Wall clock time and date at job start Mon Mar 30 2020 03:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 119.99967 * 2 1 4 4 H 1.48502 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47345 * 300.00708 * 3 2 1 6 6 H 1.48509 * 109.46897 * 60.00522 * 3 2 1 7 7 C 1.37880 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99723 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.63910 * 60.41086 * 9 7 2 11 11 N 1.47202 * 109.80629 * 180.92581 * 9 7 2 12 12 C 1.47017 * 110.71324 * 65.65091 * 11 9 7 13 13 H 1.08991 * 109.48069 * 301.55588 * 12 11 9 14 14 C 1.50702 * 109.47681 * 181.54405 * 12 11 9 15 15 C 1.38234 * 119.99895 * 319.75163 * 14 12 11 16 16 C 1.38241 * 120.00059 * 180.36621 * 15 14 12 17 17 C 1.38234 * 119.99664 * 359.86127 * 16 15 14 18 18 C 1.38235 * 120.00226 * 0.09087 * 17 16 15 19 19 C 1.38230 * 119.99899 * 0.02562 * 18 17 16 20 20 C 1.53155 * 109.44968 * 61.55495 * 12 11 9 21 21 O 1.45680 * 108.92312 * 302.75388 * 20 12 11 22 22 C 1.35101 * 115.12052 * 50.88914 * 21 20 12 23 23 O 1.20822 * 121.09783 * 131.64731 * 22 21 20 24 24 H 0.97001 * 120.00552 * 359.97438 * 1 2 3 25 25 H 1.00899 * 111.00571 * 301.90536 * 11 9 7 26 26 H 1.08001 * 120.00279 * 0.27436 * 15 14 12 27 27 H 1.07997 * 119.99891 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.99729 * 180.02562 * 17 16 15 29 29 H 1.08001 * 119.99730 * 179.97438 * 18 17 16 30 30 H 1.08000 * 120.00376 * 179.97438 * 19 18 17 31 31 H 1.08997 * 109.56129 * 62.58338 * 20 12 11 32 32 H 1.08999 * 109.55930 * 182.92207 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3963 1.2127 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6285 -2.5628 -0.8930 11 7 2.2009 -3.6235 0.0212 12 6 2.9524 -3.6449 1.2846 13 1 3.4854 -2.7021 1.4065 14 6 3.9414 -4.7818 1.2617 15 6 3.5795 -6.0019 0.7220 16 6 4.4841 -7.0472 0.7079 17 6 5.7516 -6.8713 1.2309 18 6 6.1138 -5.6509 1.7697 19 6 5.2084 -4.6065 1.7860 20 6 1.9808 -3.8370 2.4528 21 8 0.9910 -2.7683 2.4246 22 6 0.3802 -2.5836 1.2339 23 8 -0.8218 -2.4891 1.1571 24 1 -0.4851 0.8400 0.0004 25 1 2.8254 -3.5848 -0.7703 26 1 2.5895 -6.1391 0.3128 27 1 4.2012 -8.0005 0.2866 28 1 6.4585 -7.6877 1.2195 29 1 7.1039 -5.5137 2.1787 30 1 5.4911 -3.6531 2.2073 31 1 1.4803 -4.8005 2.3566 32 1 2.5298 -3.8012 3.3937 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261012851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:28 Heat of formation + Delta-G solvation = -52.937982 kcal Electronic energy + Delta-G solvation = -17888.447532 eV Core-core repulsion = 15006.920343 eV Total energy + Delta-G solvation = -2881.527188 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81013 -38.68237 -36.10554 -34.78679 -32.95825 -31.21544 -30.73060 -28.19658 -26.21628 -23.74007 -23.21316 -22.37758 -20.90529 -18.86546 -16.97753 -16.95703 -15.94136 -15.66886 -15.30440 -14.94499 -14.55296 -14.20841 -13.68827 -13.64359 -13.27270 -13.16189 -12.69440 -12.31257 -11.94189 -11.69670 -11.28061 -11.06840 -11.05212 -10.84471 -10.59043 -10.29700 -9.95275 -9.65760 -9.03209 -8.78545 -8.62807 -8.42170 -7.73023 -6.22227 -4.41748 1.45403 1.54012 3.17051 3.25613 3.28393 3.34722 3.90059 4.22997 4.41440 4.74650 4.95866 5.06981 5.09008 5.16761 5.29330 5.42639 5.65136 5.65452 5.71382 5.82701 6.03548 6.11548 6.26328 6.35162 6.57393 6.62836 6.80888 6.94578 7.13219 7.50428 7.58602 7.79108 8.00750 8.20983 8.63212 9.00491 9.28043 10.78456 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.007159 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.657566 B = 3910.199129 C = 4453.631091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.069 3.931 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.178 3.822 10 H 0.079 0.921 11 N -0.676 5.676 12 C 0.086 3.914 13 H 0.073 0.927 14 C -0.075 4.075 15 C -0.092 4.092 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.112 4.112 20 C 0.097 3.903 21 O -0.387 6.387 22 C 0.510 3.490 23 O -0.467 6.467 24 H 0.270 0.730 25 H 0.344 0.656 26 H 0.133 0.867 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.967 -10.808 2.523 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.602 4.602 8 H 0.088 0.912 9 C 0.069 3.931 10 H 0.097 0.903 11 N -0.309 5.309 12 C -0.024 4.024 13 H 0.091 0.909 14 C -0.075 4.075 15 C -0.110 4.110 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.144 4.144 19 C -0.131 4.131 20 C 0.022 3.978 21 O -0.307 6.307 22 C 0.350 3.650 23 O -0.346 6.346 24 H 0.080 0.920 25 H 0.162 0.838 26 H 0.151 0.849 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.082 0.918 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.632 -10.987 2.856 14.888 hybrid contribution 1.199 1.797 -0.208 2.170 sum 10.831 -9.191 2.648 14.449 Atomic orbital electron populations 1.70043 1.05786 1.27679 1.45652 1.25139 0.95015 0.99951 0.93805 0.86396 0.79939 0.83011 0.77935 1.19558 1.20559 1.20642 1.21390 0.93226 0.89924 1.55692 0.91217 1.20008 0.91022 0.88623 0.93489 0.90332 1.61307 1.20599 1.45969 1.03011 1.20985 0.92969 0.95897 0.92550 0.90946 1.19863 0.94171 0.95056 0.98451 1.21172 1.00174 0.91964 0.97726 1.21172 0.93971 0.98979 1.00371 1.21104 0.96600 0.97301 0.99452 1.21054 0.99303 0.93440 1.00590 1.21111 0.93198 0.99113 0.99664 1.23061 0.88097 0.88621 0.97997 1.86602 1.54039 1.52688 1.37413 1.23965 0.87328 0.69753 0.83920 1.90459 1.15832 1.42865 1.85464 0.92044 0.83808 0.84932 0.86357 0.86625 0.86427 0.86068 0.91809 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.15 11.95 55.43 0.66 -24.49 16 2 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.56 -14.72 7.89 -34.44 -0.27 -14.99 16 8 H 0.07 1.75 7.14 -52.49 -0.37 1.38 16 9 C 0.18 4.39 3.08 -69.56 -0.21 4.18 16 10 H 0.08 2.11 8.14 -51.93 -0.42 1.68 16 11 N -0.68 -13.15 5.62 -102.70 -0.58 -13.73 16 12 C 0.09 1.51 2.57 -68.72 -0.18 1.34 16 13 H 0.07 1.39 6.68 -51.93 -0.35 1.04 16 14 C -0.07 -1.08 4.87 -104.62 -0.51 -1.59 16 15 C -0.09 -1.24 9.33 -39.58 -0.37 -1.61 16 16 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 17 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 18 C -0.13 -1.41 10.05 -39.59 -0.40 -1.81 16 19 C -0.11 -1.45 9.67 -39.59 -0.38 -1.83 16 20 C 0.10 1.75 6.51 37.24 0.24 2.00 16 21 O -0.39 -9.30 10.66 -41.58 -0.44 -9.74 16 22 C 0.51 13.56 5.99 36.30 0.22 13.78 16 23 O -0.47 -13.86 17.37 -18.62 -0.32 -14.19 16 24 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.34 6.28 8.73 -39.29 -0.34 5.94 16 26 H 0.13 1.83 7.72 -52.49 -0.41 1.42 16 27 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.12 1.45 8.04 -52.49 -0.42 1.03 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 277.02 15.07 4.17 4.17 Total: -1.00 -31.31 277.02 -7.84 -39.16 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.56 Total: 5.37 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.75 Total: -2.38 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.09 Total: -38.21 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.77 Total: -23.93 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.31 -7.84 -39.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.782 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds