Wall clock time and date at job start Mon Mar 30 2020 03:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99782 * 2 1 4 4 H 1.48500 * 109.47011 * 240.00070 * 3 2 1 5 5 H 1.48497 * 109.47605 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46788 * 120.00660 * 3 2 1 7 7 C 1.37874 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99827 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99819 * 359.97438 * 7 2 1 10 10 S 1.81406 * 109.47004 * 180.02562 * 9 7 2 11 11 O 1.42097 * 110.54242 * 68.37803 * 10 9 7 12 12 O 1.42100 * 110.54304 * 291.62521 * 10 9 7 13 13 N 1.65596 * 104.44797 * 180.02562 * 10 9 7 14 14 C 1.46505 * 119.99941 * 65.00238 * 13 10 9 15 15 C 1.52997 * 109.47212 * 164.99768 * 14 13 10 16 16 C 1.54267 * 110.03373 * 292.90986 * 15 14 13 17 17 C 1.54968 * 104.16137 * 217.13581 * 16 15 14 18 18 C 1.54884 * 102.77441 * 37.88396 * 17 16 15 19 19 C 1.53874 * 110.03593 * 175.68906 * 15 14 13 20 20 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46703 * 60.00773 * 9 7 2 22 22 H 1.08991 * 109.47487 * 300.00284 * 9 7 2 23 23 H 0.96997 * 120.00145 * 244.99357 * 13 10 9 24 24 H 1.09002 * 109.47068 * 284.99828 * 14 13 10 25 25 H 1.09001 * 109.47372 * 44.99916 * 14 13 10 26 26 H 1.09004 * 110.01939 * 54.29375 * 15 14 13 27 27 H 1.09001 * 110.48609 * 335.77840 * 16 15 14 28 28 H 1.08999 * 110.49311 * 98.42344 * 16 15 14 29 29 H 1.08997 * 110.72048 * 279.57487 * 17 16 15 30 30 H 1.08993 * 110.92252 * 156.29196 * 17 16 15 31 31 H 1.09009 * 110.48779 * 203.40596 * 18 17 16 32 32 H 1.09001 * 110.59973 * 80.82109 * 18 17 16 33 33 H 1.09003 * 110.03243 * 238.56963 * 19 15 14 34 34 H 1.09004 * 110.03196 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 8 3.1265 -3.9383 1.2364 12 8 3.1266 -3.9383 -1.2375 13 7 1.4795 -5.2340 -0.0013 14 6 0.6204 -5.5259 -1.1516 15 6 0.1469 -6.9789 -1.0789 16 6 1.3418 -7.9346 -1.2757 17 6 0.7571 -9.1072 -2.1031 18 6 -0.2139 -8.3906 -3.0740 19 6 -0.8421 -7.2689 -2.2214 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5566 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 1.4917 -5.8352 0.7598 24 1 -0.2433 -4.8611 -1.1379 25 1 1.1823 -5.3725 -2.0729 26 1 -0.3284 -7.1688 -0.1164 27 1 2.1399 -7.4388 -1.8282 28 1 1.7077 -8.2913 -0.3129 29 1 0.2171 -9.8017 -1.4596 30 1 1.5425 -9.6244 -2.6541 31 1 -0.9824 -9.0803 -3.4231 32 1 0.3306 -7.9683 -3.9186 33 1 -1.7971 -7.6002 -1.8136 34 1 -0.9851 -6.3742 -2.8275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408457733.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:33 Heat of formation + Delta-G solvation = -129.585123 kcal Electronic energy + Delta-G solvation = -16378.141300 eV Core-core repulsion = 13628.734393 eV Total energy + Delta-G solvation = -2749.406906 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45348 -37.93684 -36.83107 -35.58565 -35.39928 -31.02163 -30.28905 -29.44525 -25.54893 -25.15344 -21.49370 -20.92490 -20.08979 -19.06032 -18.01825 -17.65040 -17.19181 -16.51889 -16.18960 -15.91377 -15.24209 -15.09271 -14.46150 -14.13339 -14.00536 -13.51910 -13.41617 -13.14163 -13.02993 -12.92996 -12.71879 -12.51456 -11.97203 -11.93481 -11.85502 -11.79934 -11.74916 -11.45610 -11.32143 -11.13695 -10.77469 -10.20361 -8.41073 -6.59141 -0.38667 1.38246 1.41270 1.49467 2.07925 2.32695 2.92943 3.02097 3.49839 3.70278 3.75272 3.83944 4.34073 4.45472 4.53171 4.57428 4.64451 4.75984 4.77716 4.82200 4.87889 4.96087 5.05046 5.14175 5.18398 5.30365 5.33964 5.41821 5.53352 5.56247 5.73097 6.24048 6.51331 7.12503 8.71286 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.039216 B = 0.005507 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.814833 B = 5083.178016 C = 5467.702903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.570 4.570 8 H 0.064 0.936 9 C -0.433 4.433 10 S 2.624 3.376 11 O -1.008 7.008 12 O -1.006 7.006 13 N -1.113 6.113 14 C 0.114 3.886 15 C -0.093 4.093 16 C -0.128 4.128 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.121 4.121 20 H 0.274 0.726 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.421 0.579 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 -15.161 -3.468 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.608 4.608 8 H 0.082 0.918 9 C -0.567 4.567 10 S 2.722 3.278 11 O -0.998 6.998 12 O -0.996 6.996 13 N -0.874 5.874 14 C -0.012 4.012 15 C -0.113 4.113 16 C -0.165 4.165 17 C -0.159 4.159 18 C -0.163 4.163 19 C -0.160 4.160 20 H 0.083 0.917 21 H 0.099 0.901 22 H 0.098 0.902 23 H 0.257 0.743 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.876 -14.959 -3.636 15.661 hybrid contribution -0.295 1.006 0.385 1.117 sum -3.171 -13.953 -3.251 14.674 Atomic orbital electron populations 1.70018 1.07479 1.28897 1.48037 1.25814 0.95955 1.03081 0.92843 0.85537 0.78743 0.77504 0.79775 1.18750 1.19338 1.18792 1.20748 0.93041 0.90915 1.56133 0.91833 1.27787 1.11245 1.11513 1.06157 1.04327 0.75760 0.75293 0.72411 1.93436 1.72843 1.86937 1.46597 1.93432 1.72329 1.86748 1.47085 1.55306 1.62167 1.41495 1.28406 1.21658 0.93581 0.98384 0.87539 1.21990 0.96560 0.91922 1.00843 1.22518 0.97119 0.96299 1.00599 1.22505 0.98711 0.96913 0.97744 1.22381 0.98811 0.97293 0.97806 1.22201 0.98385 0.99255 0.96111 0.91727 0.90131 0.90184 0.74328 0.91261 0.91516 0.89140 0.92840 0.91187 0.90497 0.91338 0.90349 0.92133 0.90137 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.61 13.29 21.45 0.28 -51.33 16 2 C 0.03 1.46 5.46 84.65 0.46 1.92 16 3 Si 0.96 42.78 29.54 68.60 2.03 44.80 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.57 -32.07 9.13 25.60 0.23 -31.84 16 8 H 0.06 3.53 7.71 -2.91 -0.02 3.50 16 9 C -0.43 -21.25 5.83 71.24 0.42 -20.84 16 10 S 2.62 111.81 5.38 -56.49 -0.30 111.51 16 11 O -1.01 -47.87 18.08 -127.65 -2.31 -50.17 16 12 O -1.01 -47.92 17.49 -127.65 -2.23 -50.16 16 13 N -1.11 -34.72 5.69 -187.48 -1.07 -35.79 16 14 C 0.11 3.14 5.18 86.38 0.45 3.58 16 15 C -0.09 -1.93 2.97 -10.07 -0.03 -1.96 16 16 C -0.13 -2.63 6.18 31.70 0.20 -2.44 16 17 C -0.12 -1.97 6.91 31.91 0.22 -1.75 16 18 C -0.13 -2.02 6.83 31.67 0.22 -1.80 16 19 C -0.12 -2.14 6.46 31.32 0.20 -1.94 16 20 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 21 H 0.08 3.91 8.14 -2.39 -0.02 3.89 16 22 H 0.08 3.93 8.14 -2.40 -0.02 3.91 16 23 H 0.42 11.00 8.62 -96.75 -0.83 10.17 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 1.99 7.57 -2.39 -0.02 1.97 16 26 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.05 1.31 7.77 -2.39 -0.02 1.29 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.23 7.67 -2.38 -0.02 1.21 16 Total: -1.00 -69.36 294.80 -0.99 -70.35 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.24 Total: 17.84 kcal Atomic # 6 Polarization: -59.43 SS G_CDS: 2.36 Total: -57.06 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -0.78 Total: -87.11 kcal Atomic # 8 Polarization: -95.79 SS G_CDS: -4.54 Total: -100.33 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 111.81 SS G_CDS: -0.30 Total: 111.51 kcal Total: -69.36 -0.99 -70.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408457733.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.230 kcal (2) G-P(sol) polarization free energy of solvation -69.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds