Wall clock time and date at job start Mon Mar 30 2020 03:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.39746 * 123.89257 * 2 1 4 4 C 1.39357 * 130.76000 * 359.96119 * 3 2 1 5 5 C 1.37910 * 120.20259 * 179.97438 * 4 3 2 6 6 C 1.38745 * 120.31468 * 0.02972 * 5 4 3 7 7 O 1.35970 * 120.14700 * 180.02562 * 6 5 4 8 8 C 1.38834 * 119.71082 * 359.97438 * 6 5 4 9 9 C 1.37668 * 119.87099 * 0.02562 * 8 6 5 10 10 C 1.51144 * 132.78426 * 180.02562 * 9 8 6 11 11 C 1.52999 * 110.50164 * 298.63043 * 10 9 8 12 12 C 1.50707 * 110.50039 * 61.31763 * 10 9 8 13 13 H 1.07992 * 120.00211 * 357.00283 * 12 10 9 14 14 C 1.37880 * 119.99678 * 176.99978 * 12 10 9 15 15 N 1.31512 * 119.99990 * 6.39698 * 14 12 10 16 16 Si 1.86794 * 119.99988 * 186.39180 * 14 12 10 17 17 H 1.48504 * 109.47136 * 94.98862 * 16 14 12 18 18 H 1.48501 * 109.47500 * 214.98766 * 16 14 12 19 19 H 1.48500 * 109.47484 * 334.99034 * 16 14 12 20 20 C 1.34368 * 123.89637 * 179.97438 * 2 1 3 21 21 O 1.21292 * 126.43171 * 0.02949 * 20 2 1 22 22 H 1.08999 * 109.47331 * 90.00560 * 1 2 3 23 23 H 1.09002 * 109.46791 * 210.00030 * 1 2 3 24 24 H 1.08993 * 109.47498 * 329.99772 * 1 2 3 25 25 H 1.07995 * 119.90296 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.84414 * 179.74756 * 5 4 3 27 27 H 0.96701 * 113.99755 * 89.98971 * 7 6 5 28 28 H 1.08001 * 120.06259 * 180.02562 * 8 6 5 29 29 H 1.08995 * 109.47298 * 303.86221 * 11 10 9 30 30 H 1.08999 * 109.47420 * 63.86351 * 11 10 9 31 31 H 1.09007 * 109.46696 * 183.86141 * 11 10 9 32 32 H 0.96999 * 119.99895 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2442 1.1600 0.0000 4 6 1.8754 2.5039 -0.0007 5 6 2.8411 3.4884 0.0000 6 6 4.1866 3.1495 0.0008 7 8 5.1359 4.1230 0.0020 8 6 4.5594 1.8122 0.0014 9 6 3.5935 0.8312 0.0007 10 6 3.6637 -0.6786 0.0016 11 6 4.3761 -1.1827 -1.2551 12 6 4.3635 -1.1738 1.2412 13 1 4.7729 -0.4679 1.9485 14 6 4.4808 -2.5280 1.4721 15 7 4.0959 -3.3874 0.5540 16 14 5.1866 -3.1420 3.0889 17 1 4.0786 -3.4365 4.0327 18 1 5.9733 -4.3783 2.8479 19 1 6.0692 -2.0995 3.6715 20 6 2.2143 -1.1153 0.0005 21 8 1.8060 -2.2574 0.0005 22 1 -0.3634 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5138 25 1 0.8301 2.7753 -0.0010 26 1 2.5488 4.5280 -0.0047 27 1 5.4097 4.4041 0.8858 28 1 5.6050 1.5420 0.0025 29 1 3.8690 -0.7973 -2.1395 30 1 5.4100 -0.8375 -1.2498 31 1 4.3570 -2.2725 -1.2712 32 1 4.1782 -4.3401 0.7166 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238324035.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:41 Heat of formation + Delta-G solvation = -53.326619 kcal Electronic energy + Delta-G solvation = -18239.253828 eV Core-core repulsion = 15357.709787 eV Total energy + Delta-G solvation = -2881.544041 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.30423 -39.72955 -37.84873 -36.16493 -35.54049 -33.46797 -30.68896 -29.81134 -28.04999 -27.39592 -24.70110 -23.17480 -22.04946 -20.92236 -19.04333 -18.72554 -17.49967 -17.13566 -16.70902 -16.48346 -16.06929 -15.56124 -15.06336 -14.83345 -14.65939 -14.09121 -13.82111 -13.47081 -13.32437 -13.21764 -12.93252 -12.91283 -12.76578 -12.55827 -12.29722 -11.95346 -11.59938 -11.00338 -10.95110 -10.60396 -10.29079 -9.67739 -8.53817 -8.08043 -6.28427 0.33963 0.52552 1.38234 1.40167 1.50398 1.93371 2.08519 2.41001 2.87818 3.14969 3.39914 3.79275 3.92368 4.13204 4.34462 4.43721 4.48801 4.54275 4.67778 4.74353 4.84048 5.00929 5.06195 5.20292 5.30363 5.45101 5.57041 5.64972 5.78528 5.88884 6.02547 6.15284 6.33804 6.72258 7.02618 7.37643 7.47993 8.89290 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.009742 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.384830 B = 2873.423321 C = 3619.089323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.574 5.574 3 C 0.115 3.885 4 C -0.122 4.122 5 C -0.113 4.113 6 C 0.078 3.922 7 O -0.502 6.502 8 C -0.106 4.106 9 C -0.110 4.110 10 C 0.069 3.931 11 C -0.108 4.108 12 C -0.533 4.533 13 H 0.063 0.937 14 C 0.025 3.975 15 N -0.865 5.865 16 Si 0.955 3.045 17 H -0.285 1.285 18 H -0.279 1.279 19 H -0.260 1.260 20 C 0.519 3.481 21 O -0.523 6.523 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.156 0.844 26 H 0.166 0.834 27 H 0.406 0.594 28 H 0.122 0.878 29 H 0.020 0.980 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 14.137 0.285 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.298 5.298 3 C 0.020 3.980 4 C -0.143 4.143 5 C -0.132 4.132 6 C 0.032 3.968 7 O -0.314 6.314 8 C -0.125 4.125 9 C -0.113 4.113 10 C 0.065 3.935 11 C -0.166 4.166 12 C -0.571 4.571 13 H 0.081 0.919 14 C -0.180 4.180 15 N -0.499 5.499 16 Si 0.780 3.220 17 H -0.212 1.212 18 H -0.205 1.205 19 H -0.184 1.184 20 C 0.309 3.691 21 O -0.396 6.396 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.174 0.826 26 H 0.184 0.816 27 H 0.264 0.736 28 H 0.140 0.860 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.834 13.134 -0.380 13.687 hybrid contribution 0.318 -1.038 1.258 1.661 sum -3.516 12.096 0.878 12.627 Atomic orbital electron populations 1.21878 0.77394 1.04084 1.03067 1.46234 1.07596 1.05660 1.70352 1.18615 0.90266 0.88319 1.00848 1.20460 1.01466 0.87365 1.04982 1.21264 0.90683 1.00562 1.00691 1.18203 0.88589 0.86254 1.03711 1.84783 1.57262 1.54186 1.35204 1.20554 0.99190 0.91546 1.01222 1.20182 0.93093 0.95854 1.02129 1.17797 0.90145 0.88299 0.97215 1.21490 0.98422 1.03063 0.93655 1.20798 1.38457 0.91820 1.06016 0.91909 1.25804 0.95311 0.97178 0.99720 1.70116 1.44178 1.01945 1.33681 0.85599 0.78247 0.78264 0.79926 1.21178 1.20466 1.18352 1.21954 0.90531 0.83608 0.72967 1.90601 1.79320 1.20573 1.49134 0.91074 0.92031 0.87659 0.82598 0.81641 0.73620 0.86029 0.96070 0.93284 0.91374 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.36 10.77 127.77 1.38 3.74 16 2 N -0.57 -23.91 3.14 -654.01 -2.05 -25.96 16 3 C 0.12 4.35 6.70 38.30 0.26 4.60 16 4 C -0.12 -3.33 9.73 22.46 0.22 -3.11 16 5 C -0.11 -2.78 9.96 22.31 0.22 -2.56 16 6 C 0.08 2.25 6.72 22.53 0.15 2.40 16 7 O -0.50 -11.96 13.51 -93.21 -1.26 -13.22 16 8 C -0.11 -3.87 9.98 22.28 0.22 -3.65 16 9 C -0.11 -4.67 4.94 -19.70 -0.10 -4.77 16 10 C 0.07 3.53 0.66 -54.06 -0.04 3.49 16 11 C -0.11 -5.47 8.39 71.98 0.60 -4.87 16 12 C -0.53 -29.45 8.08 25.60 0.21 -29.25 16 13 H 0.06 3.40 7.78 -2.91 -0.02 3.38 16 14 C 0.02 1.38 5.13 84.66 0.43 1.81 16 15 N -0.87 -51.36 9.27 21.45 0.20 -51.17 16 16 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 20 C 0.52 27.21 6.69 87.94 0.59 27.80 16 21 O -0.52 -31.17 15.67 -3.07 -0.05 -31.21 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.06 2.06 7.95 -2.39 -0.02 2.04 16 24 H 0.10 2.37 7.61 -2.39 -0.02 2.35 16 25 H 0.16 3.08 7.70 -2.91 -0.02 3.05 16 26 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 27 H 0.41 5.60 9.06 -74.06 -0.67 4.93 16 28 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.07 3.85 6.01 -2.38 -0.01 3.84 16 32 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -72.31 275.18 3.49 -68.82 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.48 Total: 10.80 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 4.15 Total: -4.36 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -1.85 Total: -77.13 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -1.31 Total: -44.43 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.31 3.49 -68.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238324035.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.497 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds