Wall clock time and date at job start Mon Mar 30 2020 03:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99636 * 2 1 4 4 H 1.48504 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46824 * 299.99453 * 3 2 1 6 6 H 1.48495 * 109.47710 * 59.99237 * 3 2 1 7 7 C 1.37872 * 120.00545 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46990 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46990 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47075 * 179.97438 * 12 11 10 14 14 C 1.46900 * 110.99698 * 179.97438 * 13 12 11 15 15 C 1.53046 * 113.14861 * 154.99839 * 14 13 12 16 16 S 1.81431 * 89.88784 * 148.14644 * 15 14 13 17 17 O 1.42099 * 112.75334 * 79.52468 * 16 15 14 18 18 O 1.42103 * 112.75267 * 223.27072 * 16 15 14 19 19 C 1.53040 * 113.15063 * 255.36850 * 14 13 12 20 20 H 0.96996 * 120.00358 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47166 * 59.99640 * 9 7 2 22 22 H 1.09003 * 109.46960 * 299.99560 * 9 7 2 23 23 H 1.09001 * 109.47233 * 59.99799 * 10 9 7 24 24 H 1.09003 * 109.46876 * 299.99730 * 10 9 7 25 25 H 1.08991 * 109.47507 * 59.99833 * 11 10 9 26 26 H 1.09003 * 109.46871 * 299.99464 * 11 10 9 27 27 H 1.09001 * 109.47233 * 59.99531 * 12 11 10 28 28 H 1.09003 * 109.46876 * 299.99462 * 12 11 10 29 29 H 1.00901 * 110.99962 * 303.95034 * 13 12 11 30 30 H 1.09000 * 112.53127 * 25.18980 * 14 13 12 31 31 H 1.08997 * 113.15080 * 263.40782 * 15 14 13 32 32 H 1.09001 * 113.15053 * 32.89259 * 15 14 13 33 33 H 1.08997 * 113.15476 * 327.12179 * 19 14 13 34 34 H 1.09007 * 113.14100 * 96.59743 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3967 1.2123 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 6 2.4749 -6.1499 -0.0008 13 7 1.7405 -7.4222 -0.0008 14 6 2.6651 -8.5637 -0.0020 15 6 2.0532 -9.8342 0.5927 16 16 3.0578 -10.8410 -0.5337 17 8 4.3991 -10.9906 -0.0890 18 8 2.3250 -11.9094 -1.1176 19 6 2.7665 -9.2543 -1.3639 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6243 -2.5567 0.8904 23 1 2.8722 -3.6042 0.8905 24 1 2.8721 -3.6042 -0.8895 25 1 0.8542 -5.0446 -0.8902 26 1 0.8537 -5.0451 0.8897 27 1 3.1017 -6.0926 0.8892 28 1 3.1015 -6.0917 -0.8908 29 1 1.1044 -7.4725 0.7809 30 1 3.6363 -8.3150 0.4259 31 1 2.3079 -9.9819 1.6421 32 1 0.9828 -9.9220 0.4066 33 1 1.8337 -9.2302 -1.9272 34 1 3.6189 -8.9163 -1.9532 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380017717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:32 Heat of formation + Delta-G solvation = -65.284937 kcal Electronic energy + Delta-G solvation = -15412.017829 eV Core-core repulsion = 12665.399188 eV Total energy + Delta-G solvation = -2746.618641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.33363 -37.57394 -36.39482 -35.28006 -33.18862 -31.43939 -27.92483 -27.01794 -24.41522 -21.63511 -21.53837 -20.00773 -19.13419 -17.13406 -16.80894 -16.52500 -16.23162 -15.53296 -15.37783 -14.54370 -14.45562 -14.06898 -13.39029 -12.97946 -12.60080 -12.57656 -12.55674 -12.19898 -11.86476 -11.72430 -11.55274 -11.05409 -11.00457 -10.69235 -10.62457 -10.51103 -10.44955 -9.68002 -9.29751 -9.02506 -8.68556 -8.35304 -6.00173 -4.02514 -0.20410 1.64425 3.30237 3.32821 3.37696 3.41808 3.58766 3.82419 4.16324 4.41516 4.46042 4.57587 4.85463 5.03537 5.27818 5.33809 5.35599 5.38799 5.60281 5.79889 6.06690 6.14298 6.43548 6.75151 6.81728 6.92154 7.14928 7.18651 7.68350 7.83233 8.00554 8.43305 9.05218 9.61657 11.11205 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.079739 B = 0.002974 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.060231 B = 9412.087407 C = 9572.773591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.054 3.946 13 N -0.664 5.664 14 C 0.104 3.896 15 C -0.612 4.612 16 S 2.413 3.587 17 O -0.918 6.918 18 O -0.927 6.927 19 C -0.587 4.587 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.349 0.651 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 -21.195 0.379 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.075 4.075 13 N -0.296 5.296 14 C -0.009 4.009 15 C -0.740 4.740 16 S 2.593 3.407 17 O -0.915 6.915 18 O -0.924 6.924 19 C -0.718 4.718 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.169 0.831 30 H 0.112 0.888 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.995 -22.173 -0.414 22.733 hybrid contribution 0.184 2.156 1.054 2.407 sum 5.179 -20.017 0.640 20.686 Atomic orbital electron populations 1.69972 1.06059 1.26460 1.51053 1.25037 0.94851 0.99280 0.95395 0.86551 0.80114 0.83840 0.77576 1.19757 1.21008 1.21030 1.21321 0.93058 0.91191 1.50298 0.92708 1.19097 0.94014 0.91357 0.97171 1.21597 0.99118 0.93865 1.00168 1.21648 0.97846 0.93778 1.02149 1.22237 0.96487 0.88169 1.00578 1.60523 1.18444 1.00753 1.49920 1.21727 0.96754 0.90541 0.91862 1.31272 1.15780 1.11269 1.15720 1.08111 0.75888 0.76463 0.80204 1.93722 1.31818 1.86923 1.79013 1.93650 1.72778 1.52154 1.73782 1.31114 1.11964 1.20554 1.08140 0.93075 0.96595 0.96725 0.93599 0.93374 0.91515 0.92606 0.94981 0.90867 0.83106 0.88788 0.85847 0.83151 0.83110 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.12 -1.87 5.47 -26.73 -0.15 -2.02 16 12 C 0.05 0.69 5.53 -3.82 -0.02 0.67 16 13 N -0.66 -7.02 6.53 -117.80 -0.77 -7.78 16 14 C 0.10 0.84 3.80 -67.67 -0.26 0.59 16 15 C -0.61 -3.43 7.51 37.18 0.28 -3.15 16 16 S 2.41 15.51 7.55 -107.50 -0.81 14.70 16 17 O -0.92 -8.93 18.18 -57.30 -1.04 -9.98 16 18 O -0.93 -9.12 18.18 -57.30 -1.04 -10.17 16 19 C -0.59 -3.97 7.75 37.18 0.29 -3.68 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.35 3.33 8.52 -39.29 -0.33 2.99 16 30 H 0.09 0.72 7.86 -51.93 -0.41 0.31 16 31 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.15 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 299.46 15.07 4.51 4.51 Total: -1.00 -35.79 299.46 -9.34 -45.12 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -5.36 Total: -3.58 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -0.54 Total: -23.16 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.03 Total: -34.13 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -2.08 Total: -20.14 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 15.51 SS G_CDS: -0.81 Total: 14.70 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.79 -9.34 -45.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380017717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.161 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds