Wall clock time and date at job start Mon Mar 30 2020 03:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09006 * 110.91848 * 54.29685 * 10 9 7 12 12 C 1.54811 * 111.04411 * 178.28162 * 10 9 7 13 13 N 1.47593 * 102.00730 * 141.52437 * 12 10 9 14 14 C 1.29730 * 108.43596 * 344.93990 * 13 12 10 15 15 C 1.47823 * 123.09673 * 179.61549 * 14 13 12 16 16 C 1.39612 * 120.07963 * 179.74229 * 15 14 13 17 17 C 1.37774 * 119.91695 * 179.72152 * 16 15 14 18 18 C 1.38946 * 120.08091 * 0.58001 * 17 16 15 19 19 O 1.35764 * 119.91838 * 179.72071 * 18 17 16 20 20 C 1.38928 * 120.15923 * 359.69742 * 18 17 16 21 21 C 1.37777 * 120.08595 * 0.02562 * 20 18 17 22 22 O 1.35008 * 113.82254 * 359.63251 * 14 13 12 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.08996 * 110.92926 * 259.70373 * 12 10 9 27 27 H 1.09000 * 110.92286 * 23.31903 * 12 10 9 28 28 H 1.07994 * 120.04314 * 0.02562 * 16 15 14 29 29 H 1.08004 * 119.96406 * 180.30049 * 17 16 15 30 30 H 0.96704 * 114.00038 * 269.97760 * 19 18 17 31 31 H 1.08000 * 119.95911 * 180.02562 * 20 18 17 32 32 H 1.07996 * 120.04428 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9499 -3.5717 0.8274 12 6 1.5089 -5.0231 0.0439 13 7 2.3362 -5.8487 -0.8575 14 6 3.1051 -5.0615 -1.5445 15 6 4.0764 -5.5529 -2.5447 16 6 4.8697 -4.6483 -3.2529 17 6 5.7779 -5.1104 -4.1802 18 6 5.8963 -6.4739 -4.4196 19 8 6.7884 -6.9252 -5.3382 20 6 5.1044 -7.3766 -3.7209 21 6 4.1980 -6.9223 -2.7880 22 8 2.9371 -3.7520 -1.2619 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 1.5065 -5.4325 1.0540 27 1 0.4924 -4.9280 -0.3380 28 1 4.7751 -3.5881 -3.0706 29 1 6.3955 -4.4116 -4.7250 30 1 6.4283 -6.9996 -6.2326 31 1 5.1994 -8.4358 -3.9093 32 1 3.5831 -7.6246 -2.2450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260712279.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:40 Heat of formation + Delta-G solvation = -64.683400 kcal Electronic energy + Delta-G solvation = -16928.516144 eV Core-core repulsion = 14046.479636 eV Total energy + Delta-G solvation = -2882.036508 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.25557 -40.56971 -37.77214 -35.93703 -34.68487 -33.15070 -32.09307 -30.90481 -27.98782 -25.33209 -24.34408 -23.64218 -22.77975 -21.37506 -19.41718 -19.14059 -18.32854 -17.67993 -16.62323 -16.37434 -16.24055 -15.63265 -15.60445 -15.05415 -14.71920 -14.49123 -14.21769 -14.00418 -13.71781 -13.24464 -13.05780 -12.96821 -12.74677 -12.49181 -12.20635 -11.93364 -11.56654 -11.39091 -10.71600 -10.62073 -10.51381 -10.10056 -9.44888 -8.74734 -6.45662 -0.38678 0.30209 1.26428 1.51035 1.59058 1.79112 2.12171 2.53026 2.63760 2.93121 3.11217 3.21987 3.54935 3.83483 3.87360 3.94393 4.12530 4.28445 4.34036 4.41964 4.49618 4.63214 4.74965 4.92027 4.98889 5.05265 5.22892 5.29766 5.36060 5.39752 5.69747 5.85071 6.08371 6.47029 6.55635 6.83489 7.33742 8.66408 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.005061 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.168420 B = 5531.167252 C = 6362.610638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.034 4.034 3 Si 1.118 2.882 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.614 4.614 8 H 0.048 0.952 9 C 0.018 3.982 10 C 0.071 3.929 11 H 0.084 0.916 12 C -0.001 4.001 13 N -0.553 5.553 14 C 0.331 3.669 15 C -0.078 4.078 16 C -0.069 4.069 17 C -0.151 4.151 18 C 0.138 3.862 19 O -0.502 6.502 20 C -0.148 4.148 21 C -0.049 4.049 22 O -0.345 6.345 23 H 0.256 0.744 24 H 0.026 0.974 25 H -0.005 1.005 26 H 0.118 0.882 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.155 0.845 30 H 0.417 0.583 31 H 0.163 0.837 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 -13.980 -9.209 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.231 4.231 3 Si 0.938 3.062 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.652 4.652 8 H 0.066 0.934 9 C -0.019 4.019 10 C 0.014 3.986 11 H 0.102 0.898 12 C -0.130 4.130 13 N -0.289 5.289 14 C 0.109 3.891 15 C -0.079 4.079 16 C -0.089 4.089 17 C -0.169 4.169 18 C 0.092 3.908 19 O -0.317 6.317 20 C -0.166 4.166 21 C -0.069 4.069 22 O -0.248 6.248 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.013 0.987 26 H 0.136 0.864 27 H 0.104 0.896 28 H 0.146 0.854 29 H 0.173 0.827 30 H 0.278 0.722 31 H 0.181 0.819 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.388 -13.019 -8.652 19.340 hybrid contribution -0.733 -0.694 0.039 1.010 sum 10.655 -13.713 -8.613 19.385 Atomic orbital electron populations 1.70935 1.07840 1.29872 1.48460 1.27413 0.96546 1.06721 0.92470 0.82932 0.74164 0.71034 0.78050 1.20594 1.19152 1.19729 1.22289 0.94522 0.92879 1.55490 0.93351 1.19230 0.93786 0.93001 0.95876 1.24126 0.94035 0.97184 0.83288 0.89773 1.24121 0.98690 0.89914 1.00302 1.74922 1.10338 1.30371 1.13282 1.24027 0.91861 0.80491 0.92739 1.17989 0.97332 0.94942 0.97687 1.21275 0.93692 0.99930 0.93994 1.21537 0.99403 0.95941 1.00031 1.18718 0.88888 0.90854 0.92312 1.84715 1.37328 1.87289 1.22355 1.21586 0.95574 1.01761 0.97714 1.21190 0.96843 0.92906 0.95915 1.87111 1.73617 1.24779 1.39336 0.93466 0.95547 0.98657 0.86350 0.89594 0.85439 0.82727 0.72170 0.81900 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.65 21.45 0.29 -57.57 16 2 C -0.03 -1.97 5.46 84.65 0.46 -1.51 16 3 Si 1.12 50.56 29.90 68.60 2.05 52.61 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.61 -35.62 9.02 25.60 0.23 -35.39 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.02 0.96 4.00 29.85 0.12 1.08 16 10 C 0.07 3.12 3.65 31.21 0.11 3.24 16 11 H 0.08 3.64 8.14 -2.38 -0.02 3.62 16 12 C 0.00 -0.04 7.68 86.79 0.67 0.63 16 13 N -0.55 -20.54 11.14 -450.88 -5.02 -25.56 16 14 C 0.33 12.55 7.59 87.54 0.66 13.21 16 15 C -0.08 -2.37 5.87 -20.08 -0.12 -2.49 16 16 C -0.07 -1.89 9.66 22.49 0.22 -1.67 16 17 C -0.15 -3.15 9.97 22.33 0.22 -2.92 16 18 C 0.14 2.53 6.71 22.60 0.15 2.68 16 19 O -0.50 -6.97 13.49 -90.91 -1.23 -8.20 16 20 C -0.15 -2.73 9.97 22.33 0.22 -2.51 16 21 C -0.05 -1.18 9.63 22.49 0.22 -0.96 16 22 O -0.34 -15.49 10.30 -82.80 -0.85 -16.35 16 23 H 0.26 15.95 7.22 -92.71 -0.67 15.28 16 24 H 0.03 1.40 8.01 -2.39 -0.02 1.38 16 25 H 0.00 -0.28 8.01 -2.38 -0.02 -0.30 16 26 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 27 H 0.09 3.24 7.91 -2.39 -0.02 3.22 16 28 H 0.13 3.79 7.76 -2.91 -0.02 3.77 16 29 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.42 1.49 9.06 -74.05 -0.67 0.82 16 31 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.14 3.35 7.70 -2.91 -0.02 3.33 16 Total: -1.00 -71.59 284.85 -1.02 -72.61 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.57 Total: 9.07 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 3.17 Total: -26.62 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -4.73 Total: -83.13 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -2.08 Total: -24.54 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.61 kcal Total: -71.59 -1.02 -72.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260712279.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.930 kcal (2) G-P(sol) polarization free energy of solvation -71.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds