Wall clock time and date at job start Mon Mar 30 2020 04:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46721 * 2 1 4 4 C 1.53004 * 109.47017 * 119.99501 * 2 1 3 5 5 C 1.52997 * 115.55177 * 325.58873 * 4 2 1 6 6 C 1.53001 * 117.51348 * 111.28905 * 4 2 1 7 7 C 1.52994 * 117.49675 * 179.91393 * 4 2 1 8 8 H 1.09000 * 117.49792 * 144.99738 * 7 4 2 9 9 N 1.46511 * 117.49963 * 0.02562 * 7 4 2 10 10 S 1.65604 * 119.99806 * 144.99705 * 9 7 4 11 11 O 1.42096 * 106.39976 * 178.54025 * 10 9 7 12 12 O 1.42102 * 106.40222 * 311.46069 * 10 9 7 13 13 C 1.76197 * 107.21523 * 65.00179 * 10 9 7 14 14 H 1.08003 * 120.00451 * 359.97438 * 13 10 9 15 15 C 1.37886 * 119.99653 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99761 * 180.02562 * 15 13 10 17 17 Si 1.86801 * 119.99993 * 359.97438 * 15 13 10 18 18 H 1.48500 * 109.46715 * 90.00382 * 17 15 13 19 19 H 1.48493 * 109.47015 * 209.99967 * 17 15 13 20 20 H 1.48502 * 109.47067 * 330.00680 * 17 15 13 21 21 H 1.08991 * 109.47097 * 299.99785 * 1 2 3 22 22 H 1.08994 * 109.46808 * 60.00287 * 1 2 3 23 23 H 1.09003 * 109.46316 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47494 * 240.00264 * 2 1 3 25 25 H 1.08996 * 109.46770 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47115 * 299.99984 * 3 2 1 27 27 H 1.08997 * 109.46921 * 59.99913 * 3 2 1 28 28 H 1.09002 * 109.47153 * 274.32690 * 5 4 2 29 29 H 1.09001 * 109.46832 * 154.32881 * 5 4 2 30 30 H 1.09004 * 109.47261 * 34.32862 * 5 4 2 31 31 H 1.08997 * 117.49845 * 214.96883 * 6 4 2 32 32 H 1.08999 * 117.50024 * 359.97438 * 6 4 2 33 33 H 0.96996 * 119.99688 * 325.00215 * 9 7 4 34 34 H 0.96994 * 119.99691 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.1864 -0.5464 2.5069 6 6 2.7402 -2.0672 1.0522 7 6 3.5550 -0.8297 1.4333 8 1 3.9436 -0.7766 2.4504 9 7 4.4064 -0.2347 0.4001 10 16 5.8447 0.4718 0.8179 11 8 6.4403 0.9159 -0.3933 12 8 5.5644 1.3375 1.9094 13 6 6.8874 -0.8013 1.4476 14 1 6.5280 -1.8186 1.4975 15 6 8.1624 -0.4988 1.8767 16 7 8.9409 -1.4491 2.3463 17 14 8.7844 1.2604 1.7898 18 1 8.4589 1.9636 3.0566 19 1 10.2559 1.2559 1.5902 20 1 8.1327 1.9603 0.6537 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.8935 -0.5138 -0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 1.4803 0.3686 3.0213 29 1 1.3357 -1.3994 3.1689 30 1 0.1349 -0.4838 2.2265 31 1 2.5926 -2.8283 1.8184 32 1 2.8372 -2.4395 0.0323 33 1 4.1274 -0.2545 -0.5287 34 1 9.8379 -1.2364 2.6478 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397206083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:29 Heat of formation + Delta-G solvation = -90.811300 kcal Electronic energy + Delta-G solvation = -17065.006694 eV Core-core repulsion = 14317.281147 eV Total energy + Delta-G solvation = -2747.725547 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.24495 -37.67493 -36.50536 -35.21116 -34.95879 -33.09092 -28.94488 -28.57230 -27.67343 -23.51287 -22.95971 -21.13820 -19.66765 -19.21098 -18.63155 -17.36401 -17.06205 -16.11347 -15.64657 -15.48616 -15.00900 -14.94262 -14.67044 -14.28097 -13.71068 -13.55103 -13.38493 -13.31271 -12.94335 -12.78467 -12.67087 -12.58392 -12.48373 -12.27517 -11.98225 -11.89814 -11.80436 -11.38199 -11.34820 -11.12205 -10.57298 -9.57853 -8.97596 -7.53109 0.12766 1.03507 1.12912 1.20169 1.87820 2.40144 2.52950 2.88262 3.30593 3.73999 3.82261 3.98955 4.10171 4.24110 4.34298 4.44006 4.51517 4.65378 4.88044 4.95037 4.98345 5.02786 5.06688 5.11897 5.24308 5.28154 5.32916 5.41678 5.44803 5.52858 5.66503 6.01549 6.25590 6.52799 8.20184 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.039292 B = 0.007675 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.445323 B = 3647.216874 C = 3935.712600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.159 4.159 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.170 4.170 7 C 0.070 3.930 8 H 0.118 0.882 9 N -1.075 6.075 10 S 2.701 3.299 11 O -1.030 7.030 12 O -1.026 7.026 13 C -1.037 5.037 14 H 0.107 0.893 15 C 0.108 3.892 16 N -0.853 5.853 17 Si 0.823 3.177 18 H -0.238 1.238 19 H -0.219 1.219 20 H -0.230 1.230 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.418 0.582 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.729 0.721 -2.652 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.217 4.217 4 C -0.121 4.121 5 C -0.179 4.179 6 C -0.209 4.209 7 C -0.038 4.038 8 H 0.136 0.864 9 N -0.832 5.832 10 S 2.801 3.199 11 O -1.021 7.021 12 O -1.016 7.016 13 C -1.170 5.170 14 H 0.125 0.875 15 C -0.109 4.109 16 N -0.484 5.484 17 Si 0.640 3.360 18 H -0.162 1.162 19 H -0.141 1.141 20 H -0.152 1.152 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.253 0.747 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.266 1.579 -2.484 15.547 hybrid contribution 0.994 -0.320 -0.069 1.046 sum -14.272 1.259 -2.553 14.553 Atomic orbital electron populations 1.21859 0.93084 1.02412 1.02309 1.20629 0.97095 0.94890 0.95091 1.22009 1.00860 0.96726 1.02086 1.22170 0.92254 0.99128 0.98567 1.21531 1.00129 1.01966 0.94276 1.23779 1.02011 0.91208 1.03897 1.21547 0.89556 1.01280 0.91433 0.86426 1.54608 1.36456 1.76217 1.15918 1.00423 0.72552 0.74179 0.72772 1.93437 1.76848 1.82864 1.48900 1.93384 1.85019 1.67048 1.56142 1.31006 1.13096 1.14510 1.58343 0.87492 1.25170 0.95466 1.00702 0.89541 1.70011 1.09466 1.34665 1.34212 0.87513 0.84223 0.81209 0.83013 1.16164 1.14100 1.15238 0.91669 0.92049 0.91699 0.91079 0.94308 0.91476 0.92662 0.92918 0.91634 0.89302 0.86791 0.87797 0.74666 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.20 71.98 0.59 -1.73 16 2 C -0.06 -1.31 2.38 -10.79 -0.03 -1.34 16 3 C -0.16 -4.14 8.92 71.98 0.64 -3.50 16 4 C -0.12 -2.95 1.91 -52.18 -0.10 -3.05 16 5 C -0.12 -2.56 9.49 71.98 0.68 -1.87 16 6 C -0.17 -4.29 9.75 30.59 0.30 -4.00 16 7 C 0.07 2.33 5.98 44.99 0.27 2.60 16 8 H 0.12 4.31 8.11 -2.39 -0.02 4.29 16 9 N -1.08 -40.80 3.85 -169.38 -0.65 -41.45 16 10 S 2.70 135.15 4.22 -56.49 -0.24 134.91 16 11 O -1.03 -55.37 16.02 -128.00 -2.05 -57.42 16 12 O -1.03 -54.72 16.60 -128.00 -2.12 -56.85 16 13 C -1.04 -58.94 10.26 67.74 0.69 -58.24 16 14 H 0.11 6.22 8.06 -2.91 -0.02 6.19 16 15 C 0.11 6.27 5.47 84.66 0.46 6.74 16 16 N -0.85 -49.85 13.96 21.45 0.30 -49.55 16 17 Si 0.82 41.55 26.54 68.60 1.82 43.37 16 18 H -0.24 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.22 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.23 -11.93 5.60 99.48 0.56 -11.38 16 21 H 0.06 1.02 6.44 -2.39 -0.02 1.00 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 1.55 7.63 -2.39 -0.02 1.53 16 25 H 0.04 1.21 5.56 -2.39 -0.01 1.20 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.26 7.90 -2.39 -0.02 1.24 16 30 H 0.09 1.46 5.58 -2.38 -0.01 1.44 16 31 H 0.11 2.52 8.05 -2.39 -0.02 2.50 16 32 H 0.10 2.45 8.05 -2.39 -0.02 2.43 16 33 H 0.42 13.65 7.65 -96.74 -0.74 12.91 16 34 H 0.29 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -68.34 285.40 0.78 -67.56 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.20 Total: 23.82 kcal Atomic # 6 Polarization: -67.90 SS G_CDS: 3.52 Total: -64.38 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -0.35 Total: -91.01 kcal Atomic # 8 Polarization: -110.10 SS G_CDS: -4.17 Total: -114.27 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.82 Total: 43.37 kcal Atomic # 16 Polarization: 135.15 SS G_CDS: -0.24 Total: 134.91 kcal Total: -68.34 0.78 -67.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397206083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.251 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds