Wall clock time and date at job start Mon Mar 30 2020 03:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 112.84997 * 2 1 4 4 N 1.46506 * 109.47172 * 48.80287 * 3 2 1 5 5 S 1.65600 * 119.99871 * 165.00356 * 4 3 2 6 6 O 1.42101 * 104.27882 * 308.92501 * 5 4 3 7 7 O 1.42102 * 104.27187 * 181.06876 * 5 4 3 8 8 C 1.81399 * 104.45301 * 64.99838 * 5 4 3 9 9 C 1.50692 * 109.47062 * 179.97438 * 8 5 4 10 10 H 1.07999 * 120.00490 * 0.02562 * 9 8 5 11 11 C 1.37879 * 120.00155 * 179.97438 * 9 8 5 12 12 N 1.31513 * 119.99555 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00373 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46859 * 60.00115 * 13 11 9 15 15 H 1.48496 * 109.47056 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47159 * 300.00184 * 13 11 9 17 17 C 1.53784 * 113.69341 * 131.26382 * 2 1 3 18 18 C 1.53789 * 87.07799 * 89.12895 * 17 2 1 19 19 C 1.53782 * 87.08124 * 25.43451 * 18 17 2 20 20 H 1.09006 * 109.47256 * 69.66962 * 1 2 3 21 21 H 1.08999 * 109.47202 * 189.66725 * 1 2 3 22 22 H 1.09000 * 109.47735 * 309.66655 * 1 2 3 23 23 H 1.08997 * 109.47592 * 288.80087 * 3 2 1 24 24 H 1.08997 * 109.47726 * 168.80192 * 3 2 1 25 25 H 0.97002 * 119.99684 * 344.99815 * 4 3 2 26 26 H 1.09001 * 109.46838 * 300.00058 * 8 5 4 27 27 H 1.08998 * 109.46934 * 59.99858 * 8 5 4 28 28 H 0.97001 * 119.99930 * 180.02562 * 12 11 9 29 29 H 1.08997 * 113.61893 * 203.67393 * 17 2 1 30 30 H 1.08997 * 113.61040 * 334.58375 * 17 2 1 31 31 H 1.09003 * 113.61444 * 270.88475 * 18 17 2 32 32 H 1.09002 * 113.68928 * 139.99270 * 18 17 2 33 33 H 1.08990 * 113.61368 * 220.01774 * 19 18 17 34 34 H 1.09000 * 113.61194 * 89.11365 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1240 1.4099 0.0000 4 7 1.4753 2.2132 1.0393 5 16 2.1534 3.6443 1.5237 6 8 3.5039 3.3114 1.8146 7 8 1.2808 4.1194 2.5395 8 6 2.0618 4.7080 0.0571 9 6 2.6552 6.0558 0.3764 10 1 3.0486 6.2529 1.3627 11 6 2.6970 7.0374 -0.5911 12 7 2.2185 6.7973 -1.7923 13 14 3.4319 8.7085 -0.1952 14 1 4.8513 8.5419 0.2084 15 1 3.3581 9.5787 -1.3961 16 1 2.6712 9.3329 0.9167 17 6 2.1479 -0.9288 1.0585 18 6 2.0950 -2.0420 -0.0012 19 6 2.1460 -0.9281 -1.0602 20 1 -0.3634 0.3571 -0.9637 21 1 -0.3633 -1.0131 0.1726 22 1 -0.3634 0.6559 0.7910 23 1 1.9600 1.8734 -0.9728 24 1 3.1941 1.3534 0.1996 25 1 0.6485 1.9069 1.4437 26 1 2.6192 4.2494 -0.7597 27 1 1.0198 4.8308 -0.2381 28 1 2.2482 7.4877 -2.4731 29 1 3.1609 -0.6487 1.3473 30 1 1.4973 -1.1093 1.9142 31 1 1.1594 -2.6014 -0.0006 32 1 2.9738 -2.6868 -0.0032 33 1 1.4940 -1.1080 -1.9149 34 1 3.1585 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408460586.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:55 Heat of formation + Delta-G solvation = -95.162811 kcal Electronic energy + Delta-G solvation = -16548.098432 eV Core-core repulsion = 13800.184190 eV Total energy + Delta-G solvation = -2747.914243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53870 -37.94614 -36.83274 -35.57928 -35.40030 -31.02326 -30.14634 -27.53880 -26.46510 -25.54109 -23.04525 -20.41257 -19.31510 -18.97127 -18.12695 -17.54566 -17.15787 -16.39349 -16.06528 -15.75518 -15.24834 -15.06053 -14.49602 -14.16410 -13.99289 -13.44451 -13.34869 -13.05905 -12.99699 -12.96888 -12.77098 -12.72061 -12.62482 -12.49156 -12.03299 -11.81730 -11.34624 -11.25549 -11.06506 -10.97560 -10.77522 -10.15560 -8.41073 -6.59131 -0.38679 1.38156 1.41227 1.49418 2.07684 2.32646 2.92894 3.01973 3.47087 3.65574 3.69922 3.83454 4.02548 4.19934 4.40876 4.63401 4.70459 4.76583 4.78771 4.85562 4.93152 4.98480 5.03692 5.05656 5.13457 5.27662 5.28520 5.33910 5.51954 5.67159 5.73068 6.23346 6.51290 7.12447 8.71315 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.038087 B = 0.005814 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.979609 B = 4814.963290 C = 5097.940194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 C 0.122 3.878 4 N -1.112 6.112 5 S 2.623 3.377 6 O -1.006 7.006 7 O -1.008 7.008 8 C -0.432 4.432 9 C -0.569 4.569 10 H 0.063 0.937 11 C 0.026 3.974 12 N -0.908 5.908 13 Si 0.962 3.038 14 H -0.263 1.263 15 H -0.269 1.269 16 H -0.263 1.263 17 C -0.139 4.139 18 C -0.130 4.130 19 C -0.128 4.128 20 H 0.064 0.936 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.419 0.581 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.274 0.726 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 -15.415 -0.244 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 C -0.004 4.004 4 N -0.874 5.874 5 S 2.721 3.279 6 O -0.996 6.996 7 O -0.999 6.999 8 C -0.566 4.566 9 C -0.608 4.608 10 H 0.081 0.919 11 C -0.177 4.177 12 N -0.544 5.544 13 Si 0.785 3.215 14 H -0.188 1.188 15 H -0.193 1.193 16 H -0.188 1.188 17 C -0.177 4.177 18 C -0.167 4.167 19 C -0.166 4.166 20 H 0.083 0.917 21 H 0.095 0.905 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.257 0.743 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.346 -15.142 0.383 15.327 hybrid contribution -0.158 1.019 -0.428 1.117 sum -2.504 -14.123 -0.045 14.343 Atomic orbital electron populations 1.21608 0.91908 1.02782 1.02412 1.22102 0.96828 0.91538 0.99082 1.21475 0.96765 0.92049 0.90073 1.55388 1.39537 1.38398 1.54098 1.04362 0.72815 0.73950 0.76779 1.93430 1.38465 1.83082 1.84622 1.93435 1.67375 1.81587 1.57459 1.27775 1.05826 1.08439 1.14558 1.20742 1.43473 0.97218 0.99378 0.91854 1.25817 0.94513 1.02979 0.94388 1.70017 1.44528 1.35995 1.03887 0.85534 0.79543 0.77862 0.78603 1.18760 1.19330 1.18786 1.23078 1.00857 0.96631 0.97125 1.22779 1.02874 0.95826 0.95224 1.22998 1.01414 0.95456 0.96768 0.91659 0.90506 0.92510 0.91396 0.91307 0.74338 0.90145 0.90197 0.91726 0.90958 0.91179 0.88961 0.90827 0.90109 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.91 71.98 0.64 -1.73 16 2 C -0.09 -1.98 1.14 -51.66 -0.06 -2.04 16 3 C 0.12 3.43 5.61 86.38 0.48 3.91 16 4 N -1.11 -35.41 5.76 -187.49 -1.08 -36.49 16 5 S 2.62 112.58 5.38 -56.49 -0.30 112.27 16 6 O -1.01 -48.12 17.50 -127.65 -2.23 -50.35 16 7 O -1.01 -48.19 18.08 -127.65 -2.31 -50.50 16 8 C -0.43 -21.28 5.83 71.23 0.42 -20.86 16 9 C -0.57 -32.11 9.13 25.60 0.23 -31.88 16 10 H 0.06 3.52 7.71 -2.91 -0.02 3.50 16 11 C 0.03 1.46 5.46 84.66 0.46 1.92 16 12 N -0.91 -51.68 13.29 21.45 0.28 -51.39 16 13 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 14 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 17 C -0.14 -2.80 7.21 31.12 0.22 -2.58 16 18 C -0.13 -2.01 7.73 31.12 0.24 -1.77 16 19 C -0.13 -2.25 7.23 31.12 0.23 -2.02 16 20 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 21 H 0.08 1.12 7.34 -2.39 -0.02 1.10 16 22 H 0.06 1.08 6.07 -2.39 -0.01 1.06 16 23 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.07 2.06 7.50 -2.39 -0.02 2.04 16 25 H 0.42 11.46 6.52 -96.74 -0.63 10.83 16 26 H 0.08 3.92 8.14 -2.39 -0.02 3.90 16 27 H 0.08 3.94 8.14 -2.39 -0.02 3.92 16 28 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.07 1.63 7.96 -2.39 -0.02 1.61 16 30 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 31 H 0.09 1.19 7.64 -2.39 -0.02 1.17 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 34 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 Total: -1.00 -69.41 293.16 -0.29 -69.70 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.45 Total: 18.95 kcal Atomic # 6 Polarization: -59.91 SS G_CDS: 2.87 Total: -57.04 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -0.80 Total: -87.89 kcal Atomic # 8 Polarization: -96.31 SS G_CDS: -4.54 Total: -100.85 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 112.58 SS G_CDS: -0.30 Total: 112.27 kcal Total: -69.41 -0.29 -69.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460586.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.462 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds