Wall clock time and date at job start Mon Mar 30 2020 03:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99656 * 2 1 4 4 H 1.48510 * 109.47191 * 239.99618 * 3 2 1 5 5 H 1.48497 * 109.47668 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47281 * 119.99682 * 3 2 1 7 7 C 1.37872 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99655 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00538 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.57934 * 298.75095 * 9 7 2 11 11 C 1.54089 * 110.70530 * 176.14560 * 9 7 2 12 12 N 1.47090 * 103.78032 * 241.60607 * 11 9 7 13 13 C 1.46499 * 125.56311 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.46992 * 269.71531 * 13 12 11 15 15 C 1.38233 * 120.00099 * 269.72651 * 14 13 12 16 16 C 1.38239 * 119.99655 * 179.76882 * 15 14 13 17 17 C 1.38230 * 120.00228 * 0.50243 * 16 15 14 18 18 C 1.38238 * 119.99995 * 359.75228 * 17 16 15 19 19 C 1.38238 * 120.00072 * 359.97438 * 18 17 16 20 20 C 1.34007 * 108.87957 * 359.66078 * 12 11 9 21 21 O 1.21503 * 123.07437 * 180.20880 * 20 12 11 22 22 O 1.33776 * 113.85451 * 0.22560 * 20 12 11 23 23 H 0.97005 * 120.00202 * 0.02562 * 1 2 3 24 24 H 1.09004 * 110.65731 * 122.98769 * 11 9 7 25 25 H 1.09002 * 110.46691 * 0.13560 * 11 9 7 26 26 H 1.09002 * 109.47391 * 149.71521 * 13 12 11 27 27 H 1.09001 * 109.46813 * 29.71578 * 13 12 11 28 28 H 1.08003 * 119.99927 * 359.97438 * 15 14 13 29 29 H 1.08000 * 119.99431 * 180.23215 * 16 15 14 30 30 H 1.07997 * 120.00220 * 179.73036 * 17 16 15 31 31 H 1.08002 * 119.99952 * 179.97438 * 18 17 16 32 32 H 1.07991 * 120.00062 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6341 -2.5853 0.8949 11 6 2.2242 -3.6900 -0.0957 12 7 1.8476 -4.3493 -1.3555 13 6 2.4795 -5.5482 -1.9118 14 6 3.6187 -5.1439 -2.8118 15 6 3.3923 -4.9266 -4.1580 16 6 4.4364 -4.5511 -4.9826 17 6 5.7087 -4.4031 -4.4629 18 6 5.9361 -4.6255 -3.1176 19 6 4.8910 -4.9955 -2.2919 20 6 0.8275 -3.6784 -1.9079 21 8 0.3099 -4.0053 -2.9574 22 8 0.4314 -2.6157 -1.1984 23 1 -0.4851 0.8401 -0.0004 24 1 2.0872 -4.3676 0.7470 25 1 3.2547 -3.3374 -0.1412 26 1 1.7452 -6.1127 -2.4864 27 1 2.8601 -6.1681 -1.1000 28 1 2.3992 -5.0470 -4.5649 29 1 4.2588 -4.3777 -6.0337 30 1 6.5252 -4.1139 -5.1080 31 1 6.9303 -4.5102 -2.7117 32 1 5.0687 -5.1696 -1.2411 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221085199.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:31 Heat of formation + Delta-G solvation = -67.808537 kcal Electronic energy + Delta-G solvation = -17705.871289 eV Core-core repulsion = 14823.699265 eV Total energy + Delta-G solvation = -2882.172024 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09892 -40.02467 -38.02783 -36.34375 -34.84378 -32.76024 -31.76757 -30.76777 -27.75552 -26.46127 -23.75723 -23.25644 -22.84629 -21.40893 -19.19296 -18.26602 -17.65416 -17.26356 -17.09303 -16.48686 -16.11216 -16.02561 -15.40262 -14.78192 -14.70302 -14.42084 -14.25842 -13.83123 -13.40630 -13.29674 -13.02496 -12.80262 -12.74365 -12.38491 -12.14717 -11.88243 -11.79431 -11.42976 -10.96479 -10.76772 -9.83923 -9.79658 -9.64475 -8.30924 -6.56516 0.35172 0.52192 1.40331 1.42919 1.51167 1.87821 1.98842 2.33872 2.82935 2.99048 3.40239 3.80001 3.85942 3.86582 4.16805 4.17595 4.29310 4.40537 4.56272 4.60235 4.71055 4.74540 4.98318 5.10064 5.17117 5.24688 5.56591 5.57226 5.61763 5.63120 5.72115 5.84371 6.13382 6.51868 6.87657 7.20314 7.26333 8.76435 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.007359 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.346562 B = 3803.883088 C = 4377.772518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.183 3.817 10 H 0.061 0.939 11 C 0.089 3.911 12 N -0.619 5.619 13 C 0.183 3.817 14 C -0.124 4.124 15 C -0.121 4.121 16 C -0.137 4.137 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.106 4.106 20 C 0.625 3.375 21 O -0.597 6.597 22 O -0.350 6.350 23 H 0.268 0.732 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.220 -10.118 -1.347 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.175 1.175 7 C -0.600 4.600 8 H 0.101 0.899 9 C 0.130 3.870 10 H 0.079 0.921 11 C -0.034 4.034 12 N -0.366 5.366 13 C 0.063 3.937 14 C -0.126 4.126 15 C -0.140 4.140 16 C -0.155 4.155 17 C -0.139 4.139 18 C -0.146 4.146 19 C -0.124 4.124 20 C 0.381 3.619 21 O -0.490 6.490 22 O -0.259 6.259 23 H 0.077 0.923 24 H 0.129 0.871 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.147 0.853 28 H 0.121 0.879 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.603 -10.022 -1.852 16.208 hybrid contribution -0.299 1.055 -0.270 1.129 sum 12.304 -8.966 -2.122 15.372 Atomic orbital electron populations 1.70144 1.08029 1.28527 1.46642 1.26067 0.95603 1.03783 0.92453 0.85465 0.78348 0.77539 0.79484 1.19971 1.20960 1.17506 1.21606 0.93759 0.90398 1.54268 0.89853 1.21640 0.87982 0.94905 0.82451 0.92082 1.23003 1.00559 0.93763 0.86042 1.48196 1.34068 1.30052 1.24305 1.20350 0.92350 0.83748 0.97222 1.20398 0.95828 1.02005 0.94336 1.21250 0.98961 0.99379 0.94437 1.21387 0.93401 1.00203 1.00501 1.21513 0.97000 0.99083 0.96318 1.21519 1.00096 0.99166 0.93785 1.21348 0.91643 0.98513 1.00910 1.19236 0.79972 0.79317 0.83399 1.90798 1.63232 1.71608 1.23321 1.87606 1.57703 1.42264 1.38291 0.92262 0.87140 0.88927 0.90073 0.85308 0.87878 0.85009 0.83615 0.83232 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.79 12.95 21.45 0.28 -52.51 16 2 C 0.03 1.37 5.42 84.65 0.46 1.83 16 3 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.56 -29.40 8.84 25.60 0.23 -29.17 16 8 H 0.08 4.03 7.39 -2.91 -0.02 4.01 16 9 C 0.18 8.89 3.67 30.21 0.11 9.00 16 10 H 0.06 3.04 8.14 -2.39 -0.02 3.03 16 11 C 0.09 3.14 7.34 86.64 0.64 3.78 16 12 N -0.62 -23.62 2.95 -955.81 -2.82 -26.44 16 13 C 0.18 5.29 6.14 85.63 0.53 5.81 16 14 C -0.12 -3.64 5.46 -19.86 -0.11 -3.75 16 15 C -0.12 -3.87 9.70 22.27 0.22 -3.66 16 16 C -0.14 -3.69 10.05 22.27 0.22 -3.47 16 17 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 18 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 19 C -0.11 -2.54 9.70 22.27 0.22 -2.32 16 20 C 0.62 31.50 8.85 129.91 1.15 32.65 16 21 O -0.60 -32.84 17.54 19.68 0.35 -32.50 16 22 O -0.35 -19.79 10.34 -47.36 -0.49 -20.28 16 23 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 24 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 25 H 0.09 3.07 7.47 -2.39 -0.02 3.05 16 26 H 0.08 2.46 7.87 -2.39 -0.02 2.44 16 27 H 0.13 2.55 8.09 -2.39 -0.02 2.53 16 28 H 0.10 3.65 8.06 -2.91 -0.02 3.62 16 29 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.15 2.68 8.06 -2.92 -0.02 2.66 16 Total: -1.00 -72.42 285.59 4.56 -67.86 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.12 Total: 14.23 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 4.10 Total: 5.63 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -2.54 Total: -78.95 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.14 Total: -52.77 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -72.42 4.56 -67.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221085199.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.052 kcal (2) G-P(sol) polarization free energy of solvation -72.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds