Wall clock time and date at job start Mon Mar 30 2020 03:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47198 * 240.00051 * 3 2 1 5 5 H 1.48506 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47218 * 120.00001 * 3 2 1 7 7 C 1.39943 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00258 * 197.84863 * 7 2 1 9 9 C 1.41401 * 119.99685 * 17.84693 * 7 2 1 10 10 C 1.40721 * 120.24052 * 204.38373 * 9 7 2 11 11 C 1.37624 * 119.74120 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24793 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.74796 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47081 * 90.00171 * 13 12 11 15 15 C 1.47099 * 125.56208 * 90.00042 * 14 13 12 16 16 C 1.54082 * 103.77567 * 180.02562 * 15 14 13 17 17 O 1.45699 * 104.13739 * 359.93059 * 16 15 14 18 18 C 1.34010 * 125.55997 * 270.02158 * 14 13 12 19 19 O 1.21506 * 123.06926 * 0.02810 * 18 14 13 20 20 C 1.38631 * 120.50294 * 0.25492 * 12 11 10 21 21 C 1.37622 * 120.24986 * 359.43949 * 20 12 11 22 22 H 0.96997 * 119.99983 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.13028 * 0.02562 * 10 9 7 24 24 H 1.07994 * 119.87063 * 180.02562 * 11 10 9 25 25 H 1.09005 * 109.47150 * 330.00401 * 13 12 11 26 26 H 1.09002 * 109.47341 * 210.00413 * 13 12 11 27 27 H 1.09001 * 110.55943 * 61.44457 * 15 14 13 28 28 H 1.09003 * 110.55926 * 298.59633 * 15 14 13 29 29 H 1.09006 * 110.51732 * 118.63471 * 16 15 14 30 30 H 1.09007 * 110.52156 * 241.22732 * 16 15 14 31 31 H 1.08008 * 119.87586 * 179.70463 * 20 12 11 32 32 H 1.07999 * 120.13139 * 180.27383 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0081 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3521 -2.4072 -0.3742 10 6 1.8260 -3.6498 0.0856 11 6 1.1799 -4.8068 -0.2859 12 6 0.0668 -4.7512 -1.1104 13 6 -0.6316 -6.0251 -1.5107 14 7 -1.6747 -6.3388 -0.5310 15 6 -3.0735 -5.8886 -0.5969 16 6 -3.7146 -6.4971 0.6651 17 8 -2.6239 -7.2211 1.3046 18 6 -1.5100 -7.0824 0.5716 19 8 -0.4478 -7.5858 0.8793 20 6 -0.4053 -3.5330 -1.5740 21 6 0.2211 -2.3628 -1.2103 22 1 -0.4850 0.8400 0.0004 23 1 2.6932 -3.6954 0.7276 24 1 1.5416 -5.7616 0.0661 25 1 0.0912 -6.8403 -1.5454 26 1 -1.0835 -5.8981 -2.4945 27 1 -3.5572 -6.2722 -1.4953 28 1 -3.1272 -4.8003 -0.5669 29 1 -4.0878 -5.7106 1.3212 30 1 -4.5193 -7.1804 0.3934 31 1 -1.2705 -3.5018 -2.2197 32 1 -0.1509 -1.4145 -1.5690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399117287.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:33 Heat of formation + Delta-G solvation = -54.223312 kcal Electronic energy + Delta-G solvation = -17429.205586 eV Core-core repulsion = 14547.622662 eV Total energy + Delta-G solvation = -2881.582924 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.14308 -37.73784 -36.74613 -35.26754 -33.65393 -30.89590 -29.47812 -29.12985 -27.02418 -24.17072 -23.39622 -21.10817 -20.98313 -19.79914 -17.35232 -17.09770 -16.92825 -16.42046 -15.38310 -14.58947 -14.52267 -13.93291 -13.84326 -13.71924 -13.51679 -13.00242 -12.46381 -12.26195 -11.97965 -11.67811 -11.56420 -11.10594 -11.04571 -10.77736 -10.48538 -10.45156 -10.21384 -9.82179 -9.43888 -9.19746 -8.47596 -7.52463 -7.38564 -6.84013 -4.42486 2.47057 2.91746 3.01921 3.04572 3.06013 3.14035 3.25641 3.78853 3.87680 4.31701 4.57446 4.74005 4.94065 5.28457 5.43115 5.60741 5.64000 5.94792 6.00803 6.08104 6.28760 6.45475 6.81708 6.90816 7.01099 7.23552 7.31324 7.56409 7.69191 7.80396 7.99563 8.06613 8.24862 8.41773 8.57426 8.82830 8.91225 10.10159 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.036399 B = 0.005481 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.071249 B = 5107.124718 C = 5341.706604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.116 3.884 10 C -0.229 4.229 11 C -0.063 4.063 12 C -0.250 4.250 13 C 0.208 3.792 14 N -0.617 5.617 15 C 0.064 3.936 16 C 0.042 3.958 17 O -0.338 6.338 18 C 0.639 3.361 19 O -0.526 6.526 20 C -0.085 4.085 21 C -0.171 4.171 22 H 0.281 0.719 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 -5.171 -3.522 10.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.249 4.249 11 C -0.082 4.082 12 C -0.252 4.252 13 C 0.089 3.911 14 N -0.364 5.364 15 C -0.060 4.060 16 C -0.033 4.033 17 O -0.249 6.249 18 C 0.393 3.607 19 O -0.411 6.411 20 C -0.104 4.104 21 C -0.190 4.190 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.884 -5.405 -3.157 10.066 hybrid contribution 0.118 1.054 0.033 1.061 sum -7.766 -4.351 -3.124 9.434 Atomic orbital electron populations 1.69819 1.07648 1.29402 1.34681 1.25938 0.94744 1.01418 0.92116 0.86343 0.80165 0.80017 0.80088 1.18733 1.20293 1.18933 1.19628 0.98220 0.91293 1.39687 0.90345 1.17671 0.90920 0.92016 0.88059 1.21005 1.04036 0.92838 1.07011 1.20501 0.94881 0.96828 0.95976 1.19252 1.01904 0.93215 1.10872 1.20010 0.86881 0.96141 0.88036 1.48546 1.10637 1.52033 1.25218 1.22740 0.82780 1.02016 0.98419 1.24202 0.88989 0.96524 0.93624 1.87314 1.20157 1.69248 1.48163 1.18597 0.83561 0.79006 0.79532 1.90996 1.23314 1.53617 1.73217 1.20485 0.98012 0.92652 0.99207 1.21272 0.99671 0.96656 1.01425 0.90765 0.88967 0.88938 0.90312 0.90703 0.89612 0.88938 0.88013 0.88212 0.89699 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.99 10.95 55.55 0.61 -19.39 16 2 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.13 9.05 -37.74 -0.34 -12.47 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.12 3.09 5.58 -106.82 -0.60 2.49 16 10 C -0.23 -5.80 9.80 -38.87 -0.38 -6.18 16 11 C -0.06 -1.48 9.67 -39.66 -0.38 -1.86 16 12 C -0.25 -5.33 5.48 -104.33 -0.57 -5.91 16 13 C 0.21 3.56 6.13 -5.20 -0.03 3.52 16 14 N -0.62 -10.17 2.95 -180.13 -0.53 -10.70 16 15 C 0.06 0.75 7.70 -3.15 -0.02 0.72 16 16 C 0.04 0.44 8.22 37.72 0.31 0.75 16 17 O -0.34 -5.53 11.11 -38.58 -0.43 -5.95 16 18 C 0.64 12.20 8.85 53.71 0.48 12.68 16 19 O -0.53 -12.02 17.54 -19.10 -0.34 -12.35 16 20 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 21 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 22 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 23 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 24 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 25 H 0.08 1.37 7.87 -51.93 -0.41 0.96 16 26 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 LS Contribution 282.50 15.07 4.26 4.26 Total: -1.00 -31.01 282.50 -7.47 -38.48 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -3.66 Total: 3.68 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.35 Total: -11.36 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.08 Total: -30.08 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.76 Total: -18.31 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.01 -7.47 -38.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399117287.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.742 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds