Wall clock time and date at job start Mon Mar 30 2020 03:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00272 * 2 1 4 4 H 1.48494 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46804 * 300.00048 * 3 2 1 6 6 H 1.48499 * 109.46784 * 59.99729 * 3 2 1 7 7 C 1.38954 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99850 * 164.15603 * 7 2 1 9 9 N 1.37091 * 120.00184 * 344.42173 * 7 2 1 10 10 C 1.46092 * 118.73112 * 338.31524 * 9 7 2 11 11 C 1.52834 * 110.02337 * 198.17977 * 10 9 7 12 12 H 1.09000 * 109.38262 * 70.92841 * 11 10 9 13 13 C 1.50704 * 109.80769 * 191.23938 * 11 10 9 14 14 C 1.38239 * 119.99859 * 84.22040 * 13 11 10 15 15 C 1.38234 * 119.99826 * 179.76267 * 14 13 11 16 16 C 1.38229 * 120.00047 * 0.49330 * 15 14 13 17 17 C 1.38237 * 120.00049 * 359.78398 * 16 15 14 18 18 C 1.38236 * 120.00261 * 359.96267 * 17 16 15 19 19 O 1.43238 * 108.82596 * 311.21101 * 11 10 9 20 20 C 1.42970 * 112.98881 * 68.18588 * 19 11 10 21 21 C 1.33877 * 118.73101 * 158.57365 * 9 7 2 22 22 O 1.21295 * 118.83061 * 358.11953 * 21 9 7 23 23 H 0.97003 * 119.99827 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.39290 * 318.49229 * 10 9 7 25 25 H 1.08996 * 109.39485 * 78.21185 * 10 9 7 26 26 H 1.07998 * 119.99986 * 0.02562 * 14 13 11 27 27 H 1.07999 * 120.00124 * 180.25567 * 15 14 13 28 28 H 1.07998 * 120.00267 * 179.76392 * 16 15 14 29 29 H 1.08004 * 120.00402 * 179.97438 * 17 16 15 30 30 H 1.07989 * 120.00187 * 179.97438 * 18 17 16 31 31 H 1.08996 * 109.41514 * 190.29612 * 20 19 11 32 32 H 1.08997 * 109.41203 * 70.50391 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0581 -1.2211 -0.2559 9 7 1.3611 -2.3690 0.3178 10 6 0.1274 -2.2967 1.0969 11 6 -0.1804 -3.6591 1.7172 12 1 0.5366 -3.8651 2.5119 13 6 -1.5769 -3.6585 2.2838 14 6 -2.6563 -3.9242 1.4621 15 6 -3.9368 -3.9284 1.9829 16 6 -4.1387 -3.6570 3.3231 17 6 -3.0598 -3.3857 4.1437 18 6 -1.7788 -3.3866 3.6241 19 8 -0.0742 -4.6638 0.7018 20 6 1.2669 -4.8573 0.2458 21 6 1.8864 -3.5299 -0.0929 22 8 2.8981 -3.5101 -0.7617 23 1 -0.4850 0.8401 0.0004 24 1 0.2415 -1.5547 1.8873 25 1 -0.6959 -2.0052 0.4449 26 1 -2.4988 -4.1326 0.4142 27 1 -4.7798 -4.1400 1.3418 28 1 -5.1395 -3.6566 3.7292 29 1 -3.2176 -3.1732 5.1908 30 1 -0.9360 -3.1742 4.2650 31 1 1.2602 -5.4909 -0.6410 32 1 1.8502 -5.3397 1.0301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261084578.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:17 Heat of formation + Delta-G solvation = -38.609852 kcal Electronic energy + Delta-G solvation = -17908.732094 eV Core-core repulsion = 15027.826220 eV Total energy + Delta-G solvation = -2880.905874 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.87674 -38.62484 -36.54786 -34.82491 -32.14539 -31.41666 -30.67938 -27.96466 -27.24089 -24.28101 -23.35240 -22.33240 -20.92363 -18.82662 -17.25294 -16.77292 -16.64225 -15.37982 -15.20108 -14.81664 -14.51728 -14.28603 -13.85428 -13.56734 -13.30810 -13.12779 -12.70062 -12.47590 -12.06272 -11.61292 -11.25291 -11.11378 -10.87249 -10.81331 -10.57661 -10.33797 -10.27940 -9.66203 -9.09971 -8.69884 -8.53473 -8.20452 -7.76002 -6.33418 -3.94937 1.52592 1.63352 3.11409 3.22943 3.30106 3.73959 3.90048 4.09496 4.18242 4.67927 5.02306 5.08731 5.13946 5.24141 5.36162 5.51809 5.56123 5.73261 5.81051 5.81857 5.86891 6.08839 6.21410 6.27667 6.58355 6.65656 6.72206 6.81322 7.19531 7.23892 7.43262 7.54483 8.10221 8.39417 9.11672 9.36902 9.85957 10.65286 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.008096 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.205598 B = 3457.642892 C = 4368.253203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.032 3.968 3 Si 0.927 3.073 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.313 4.313 8 H 0.104 0.896 9 N -0.432 5.432 10 C 0.119 3.881 11 C 0.104 3.896 12 H 0.064 0.936 13 C -0.064 4.064 14 C -0.086 4.086 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.109 4.109 19 O -0.374 6.374 20 C 0.060 3.940 21 C 0.411 3.589 22 O -0.593 6.593 23 H 0.269 0.731 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.920 -5.582 7.935 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.172 4.172 3 Si 0.753 3.247 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.441 4.441 8 H 0.121 0.879 9 N -0.150 5.150 10 C -0.005 4.005 11 C 0.046 3.954 12 H 0.082 0.918 13 C -0.065 4.065 14 C -0.104 4.104 15 C -0.143 4.143 16 C -0.143 4.143 17 C -0.143 4.143 18 C -0.127 4.127 19 O -0.293 6.293 20 C -0.019 4.019 21 C 0.199 3.801 22 O -0.480 6.480 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.147 0.853 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.755 -5.515 7.549 12.146 hybrid contribution 0.431 1.032 0.133 1.126 sum -7.324 -4.483 7.682 11.522 Atomic orbital electron populations 1.69981 1.05922 1.27565 1.48086 1.25376 0.95482 0.99927 0.96415 0.85854 0.79936 0.81067 0.77836 1.19140 1.20637 1.20558 1.19791 0.95483 0.82844 1.45977 0.87879 1.43279 1.21578 1.05456 1.44700 1.21941 0.89614 0.92473 0.96479 1.21463 0.93666 0.90065 0.90248 0.91803 1.19477 0.93817 0.99716 0.93483 1.21051 0.91671 0.97341 1.00345 1.21133 0.96950 1.00766 0.95408 1.21097 0.98582 1.00485 0.94094 1.21009 0.92540 1.01125 0.99594 1.20938 0.97420 1.00019 0.94331 1.88037 1.27020 1.57832 1.56409 1.22666 0.82679 0.96165 1.00433 1.20311 0.88353 0.86237 0.85197 1.90546 1.27305 1.87214 1.42894 0.92101 0.90774 0.88379 0.85327 0.86220 0.86480 0.86249 0.86063 0.86729 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.43 10.57 55.50 0.59 -22.84 16 2 C 0.03 0.84 5.06 -17.47 -0.09 0.75 16 3 Si 0.93 20.75 29.58 -169.99 -5.03 15.72 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.31 -8.85 9.15 -14.93 -0.14 -8.99 16 8 H 0.10 3.06 7.27 -52.48 -0.38 2.68 16 9 N -0.43 -11.35 2.99 -115.59 -0.35 -11.70 16 10 C 0.12 2.73 4.28 -4.35 -0.02 2.71 16 11 C 0.10 1.96 2.87 -27.97 -0.08 1.88 16 12 H 0.06 1.13 8.01 -51.93 -0.42 0.71 16 13 C -0.06 -1.08 4.99 -104.62 -0.52 -1.60 16 14 C -0.09 -1.37 9.35 -39.58 -0.37 -1.74 16 15 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 16 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 17 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 18 C -0.11 -1.58 9.68 -39.58 -0.38 -1.96 16 19 O -0.37 -7.26 9.67 -35.23 -0.34 -7.60 16 20 C 0.06 1.18 6.98 35.83 0.25 1.43 16 21 C 0.41 10.43 7.55 -11.56 -0.09 10.34 16 22 O -0.59 -17.08 16.49 5.54 0.09 -16.99 16 23 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.07 1.75 7.64 -51.93 -0.40 1.35 16 25 H 0.10 2.47 6.79 -51.93 -0.35 2.12 16 26 H 0.13 2.12 7.64 -52.49 -0.40 1.72 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 274.85 15.07 4.14 4.14 Total: -1.00 -31.57 274.85 -7.14 -38.71 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.62 Total: 3.69 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.63 Total: -3.14 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.24 Total: -34.54 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.25 Total: -24.58 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.57 -7.14 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084578.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.099 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds