Wall clock time and date at job start Mon Mar 30 2020 03:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 110.83070 * 300.42188 * 9 7 2 11 11 C 1.54842 * 110.94309 * 176.69402 * 9 7 2 12 12 O 1.44277 * 101.19778 * 218.60217 * 11 9 7 13 13 C 1.34599 * 107.66074 * 24.64551 * 12 11 9 14 14 C 1.50699 * 122.93339 * 162.79449 * 13 12 11 15 15 C 1.50712 * 109.46980 * 179.97438 * 14 13 12 16 16 C 1.38286 * 119.96608 * 269.72725 * 15 14 13 17 17 C 1.38249 * 120.10508 * 179.72686 * 16 15 14 18 18 C 1.38169 * 120.05700 * 0.53991 * 17 16 15 19 19 C 1.38710 * 119.94087 * 359.73805 * 18 17 16 20 20 O 1.35905 * 120.05344 * 179.97438 * 19 18 17 21 21 C 1.38117 * 119.96996 * 89.99742 * 15 14 13 22 22 N 1.28703 * 114.13516 * 342.77036 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09005 * 111.08128 * 336.58775 * 11 9 7 25 25 H 1.09007 * 111.07654 * 100.58238 * 11 9 7 26 26 H 1.09000 * 109.47390 * 299.96731 * 14 13 12 27 27 H 1.08997 * 109.47602 * 59.97630 * 14 13 12 28 28 H 1.07992 * 119.94897 * 359.97284 * 16 15 14 29 29 H 1.07995 * 119.97197 * 180.25055 * 17 16 15 30 30 H 1.07997 * 120.02731 * 179.70450 * 18 17 16 31 31 H 0.96703 * 113.99519 * 270.01704 * 20 19 18 32 32 H 1.07995 * 120.03407 * 0.02601 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6066 -2.5787 0.8702 11 6 2.2248 -3.7003 -0.0870 12 8 1.5022 -4.5876 -0.9658 13 6 0.6747 -3.8356 -1.7150 14 6 0.0405 -4.3351 -2.9876 15 6 -0.8250 -3.2509 -3.5767 16 6 -2.1594 -3.1646 -3.2245 17 6 -2.9546 -2.1678 -3.7587 18 6 -2.4202 -1.2620 -4.6548 19 6 -1.0833 -1.3500 -5.0140 20 8 -0.5553 -0.4605 -5.8955 21 6 -0.2859 -2.3479 -4.4720 22 7 0.4719 -2.6530 -1.2496 23 1 -0.4850 0.8401 -0.0004 24 1 3.1773 -3.4036 -0.5261 25 1 2.3720 -4.1530 0.8936 26 1 0.8198 -4.6051 -3.7003 27 1 -0.5716 -5.2102 -2.7695 28 1 -2.5802 -3.8746 -2.5279 29 1 -3.9955 -2.1000 -3.4791 30 1 -3.0429 -0.4864 -5.0755 31 1 -0.6178 -0.7385 -6.8196 32 1 0.7552 -2.4187 -4.7504 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260755114.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:40 Heat of formation + Delta-G solvation = -28.218854 kcal Electronic energy + Delta-G solvation = -17591.275186 eV Core-core repulsion = 14710.819900 eV Total energy + Delta-G solvation = -2880.455286 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97517 -39.22664 -36.58429 -33.32631 -33.09491 -31.24997 -29.66589 -29.00187 -26.54325 -24.81104 -22.22892 -21.55667 -20.99987 -19.18852 -17.58338 -16.63041 -16.05294 -15.86371 -15.37775 -14.96787 -14.66099 -14.39224 -14.01611 -13.51735 -12.81021 -12.59586 -12.29743 -12.01043 -11.82226 -11.54869 -11.48520 -11.14228 -10.84285 -10.62011 -10.52597 -10.15476 -9.92933 -9.48783 -8.76918 -8.46712 -8.39432 -8.15784 -7.74111 -5.97780 -4.10766 1.65470 1.75422 3.32361 3.37690 3.39814 3.43285 3.92813 4.33923 4.44516 4.56744 5.01066 5.22957 5.28251 5.46471 5.60926 5.66872 5.72104 5.87969 5.96822 6.09747 6.10549 6.24863 6.35363 6.42112 6.76118 6.78556 6.89945 6.97433 7.18137 7.29989 7.61193 7.86704 7.95424 8.21245 8.79018 9.17587 9.57459 11.09311 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.009309 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.118265 B = 3007.027969 C = 4058.542309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.083 3.917 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.158 3.842 10 H 0.058 0.942 11 C 0.023 3.977 12 O -0.372 6.372 13 C 0.209 3.791 14 C 0.005 3.995 15 C -0.037 4.037 16 C -0.104 4.104 17 C -0.103 4.103 18 C -0.148 4.148 19 C 0.101 3.899 20 O -0.498 6.498 21 C -0.121 4.121 22 N -0.441 5.441 23 H 0.260 0.740 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.381 0.619 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 -7.027 -9.688 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.124 4.124 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.079 0.921 9 C 0.051 3.949 10 H 0.075 0.925 11 C -0.054 4.054 12 O -0.279 6.279 13 C -0.021 4.021 14 C -0.033 4.033 15 C -0.038 4.038 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.167 4.167 19 C 0.057 3.943 20 O -0.307 6.307 21 C -0.139 4.139 22 N -0.172 5.172 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.235 0.765 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.271 -5.982 -9.244 11.810 hybrid contribution 0.982 0.436 0.109 1.080 sum -3.289 -5.546 -9.135 11.182 Atomic orbital electron populations 1.70039 1.05870 1.26380 1.46210 1.24959 0.94747 0.98975 0.93731 0.86641 0.79849 0.83496 0.78279 1.20464 1.21075 1.19840 1.20705 0.92144 0.89181 1.55015 0.92140 1.21219 0.89926 0.93224 0.90557 0.92491 1.24672 0.96702 0.91455 0.92552 1.86748 1.53644 1.36588 1.50896 1.25177 0.93822 0.88867 0.94196 1.18927 0.97553 0.96205 0.90605 1.19147 0.93547 0.95956 0.95106 1.20909 0.93467 0.98986 0.98869 1.20858 0.99705 0.94765 0.96794 1.21263 0.94496 0.99930 1.00968 1.18353 0.91147 0.90161 0.94607 1.84905 1.82250 1.44695 1.18879 1.21136 0.99597 0.94170 0.99002 1.75175 1.19602 1.12300 1.10120 0.93034 0.91437 0.89620 0.89268 0.89077 0.86224 0.86095 0.86158 0.76484 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.81 13.02 55.43 0.72 -25.09 16 2 C 0.08 2.42 5.43 -17.82 -0.10 2.32 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.22 8.79 -34.44 -0.30 -15.52 16 8 H 0.06 1.68 7.63 -52.49 -0.40 1.28 16 9 C 0.16 4.20 3.55 -67.51 -0.24 3.96 16 10 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 11 C 0.02 0.51 7.72 38.13 0.29 0.81 16 12 O -0.37 -8.09 11.17 -15.57 -0.17 -8.26 16 13 C 0.21 4.56 7.68 -13.59 -0.10 4.45 16 14 C 0.01 0.08 5.97 -29.03 -0.17 -0.09 16 15 C -0.04 -0.64 4.44 -104.64 -0.46 -1.11 16 16 C -0.10 -1.72 9.70 -39.56 -0.38 -2.10 16 17 C -0.10 -1.60 10.04 -39.60 -0.40 -2.00 16 18 C -0.15 -2.36 9.99 -39.43 -0.39 -2.75 16 19 C 0.10 1.73 6.70 -39.22 -0.26 1.46 16 20 O -0.50 -7.70 13.50 -19.44 -0.26 -7.96 16 21 C -0.12 -2.13 9.64 -39.43 -0.38 -2.51 16 22 N -0.44 -11.45 10.10 -51.71 -0.52 -11.97 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.07 1.47 7.79 -51.93 -0.40 1.06 16 25 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 26 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 27 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 28 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.38 3.50 9.06 45.56 0.41 3.92 16 32 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -34.63 285.79 -6.76 -41.39 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -2.90 Total: 3.57 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.91 Total: -13.07 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.20 Total: -37.06 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.44 Total: -16.22 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.63 -6.76 -41.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260755114.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.175 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds