0.953 6.953 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 9.631 8.231 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.612 4.612 3 C -0.181 4.181 4 C -0.047 4.047 5 N -0.270 5.270 6 C 0.035 3.965 7 C -0.602 4.602 8 H 0.096 0.904 9 C -0.129 4.129 10 N -0.530 5.530 11 Si 0.705 3.295 12 H -0.201 1.201 13 H -0.188 1.188 14 H -0.212 1.212 15 C -0.058 4.058 16 C -0.725 4.725 17 S 2.589 3.411 18 O -0.937 6.937 19 O -0.950 6.950 20 H 0.085 0.915 21 H 0.100 0.900 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.147 0.853 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.511 9.628 8.947 13.230 hybrid contribution 0.765 -0.210 -1.618 1.802 sum -0.745 9.418 7.329 11.957 Atomic orbital electron populations 1.21653 0.89969 1.03789 1.03888 1.29660 1.05259 1.09029 1.17301 1.21579 1.02554 0.90851 1.03105 1.21760 0.88983 0.99162 0.94843 1.61657 1.05158 1.52673 1.07523 1.20213 0.95996 0.96033 0.84259 1.21705 1.35067 1.00138 1.03275 0.90430 1.24968 0.95288 0.94718 0.97887 1.69927 1.45258 1.15768 1.22028 0.86809 0.81006 0.80335 0.81309 1.20133 1.18797 1.21199 1.21592 1.02819 0.94867 0.86495 1.30222 1.24324 1.10935 1.06996 1.08506 0.79292 0.75955 0.77304 1.93573 1.77364 1.35968 1.86816 1.93522 1.84973 1.69481 1.47045 0.91509 0.90041 0.90843 0.90241 0.90788 0.91856 0.88861 0.91893 0.94711 0.95067 0.92489 0.91936 0.88890 0.85299 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.49 37.16 0.32 -1.37 16 2 C -0.52 -7.39 0.83 -90.53 -0.08 -7.46 16 3 C -0.12 -1.50 8.10 37.16 0.30 -1.20 16 4 C 0.08 1.41 3.51 -3.96 -0.01 1.40 16 5 N -0.55 -9.88 3.74 -236.57 -0.89 -10.76 16 6 C 0.16 3.47 4.08 -4.98 -0.02 3.45 16 7 C -0.56 -14.65 8.49 -34.44 -0.29 -14.94 16 8 H 0.08 2.21 6.40 -52.49 -0.34 1.87 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 11 Si 0.88 20.21 27.47 -169.99 -4.67 15.54 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 13 H -0.26 -5.75 6.53 56.52 0.37 -5.38 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 15 C 0.07 1.22 4.88 -3.96 -0.02 1.21 16 16 C -0.59 -8.07 6.18 37.25 0.23 -7.84 16 17 S 2.41 37.23 4.28 -107.50 -0.46 36.77 16 18 O -0.94 -17.81 18.06 -57.80 -1.04 -18.85 16 19 O -0.95 -16.07 17.68 -57.80 -1.02 -17.09 16 20 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.08 0.95 6.47 -51.93 -0.34 0.61 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.70 7.93 -51.92 -0.41 0.29 16 26 H 0.09 1.59 7.92 -51.93 -0.41 1.18 16 27 H 0.06 1.23 6.89 -51.93 -0.36 0.87 16 28 H 0.03 0.75 6.98 -51.93 -0.36 0.39 16 29 H 0.03 0.67 7.51 -51.93 -0.39 0.28 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.06 1.20 7.21 -51.93 -0.37 0.83 16 32 H 0.09 1.53 7.83 -51.92 -0.41 1.13 16 33 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.14 1.55 7.40 -51.93 -0.38 1.17 16 LS Contribution 277.52 15.07 4.18 4.18 Total: -1.00 -31.72 277.52 -7.85 -39.56 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.05 Total: 0.90 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 0.33 Total: -24.82 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.11 Total: -36.19 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -2.07 Total: -35.95 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Atomic # 16 Polarization: 37.23 SS G_CDS: -0.46 Total: 36.77 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.72 -7.85 -39.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155244403.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.154 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds