Wall clock time and date at job start Mon Mar 30 2020 03:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 110.83070 * 300.42188 * 9 7 2 11 11 C 1.54842 * 110.94309 * 176.69402 * 9 7 2 12 12 O 1.44277 * 101.19778 * 218.60217 * 11 9 7 13 13 C 1.34599 * 107.66074 * 24.64551 * 12 11 9 14 14 C 1.50699 * 122.93339 * 162.79449 * 13 12 11 15 15 C 1.50712 * 109.46980 * 179.97438 * 14 13 12 16 16 C 1.38286 * 119.96608 * 269.72725 * 15 14 13 17 17 C 1.38249 * 120.10508 * 179.72686 * 16 15 14 18 18 C 1.38169 * 120.05700 * 0.53991 * 17 16 15 19 19 C 1.38710 * 119.94087 * 359.73805 * 18 17 16 20 20 O 1.35905 * 120.05344 * 179.97438 * 19 18 17 21 21 C 1.38117 * 119.96996 * 89.99742 * 15 14 13 22 22 N 1.28703 * 114.13516 * 342.77036 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09005 * 111.08128 * 336.58775 * 11 9 7 25 25 H 1.09007 * 111.07654 * 100.58238 * 11 9 7 26 26 H 1.09000 * 109.47390 * 299.96731 * 14 13 12 27 27 H 1.08997 * 109.47602 * 59.97630 * 14 13 12 28 28 H 1.07992 * 119.94897 * 359.97284 * 16 15 14 29 29 H 1.07995 * 119.97197 * 180.25055 * 17 16 15 30 30 H 1.07997 * 120.02731 * 179.70450 * 18 17 16 31 31 H 0.96703 * 113.99519 * 270.01704 * 20 19 18 32 32 H 1.07995 * 120.03407 * 0.02601 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6066 -2.5787 0.8702 11 6 2.2248 -3.7003 -0.0870 12 8 1.5022 -4.5876 -0.9658 13 6 0.6747 -3.8356 -1.7150 14 6 0.0405 -4.3351 -2.9876 15 6 -0.8250 -3.2509 -3.5767 16 6 -2.1594 -3.1646 -3.2245 17 6 -2.9546 -2.1678 -3.7587 18 6 -2.4202 -1.2620 -4.6548 19 6 -1.0833 -1.3500 -5.0140 20 8 -0.5553 -0.4605 -5.8955 21 6 -0.2859 -2.3479 -4.4720 22 7 0.4719 -2.6530 -1.2496 23 1 -0.4850 0.8401 -0.0004 24 1 3.1773 -3.4036 -0.5261 25 1 2.3720 -4.1530 0.8936 26 1 0.8198 -4.6051 -3.7003 27 1 -0.5716 -5.2102 -2.7695 28 1 -2.5802 -3.8746 -2.5279 29 1 -3.9955 -2.1000 -3.4791 30 1 -3.0429 -0.4864 -5.0755 31 1 -0.6178 -0.7385 -6.8196 32 1 0.7552 -2.4187 -4.7504 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260755114.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:39 Heat of formation + Delta-G solvation = -55.622869 kcal Electronic energy + Delta-G solvation = -17592.463514 eV Core-core repulsion = 14710.819900 eV Total energy + Delta-G solvation = -2881.643614 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.70714 -40.50590 -37.80366 -35.36562 -34.53372 -33.13704 -31.10246 -30.49131 -28.09486 -26.77894 -23.46937 -22.98237 -22.88346 -20.77862 -18.87432 -18.69024 -17.59734 -17.27345 -16.88099 -16.57145 -16.34140 -15.94484 -15.74203 -14.74389 -14.36017 -14.07879 -13.94290 -13.79168 -13.60868 -12.96029 -12.82856 -12.75597 -12.49606 -12.42666 -12.11392 -12.01952 -11.49221 -11.34630 -10.72561 -10.49694 -9.70791 -9.60272 -9.41062 -8.15107 -6.34256 0.40637 0.49907 1.35282 1.38190 1.46757 1.67201 2.36816 2.51295 2.97214 3.12230 3.33716 3.66882 4.01554 4.03579 4.21840 4.26925 4.31315 4.46979 4.50832 4.62190 4.71174 4.76414 5.01586 5.07866 5.14347 5.30433 5.53144 5.54763 5.64404 5.71579 5.79168 6.04537 6.14141 6.65432 6.93985 7.32455 7.40540 8.91969 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.009309 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.118265 B = 3007.027969 C = 4058.542309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.031 3.969 3 Si 0.955 3.045 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.147 3.853 10 H 0.022 0.978 11 C 0.032 3.968 12 O -0.367 6.367 13 C 0.227 3.773 14 C 0.006 3.994 15 C -0.050 4.050 16 C -0.119 4.119 17 C -0.107 4.107 18 C -0.158 4.158 19 C 0.091 3.909 20 O -0.513 6.513 21 C -0.143 4.143 22 N -0.494 5.494 23 H 0.258 0.742 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.140 0.860 31 H 0.406 0.594 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 -7.571 -10.461 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.172 4.172 3 Si 0.780 3.220 4 H -0.209 1.209 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.039 3.961 10 H 0.040 0.960 11 C -0.045 4.045 12 O -0.273 6.273 13 C -0.002 4.002 14 C -0.031 4.031 15 C -0.050 4.050 16 C -0.137 4.137 17 C -0.125 4.125 18 C -0.176 4.176 19 C 0.047 3.953 20 O -0.326 6.326 21 C -0.161 4.161 22 N -0.226 5.226 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.131 0.869 26 H 0.135 0.865 27 H 0.143 0.857 28 H 0.151 0.849 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.265 0.735 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.999 -6.549 -10.033 12.630 hybrid contribution 0.886 0.530 0.295 1.074 sum -3.112 -6.019 -9.738 11.864 Atomic orbital electron populations 1.70187 1.07398 1.26896 1.47674 1.25772 0.95546 1.02458 0.93469 0.85627 0.79141 0.79292 0.77983 1.20893 1.20490 1.18304 1.21085 0.92471 0.90567 1.54437 0.91968 1.21089 0.90432 0.94368 0.90193 0.96022 1.24610 0.95728 0.90074 0.94103 1.86759 1.53471 1.36331 1.50742 1.26129 0.91724 0.87792 0.94573 1.19221 0.98552 0.96881 0.88455 1.19308 0.94103 0.96337 0.95276 1.21205 0.93532 0.99718 0.99216 1.21236 1.01003 0.94130 0.96106 1.21563 0.94461 1.00525 1.01072 1.18558 0.91671 0.90088 0.95033 1.84824 1.82264 1.44790 1.20680 1.21303 0.99795 0.95067 0.99975 1.75119 1.22048 1.14775 1.10662 0.93348 0.90911 0.86932 0.86478 0.85658 0.84883 0.83521 0.84264 0.73525 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.84 13.02 21.45 0.28 -54.56 16 2 C 0.03 1.83 5.43 84.66 0.46 2.29 16 3 Si 0.95 45.71 29.54 68.60 2.03 47.73 16 4 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.59 8.79 25.60 0.23 -31.37 16 8 H 0.06 3.45 7.63 -2.91 -0.02 3.43 16 9 C 0.15 7.91 3.55 44.66 0.16 8.07 16 10 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 11 C 0.03 1.37 7.72 72.61 0.56 1.93 16 12 O -0.37 -15.26 11.17 -78.64 -0.88 -16.13 16 13 C 0.23 9.60 7.68 88.57 0.68 10.28 16 14 C 0.01 0.20 5.97 29.11 0.17 0.37 16 15 C -0.05 -1.67 4.44 -19.88 -0.09 -1.76 16 16 C -0.12 -3.76 9.70 22.28 0.22 -3.54 16 17 C -0.11 -3.17 10.04 22.26 0.22 -2.95 16 18 C -0.16 -4.84 9.99 22.37 0.22 -4.62 16 19 C 0.09 3.03 6.70 22.51 0.15 3.18 16 20 O -0.51 -15.39 13.50 -92.48 -1.25 -16.64 16 21 C -0.14 -4.96 9.64 22.36 0.22 -4.75 16 22 N -0.49 -25.74 10.10 -432.72 -4.37 -30.11 16 23 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 24 H 0.07 3.07 7.79 -2.38 -0.02 3.05 16 25 H 0.11 4.19 8.14 -2.38 -0.02 4.18 16 26 H 0.12 2.94 8.08 -2.39 -0.02 2.92 16 27 H 0.13 2.98 8.08 -2.39 -0.02 2.96 16 28 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 29 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.41 6.97 9.06 -74.06 -0.67 6.30 16 32 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -74.89 285.79 -0.53 -75.42 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.47 Total: 17.15 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 3.20 Total: -22.86 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -4.09 Total: -84.67 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -2.13 Total: -32.77 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.89 -0.53 -75.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260755114.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.798 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds