Wall clock time and date at job start Mon Mar 30 2020 03:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48503 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47167 * 300.00610 * 3 2 1 6 6 H 1.48503 * 109.46972 * 60.00193 * 3 2 1 7 7 C 1.39885 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00297 * 197.93178 * 7 2 1 9 9 C 1.41217 * 120.00135 * 17.92264 * 7 2 1 10 10 C 1.40845 * 120.17487 * 24.56315 * 9 7 2 11 11 C 1.36421 * 119.80985 * 179.97438 * 10 9 7 12 12 C 1.39329 * 120.18559 * 0.02562 * 11 10 9 13 13 O 1.35673 * 119.81728 * 179.97438 * 12 11 10 14 14 C 1.39299 * 120.36378 * 359.68718 * 12 11 10 15 15 C 1.50699 * 119.90658 * 180.32109 * 14 12 11 16 16 H 1.08995 * 110.21477 * 323.34383 * 15 14 12 17 17 C 1.54478 * 110.24450 * 85.27330 * 15 14 12 18 18 C 1.54627 * 101.76500 * 144.41350 * 17 15 14 19 19 C 1.51286 * 104.19684 * 335.20205 * 18 17 15 20 20 O 1.21278 * 124.94591 * 196.25097 * 19 18 17 21 21 N 1.34420 * 110.11455 * 16.24964 * 19 18 17 22 22 C 1.36450 * 120.18020 * 0.59486 * 14 12 11 23 23 H 0.97009 * 120.00295 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.09918 * 359.97438 * 10 9 7 25 25 H 1.08004 * 119.90729 * 180.02562 * 11 10 9 26 26 H 0.96710 * 113.99654 * 90.00396 * 13 12 11 27 27 H 1.08998 * 110.96866 * 262.52926 * 17 15 14 28 28 H 1.09002 * 110.97122 * 26.25776 * 17 15 14 29 29 H 1.08998 * 110.49025 * 93.88083 * 18 17 15 30 30 H 1.09001 * 110.49161 * 216.39130 * 18 17 15 31 31 H 0.97000 * 124.35036 * 180.42457 * 21 19 18 32 32 H 1.08001 * 120.08896 * 179.70114 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8840 2.3964 1.2126 7 6 2.0082 -1.2114 -0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3536 -2.4046 -0.3774 10 6 0.2245 -2.3575 -1.2181 11 6 -0.4019 -3.5147 -1.5779 12 6 0.0721 -4.7408 -1.1158 13 8 -0.5569 -5.8871 -1.4779 14 6 1.1917 -4.7965 -0.2889 15 6 1.6998 -6.1287 0.1990 16 1 0.8646 -6.7986 0.4029 17 6 2.6453 -6.7566 -0.8489 18 6 3.6895 -7.4593 0.0494 19 6 3.6370 -6.6899 1.3509 20 8 4.4830 -6.7343 2.2188 21 7 2.5162 -5.9499 1.4056 22 6 1.8262 -3.6478 0.0849 23 1 -0.4851 0.8401 0.0004 24 1 -0.1444 -1.4079 -1.5768 25 1 -1.2676 -3.4805 -2.2228 26 1 -0.2147 -6.2835 -2.2910 27 1 2.1152 -7.4792 -1.4693 28 1 3.1131 -5.9871 -1.4631 29 1 3.4141 -8.5015 0.2110 30 1 4.6822 -7.3927 -0.3956 31 1 2.2776 -5.3717 2.1470 32 1 2.6913 -3.6924 0.7300 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687771934.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:33 Heat of formation + Delta-G solvation = -68.229119 kcal Electronic energy + Delta-G solvation = -17558.601551 eV Core-core repulsion = 14676.411290 eV Total energy + Delta-G solvation = -2882.190262 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18130 -38.32652 -36.06337 -35.82957 -33.35946 -31.09187 -30.30884 -29.37448 -26.23097 -24.87571 -22.13098 -21.12656 -20.31042 -19.99628 -17.56033 -17.28231 -16.64317 -16.03362 -15.33283 -14.73064 -14.41228 -14.16171 -13.75334 -13.28155 -13.16611 -12.74157 -12.60380 -12.34391 -11.87254 -11.74068 -11.46048 -11.23871 -11.04029 -10.81331 -10.76300 -10.21654 -9.91754 -9.63375 -9.39768 -9.10157 -8.74840 -7.68923 -7.36943 -6.92983 -4.48868 2.49690 2.76153 2.86717 2.99722 3.02159 3.06046 3.74497 3.82112 4.35862 4.63166 4.77464 5.04528 5.24899 5.33344 5.56908 5.62860 5.79250 5.82255 5.98717 6.14843 6.28876 6.76657 6.88270 6.92703 7.07006 7.15419 7.34818 7.41305 7.44190 7.80763 7.85818 8.03573 8.37381 8.54958 8.57691 8.70895 8.87742 10.01383 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023437 B = 0.007035 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.383736 B = 3979.084526 C = 4928.062492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.108 3.892 10 C -0.154 4.154 11 C -0.114 4.114 12 C -0.035 4.035 13 O -0.501 6.501 14 C -0.090 4.090 15 C 0.180 3.820 16 H 0.086 0.914 17 C -0.122 4.122 18 C -0.156 4.156 19 C 0.517 3.483 20 O -0.551 6.551 21 N -0.714 5.714 22 C -0.206 4.206 23 H 0.283 0.717 24 H 0.121 0.879 25 H 0.095 0.905 26 H 0.352 0.648 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.412 0.588 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 -7.236 -3.979 8.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.105 3.895 10 C -0.173 4.173 11 C -0.133 4.133 12 C -0.080 4.080 13 O -0.307 6.307 14 C -0.091 4.091 15 C 0.075 3.925 16 H 0.104 0.896 17 C -0.160 4.160 18 C -0.196 4.196 19 C 0.303 3.697 20 O -0.430 6.430 21 N -0.368 5.368 22 C -0.225 4.225 23 H 0.094 0.906 24 H 0.139 0.861 25 H 0.113 0.887 26 H 0.204 0.796 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.251 0.749 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.491 -7.061 -3.076 7.844 hybrid contribution 0.286 1.096 -0.142 1.142 sum 1.776 -5.965 -3.218 7.006 Atomic orbital electron populations 1.69843 1.07652 1.29504 1.34179 1.25954 0.94755 1.01572 0.92068 0.86244 0.81067 0.80683 0.78723 1.18260 1.19546 1.19833 1.19627 0.98311 0.91250 1.39189 0.90177 1.17644 0.91184 0.92040 0.88602 1.21035 0.98922 0.96853 1.00526 1.20716 0.99299 0.92662 1.00614 1.17692 0.97687 0.84654 1.07928 1.84831 1.61403 1.39130 1.45351 1.19337 0.95642 0.93341 1.00821 1.20388 0.92655 0.95763 0.83698 0.89576 1.22648 0.96045 1.00063 0.97222 1.22341 1.02001 1.00540 0.94691 1.20850 0.80859 0.79600 0.88370 1.90713 1.41508 1.66644 1.44129 1.46379 1.22411 1.46273 1.21741 1.20451 1.03499 0.91886 1.06700 0.90633 0.86093 0.88652 0.79633 0.89492 0.89665 0.88214 0.88390 0.74902 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.49 10.96 55.54 0.61 -18.88 16 2 C 0.08 1.81 5.13 -17.34 -0.09 1.72 16 3 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.45 -11.50 9.04 -37.83 -0.34 -11.84 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 9 C 0.11 2.70 5.57 -106.81 -0.60 2.11 16 10 C -0.15 -3.77 8.64 -39.25 -0.34 -4.10 16 11 C -0.11 -2.53 9.92 -39.83 -0.40 -2.92 16 12 C -0.03 -0.71 6.70 -38.78 -0.26 -0.97 16 13 O -0.50 -8.78 12.66 -18.72 -0.24 -9.02 16 14 C -0.09 -1.79 4.98 -104.87 -0.52 -2.32 16 15 C 0.18 2.86 3.42 -68.16 -0.23 2.63 16 16 H 0.09 1.34 7.77 -51.93 -0.40 0.94 16 17 C -0.12 -1.55 6.67 -25.10 -0.17 -1.71 16 18 C -0.16 -1.92 6.86 -26.74 -0.18 -2.10 16 19 C 0.52 8.62 8.43 -10.86 -0.09 8.53 16 20 O -0.55 -11.17 18.03 5.56 0.10 -11.07 16 21 N -0.71 -11.76 4.71 -53.88 -0.25 -12.01 16 22 C -0.21 -4.63 8.94 -39.25 -0.35 -4.99 16 23 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 24 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 25 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 26 H 0.35 4.53 9.06 45.56 0.41 4.94 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.17 7.90 -51.93 -0.41 0.76 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.41 6.90 8.62 -40.82 -0.35 6.55 16 32 H 0.10 2.18 7.04 -52.49 -0.37 1.81 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -28.91 276.85 -6.90 -35.81 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -2.69 Total: 14.05 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -3.57 Total: -15.98 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.35 Total: -30.89 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.14 Total: -20.09 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.91 -6.90 -35.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687771934.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.420 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds