Wall clock time and date at job start Mon Mar 30 2020 03:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 119.99967 * 2 1 4 4 H 1.48502 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47345 * 300.00708 * 3 2 1 6 6 H 1.48509 * 109.46897 * 60.00522 * 3 2 1 7 7 C 1.37880 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99723 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.63910 * 60.41086 * 9 7 2 11 11 N 1.47202 * 109.80629 * 180.92581 * 9 7 2 12 12 C 1.47017 * 110.71324 * 65.65091 * 11 9 7 13 13 H 1.08991 * 109.48069 * 301.55588 * 12 11 9 14 14 C 1.50702 * 109.47681 * 181.54405 * 12 11 9 15 15 C 1.38234 * 119.99895 * 319.75163 * 14 12 11 16 16 C 1.38241 * 120.00059 * 180.36621 * 15 14 12 17 17 C 1.38234 * 119.99664 * 359.86127 * 16 15 14 18 18 C 1.38235 * 120.00226 * 0.09087 * 17 16 15 19 19 C 1.38230 * 119.99899 * 0.02562 * 18 17 16 20 20 C 1.53155 * 109.44968 * 61.55495 * 12 11 9 21 21 O 1.45680 * 108.92312 * 302.75388 * 20 12 11 22 22 C 1.35101 * 115.12052 * 50.88914 * 21 20 12 23 23 O 1.20822 * 121.09783 * 131.64731 * 22 21 20 24 24 H 0.97001 * 120.00552 * 359.97438 * 1 2 3 25 25 H 1.00899 * 111.00571 * 301.90536 * 11 9 7 26 26 H 1.08001 * 120.00279 * 0.27436 * 15 14 12 27 27 H 1.07997 * 119.99891 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.99729 * 180.02562 * 17 16 15 29 29 H 1.08001 * 119.99730 * 179.97438 * 18 17 16 30 30 H 1.08000 * 120.00376 * 179.97438 * 19 18 17 31 31 H 1.08997 * 109.56129 * 62.58338 * 20 12 11 32 32 H 1.08999 * 109.55930 * 182.92207 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3963 1.2127 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6285 -2.5628 -0.8930 11 7 2.2009 -3.6235 0.0212 12 6 2.9524 -3.6449 1.2846 13 1 3.4854 -2.7021 1.4065 14 6 3.9414 -4.7818 1.2617 15 6 3.5795 -6.0019 0.7220 16 6 4.4841 -7.0472 0.7079 17 6 5.7516 -6.8713 1.2309 18 6 6.1138 -5.6509 1.7697 19 6 5.2084 -4.6065 1.7860 20 6 1.9808 -3.8370 2.4528 21 8 0.9910 -2.7683 2.4246 22 6 0.3802 -2.5836 1.2339 23 8 -0.8218 -2.4891 1.1571 24 1 -0.4851 0.8400 0.0004 25 1 2.8254 -3.5848 -0.7703 26 1 2.5895 -6.1391 0.3128 27 1 4.2012 -8.0005 0.2866 28 1 6.4585 -7.6877 1.2195 29 1 7.1039 -5.5137 2.1787 30 1 5.4911 -3.6531 2.2073 31 1 1.4803 -4.8005 2.3566 32 1 2.5298 -3.8012 3.3937 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261012851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:28 Heat of formation + Delta-G solvation = -73.361267 kcal Electronic energy + Delta-G solvation = -17889.333152 eV Core-core repulsion = 15006.920343 eV Total energy + Delta-G solvation = -2882.412808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45288 -39.97426 -37.99622 -36.57847 -34.81474 -32.71699 -31.67128 -29.58620 -28.06461 -25.59131 -24.76144 -23.35331 -22.20442 -20.59865 -18.94532 -18.29024 -17.65880 -17.24520 -16.92358 -16.40382 -16.20070 -15.70574 -15.22388 -15.06709 -14.88552 -14.27895 -14.06716 -13.74588 -13.51069 -13.24039 -12.98513 -12.95648 -12.81728 -12.19824 -11.87603 -11.80354 -11.79802 -11.41255 -11.04482 -10.50858 -9.70681 -9.60964 -9.44129 -8.28101 -6.56079 0.49117 0.61668 1.30180 1.36688 1.41033 1.49119 2.29446 2.52410 2.93476 3.01107 3.26107 3.73078 3.97609 4.05190 4.20579 4.28402 4.29534 4.41495 4.54028 4.72110 4.79842 4.87028 4.96378 5.16445 5.29684 5.49816 5.56993 5.68517 5.73044 5.77228 5.96006 6.20278 6.26813 6.45161 6.60220 6.93681 7.18256 8.71028 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.007159 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.657566 B = 3910.199129 C = 4453.631091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.012 3.988 3 Si 0.970 3.030 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.284 1.284 7 C -0.564 4.564 8 H 0.080 0.920 9 C 0.183 3.817 10 H 0.048 0.952 11 N -0.664 5.664 12 C 0.094 3.906 13 H 0.057 0.943 14 C -0.090 4.090 15 C -0.104 4.104 16 C -0.128 4.128 17 C -0.120 4.120 18 C -0.124 4.124 19 C -0.120 4.120 20 C 0.088 3.912 21 O -0.405 6.405 22 C 0.510 3.490 23 O -0.512 6.512 24 H 0.268 0.732 25 H 0.352 0.648 26 H 0.122 0.878 27 H 0.140 0.860 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.191 -11.926 3.034 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.191 4.191 3 Si 0.794 3.206 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.602 4.602 8 H 0.098 0.902 9 C 0.072 3.928 10 H 0.065 0.935 11 N -0.297 5.297 12 C -0.016 4.016 13 H 0.075 0.925 14 C -0.090 4.090 15 C -0.122 4.122 16 C -0.146 4.146 17 C -0.138 4.138 18 C -0.142 4.142 19 C -0.138 4.138 20 C 0.014 3.986 21 O -0.326 6.326 22 C 0.352 3.648 23 O -0.395 6.395 24 H 0.077 0.923 25 H 0.171 0.829 26 H 0.140 0.860 27 H 0.158 0.842 28 H 0.164 0.836 29 H 0.162 0.838 30 H 0.145 0.855 31 H 0.094 0.906 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.910 -12.138 3.368 18.038 hybrid contribution 0.308 1.991 -0.324 2.041 sum 13.218 -10.147 3.044 16.939 Atomic orbital electron populations 1.70210 1.07681 1.28367 1.47517 1.26076 0.95700 1.03884 0.93460 0.85314 0.79291 0.78326 0.77668 1.17812 1.20077 1.21025 1.21725 0.93733 0.90388 1.54342 0.90168 1.19716 0.91516 0.90053 0.91502 0.93452 1.61210 1.20723 1.43204 1.04580 1.20907 0.92992 0.96821 0.90887 0.92528 1.19551 0.94241 0.94217 1.00995 1.21158 1.00376 0.92404 0.98294 1.21435 0.93960 0.99204 0.99952 1.21509 0.96621 0.97981 0.97698 1.21384 1.00037 0.92939 0.99836 1.21241 0.92775 1.00142 0.99655 1.23579 0.87416 0.87393 1.00180 1.86538 1.55447 1.54327 1.36296 1.24236 0.87031 0.68474 0.85009 1.90416 1.17668 1.45025 1.86397 0.92328 0.82932 0.86029 0.84217 0.83602 0.83777 0.85511 0.90645 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.56 11.95 21.45 0.26 -54.30 16 2 C 0.01 0.67 5.30 84.66 0.45 1.12 16 3 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 4 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.56 -29.65 7.89 25.60 0.20 -29.45 16 8 H 0.08 3.97 7.14 -2.91 -0.02 3.95 16 9 C 0.18 9.28 3.08 43.56 0.13 9.41 16 10 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 11 N -0.66 -25.99 5.62 -478.84 -2.69 -28.68 16 12 C 0.09 3.22 2.57 44.20 0.11 3.33 16 13 H 0.06 2.13 6.68 -2.39 -0.02 2.11 16 14 C -0.09 -2.42 4.87 -19.87 -0.10 -2.52 16 15 C -0.10 -2.60 9.33 22.27 0.21 -2.40 16 16 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 17 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 18 C -0.12 -2.29 10.05 22.27 0.22 -2.06 16 19 C -0.12 -2.76 9.67 22.27 0.22 -2.54 16 20 C 0.09 3.09 6.51 72.03 0.47 3.56 16 21 O -0.41 -19.74 10.66 -60.27 -0.64 -20.39 16 22 C 0.51 28.03 5.99 71.43 0.43 28.46 16 23 O -0.51 -31.84 17.37 21.86 0.38 -31.46 16 24 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 25 H 0.35 12.81 8.73 -89.69 -0.78 12.02 16 26 H 0.12 3.26 7.72 -2.91 -0.02 3.24 16 27 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 30 H 0.13 2.71 8.04 -2.91 -0.02 2.69 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 Total: -1.00 -69.48 277.02 2.48 -67.00 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.36 Total: 20.16 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 2.79 Total: 2.76 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -2.43 Total: -82.98 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -0.26 Total: -51.85 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -69.48 2.48 -67.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261012851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.361 kcal (2) G-P(sol) polarization free energy of solvation -69.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds